BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4619.p
         (109 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300314015|ref|YP_003778107.1| hyperosmotically inducible peri...   160   2e-41
gi|300310531|ref|YP_003774623.1| periplasmic or secreted lipopro...    68   2e-13

>gi|300314015|ref|YP_003778107.1| hyperosmotically inducible
           periplasmic protein [Herbaspirillum seropedicae SmR1]
          Length = 112

 Score =  160 bits (406), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 92/112 (82%), Positives = 100/112 (89%), Gaps = 3/112 (2%)

Query: 1   MKKTPFVAKLLAASFLIAATVPTVQAAD--AP-SAQKAGAYIDDSVITAKVKAALLEDKQ 57
           MKKT F A+LLAAS L+ A  P VQAAD  AP +AQKAGAYIDDSVITAKVKAAL+EDKQ
Sbjct: 1   MKKTTFTARLLAASLLVTAAAPAVQAADRAAPVTAQKAGAYIDDSVITAKVKAALVEDKQ 60

Query: 58  VSAMKIKVTTKDGVVTLKGSVPTTELGQHALQLVAGVEGVRDVKSELTVRAG 109
           VSAMKI VTTKDGVVTLKGSVP+ ELGQHALQLVAG+EGVRDVKS+LTV+AG
Sbjct: 61  VSAMKINVTTKDGVVTLKGSVPSAELGQHALQLVAGIEGVRDVKSDLTVKAG 112


>gi|300310531|ref|YP_003774623.1| periplasmic or secreted
           lipoprotein [Herbaspirillum seropedicae SmR1]
          Length = 109

 Score = 67.8 bits (164), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 37/101 (36%), Positives = 56/101 (55%)

Query: 7   VAKLLAASFLIAATVPTVQAADAPSAQKAGAYIDDSVITAKVKAALLEDKQVSAMKIKVT 66
           + K     FL    V  V  A  P+ +  G Y+DD+VIT KVKAA+  +K + + +I V 
Sbjct: 8   LTKRFIGFFLALFMVSLVGCASGPNKEGTGEYVDDAVITTKVKAAIFNEKDLKSTEINVE 67

Query: 67  TKDGVVTLKGSVPTTELGQHALQLVAGVEGVRDVKSELTVR 107
           T  GVV L G V ++     A +L  GV+GV  V+++L ++
Sbjct: 68  TYKGVVQLSGFVSSSTAAARATELARGVKGVVSVRNDLRLK 108


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.313    0.126    0.326 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 281,409
Number of extensions: 8918
Number of successful extensions: 49
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 48
Number of HSP's successfully gapped: 2
Length of query: 109
Length of database: 1,619,870
Length adjustment: 72
Effective length of query: 37
Effective length of database: 1,278,950
Effective search space: 47321150
Effective search space used: 47321150
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 124 (52.4 bits)