BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4628.p
         (221 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300314024|ref|YP_003778116.1| flagellar basal body L-ring pro...   378   e-106
gi|300311355|ref|YP_003775447.1| flagellar basal-body L-ring pro...    84   1e-17

>gi|300314024|ref|YP_003778116.1| flagellar basal body L-ring
           protein [Herbaspirillum seropedicae SmR1]
          Length = 221

 Score =  378 bits (970), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 202/221 (91%), Positives = 209/221 (94%)

Query: 1   MSFQYRLASVAALAVLLSACSSPAPMVTGPTSVRPAYQVANVENNGAIFRVSSAQLFEEP 60
           M  Q RLA    LA LLSAC+SPAPMV GPTSVRPAYQVANVENNGAIFRVSSAQLFEEP
Sbjct: 1   MLIQTRLAGACTLAALLSACNSPAPMVIGPTSVRPAYQVANVENNGAIFRVSSAQLFEEP 60

Query: 61  TTYNVGDIIKIDISESISSSNKAATNNSRDSSLTQKGPGSDAPLGGLFTQLYNANYTATG 120
           T YNVGDIIKIDISESISSSNKAATNNSRDSSLTQKGPGS APLGGLFTQLY+ANY+A+G
Sbjct: 61  TAYNVGDIIKIDISESISSSNKAATNNSRDSSLTQKGPGSGAPLGGLFTQLYDANYSASG 120

Query: 121 NNTFKGSGDSSNSNTMTGTLMVSIVEVLPNRNLVVAGEKRIGVNGNINTLRFSGVVRTRD 180
           NNTFKGSGDSSN+NTM+GTLMVSIVEVLPNRNLVVAGEKRIGVNGNINTLRFSGVVRTRD
Sbjct: 121 NNTFKGSGDSSNTNTMSGTLMVSIVEVLPNRNLVVAGEKRIGVNGNINTLRFSGVVRTRD 180

Query: 181 IRGGIVASSNVADARLEQVGGGSIADASSDNNFFRRLLTIW 221
           IRGGIVASSNVADARLEQVGGGSIADAS+D NFFRRLLTIW
Sbjct: 181 IRGGIVASSNVADARLEQVGGGSIADASTDGNFFRRLLTIW 221


>gi|300311355|ref|YP_003775447.1| flagellar basal-body L-ring
           protein [Herbaspirillum seropedicae SmR1]
          Length = 219

 Score = 84.0 bits (206), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 65/200 (32%), Positives = 109/200 (54%), Gaps = 10/200 (5%)

Query: 1   MSFQYRLASVAALAVLLSACSSPAPMVTGPTSVRPAYQVANVENNGAIFRVSSAQ-LFEE 59
           M    +  ++A +  +    + P  +V GP S RP         +GAIF+ +  + L E+
Sbjct: 1   MKSMLKWVTLAGILAVAGCTTVPDSIVAGPKSARPQPASYAPPTSGAIFQGAVYRPLLED 60

Query: 60  PTTYNVGDIIKIDISESISSSNKAATNNSRDSSLTQKGPGSDAPLGGLF-TQLYNANYTA 118
                VGD + I I+E  S+   AA++ S+  ++       ++P+   F T +       
Sbjct: 61  RRARLVGDTLTIVINEKTSAGKSAASSASKTGAV-------NSPVPTFFGTSIKELTANG 113

Query: 119 TGNNTFKGSGDSSNSNTMTGTLMVSIVEVLPNRNLVVAGEKRIGVNGNINTLRFSGVVRT 178
           + +  F   G +++SNT TGT+ V++VEVLPN NLVVAGEK++ ++  +  +RFSG V  
Sbjct: 114 SSSAKFDDKGATTSSNTFTGTIGVTVVEVLPNGNLVVAGEKQVALDKGVEYVRFSGTVSP 173

Query: 179 RDIR-GGIVASSNVADARLE 197
            +I+ G  V+S+ VADA++E
Sbjct: 174 DNIQTGNTVSSTLVADAKVE 193


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.313    0.128    0.352 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 487,998
Number of extensions: 15389
Number of successful extensions: 55
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 54
Number of HSP's successfully gapped: 2
Length of query: 221
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 139
Effective length of database: 1,231,600
Effective search space: 171192400
Effective search space used: 171192400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 129 (54.3 bits)