BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4614.p
         (566 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300314003|ref|YP_003778095.1| urease subunit alpha [Herbaspir...  1153   0.0  

>gi|300314003|ref|YP_003778095.1| urease subunit alpha
           [Herbaspirillum seropedicae SmR1]
          Length = 566

 Score = 1153 bits (2982), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 558/566 (98%), Positives = 565/566 (99%)

Query: 1   MSKISRSAYAEMFGPTVGDRVRLADTELFLEVEKDYTIYGEEVKFGGGKVIRDGMGQSQR 60
           MSKISRSAYAEMFGPTVGDRVRLADTELFLEVEKDYT+YGEEVKFGGGKVIRDGMGQSQR
Sbjct: 1   MSKISRSAYAEMFGPTVGDRVRLADTELFLEVEKDYTVYGEEVKFGGGKVIRDGMGQSQR 60

Query: 61  AHADVMDTVITNALIVDHWGIVKADIGIKSGKIAGIGKAGNPDIQPGVTMAIGGATEIIA 120
           AHADVMDTVITNALIVDHWGIVKADIGIKSGKIAGIGKAGNPDIQPGVTMAIGGATEIIA
Sbjct: 61  AHADVMDTVITNALIVDHWGIVKADIGIKSGKIAGIGKAGNPDIQPGVTMAIGGATEIIA 120

Query: 121 GEGMIVTAGGIDSHIHFICPQQIEEALMSGVTTMLGGGTGPAVGTAATTCTPGPWHIHSM 180
           GEGMIVTAGGIDSHIHFICPQQIEEALMSGVTTMLGGGTGPAVGTAATTCTPGPWHIHSM
Sbjct: 121 GEGMIVTAGGIDSHIHFICPQQIEEALMSGVTTMLGGGTGPAVGTAATTCTPGPWHIHSM 180

Query: 181 LAAADAFPMNLGFLGKGNVSLPLPLEEQIRAGAIGLKLHEDWGSTPAAIDNCLTVADRMD 240
           LAAADAFPMNLGFLGKGNVSLPLPLEEQIRAGAIGLKLHEDWGSTPAAIDNCLTVADRMD
Sbjct: 181 LAAADAFPMNLGFLGKGNVSLPLPLEEQIRAGAIGLKLHEDWGSTPAAIDNCLTVADRMD 240

Query: 241 IQVAIHTDTLNEGGFLEHTLAAFKDRTIHTFHTEGAGGGHAPDIIAAVGEGNVLPSSTNP 300
           IQVAIHTDTLNEGGFLEHTL+AFKDRTIHTFHTEGAGGGHAPDIIAAVGEGNVLPSSTNP
Sbjct: 241 IQVAIHTDTLNEGGFLEHTLSAFKDRTIHTFHTEGAGGGHAPDIIAAVGEGNVLPSSTNP 300

Query: 301 TRPFTVNTLDEHLDMLMVCHHLDPAIAEDIAFAESRIRRETIAAEDILHDIGAISMMSSD 360
           TRPFTVNTLDEHLDMLMVCHHLDPAIAEDIAFAESRIRRETIAAEDILHDIGAISMMSSD
Sbjct: 301 TRPFTVNTLDEHLDMLMVCHHLDPAIAEDIAFAESRIRRETIAAEDILHDIGAISMMSSD 360

Query: 361 SQAMGRVGEVIMRTWQTAHKMKVQRGSLKEDSSRNDNFRIKRYIAKYTINPAITHGISHV 420
           SQAMGRVGEVIMRTWQTAHKMKVQRGSLKED+SRNDNFRIKRYIAKYTINPAITHGI+HV
Sbjct: 361 SQAMGRVGEVIMRTWQTAHKMKVQRGSLKEDTSRNDNFRIKRYIAKYTINPAITHGIAHV 420

Query: 421 VGSLEVGKIADIVLWKPAFFGAKPSMILKSGMIAAAQMGDPNASIPTPQPVHYRMMFGAY 480
           VGSLEVGK+ADIVLWKPAFFGAKPSMILKSGMIAAAQMGDPNASIPTPQPVHYRMMFGAY
Sbjct: 421 VGSLEVGKLADIVLWKPAFFGAKPSMILKSGMIAAAQMGDPNASIPTPQPVHYRMMFGAY 480

Query: 481 GGGLKTSMTFVSQAAFDAGIGEQLKLNKPVVAVKNMRHLRKRDMIHNGATPKMEVDSETY 540
           GGGLKTSMTFVSQAAFDAGIGEQLKLNKPVVAVKNMR+LRKRDMIHNGATPKMEVD+ETY
Sbjct: 481 GGGLKTSMTFVSQAAFDAGIGEQLKLNKPVVAVKNMRNLRKRDMIHNGATPKMEVDAETY 540

Query: 541 EVRADGELLVCEPARSLPLAQRYFLF 566
           EVRADGELLVCEPA SLPLAQRYFLF
Sbjct: 541 EVRADGELLVCEPAVSLPLAQRYFLF 566


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.136    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,673,593
Number of extensions: 69471
Number of successful extensions: 180
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 180
Number of HSP's successfully gapped: 1
Length of query: 566
Length of database: 1,619,870
Length adjustment: 90
Effective length of query: 476
Effective length of database: 1,193,720
Effective search space: 568210720
Effective search space used: 568210720
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 133 (55.8 bits)