BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4603.p
         (467 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313992|ref|YP_003778084.1| extracellular solute-binding, f...   567   e-163
gi|300309614|ref|YP_003773706.1| sugar ABC transporter periplasm...    78   2e-15

>gi|300313992|ref|YP_003778084.1| extracellular solute-binding,
           family 1 protein [Herbaspirillum seropedicae SmR1]
          Length = 473

 Score =  567 bits (1461), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 294/421 (69%), Positives = 340/421 (80%), Gaps = 4/421 (0%)

Query: 49  GCER-NDEKAATPEASAAAVSEPVVLTALVWAPDWSEEMHRVADAFMHAHPEVRINLQFM 107
           GCER   E+++T E + A   + +VL ALVWAPDW+EEM RV D FMH HP VRINLQFM
Sbjct: 55  GCERAGKEESSTVELAPA--QDTLVLNALVWAPDWAEEMQRVCDGFMHEHPGVRINLQFM 112

Query: 108 IGDSVEENLKPRAATDSLPDIVSVNASPYTAALADQGMLADLGHTRAWGDLLAVLQREWT 167
           IG+SVEENLKPRA TDSLPDIVSVNASPYTA+LADQG+LADLG TR+W  LL +LQREWT
Sbjct: 113 IGNSVEENLKPRATTDSLPDIVSVNASPYTASLADQGLLADLGQTRSWHGLLDILQREWT 172

Query: 168 SPGGRRYGIPSGLATTLIYYNRDMFERAGISTPPGDFEAFLAAGAALRKAGFVPLALSGA 227
           +PGG R+G+PSG+ATTLIYY+ D+FERAGI   PGDFE FLAAGAALR+AG  PLALSG 
Sbjct: 173 APGGCRFGLPSGVATTLIYYHPDLFERAGIQALPGDFEQFLAAGAALRRAGITPLALSGG 232

Query: 228 FPNMLGNGPFSYGFANAVAN-VPDWRERIAKGSLQLDNADGIAIFSRLRTLMDKKMVQAD 286
           FPNMLGNGPFSYGFAN VA+  PDWR+ IA G+L LDNA G A+FSRLRTLM + +VQAD
Sbjct: 233 FPNMLGNGPFSYGFANLVASSTPDWRQHIANGTLALDNAQGWAVFSRLRTLMTRHLVQAD 292

Query: 287 CLRAGYDATLRQFAEGRAAMTFQGTWAAGKLVNTSGLRVGVFVPPWNDKGRPLKPVLGSE 346
           CLRAGYDATLRQFAEGRAAMTFQG+WAAG L+   G  VGVFVPPWNDK +P + V+GSE
Sbjct: 293 CLRAGYDATLRQFAEGRAAMTFQGSWAAGVLMQGRGQPVGVFVPPWNDKDQPRQAVIGSE 352

Query: 347 TGFAVAQRSDTRHRQAAAQFLDFLYGPGMSIWQAKRQNIPPMRVIAPEVSGDPALFALVQ 406
           TGFA+AQR   RHRQAAA+FLD+L+G G+ +WQ KRQNI P +  AP   GD ALFAL  
Sbjct: 353 TGFAIAQRISARHRQAAARFLDYLFGAGLPVWQGKRQNILPFKTPAPSAKGDAALFALAA 412

Query: 407 QMAGEAASGNTPGLYYSLLPVNTIEVLHPLLQAVLAGSQSPAHAARVLQDSIADQARLSA 466
            MA +AA+   PGLYYS LPVNTI+VLH LL AVL+G  +P  AAR LQ+SI+ QAR+  
Sbjct: 413 GMARDAAATGAPGLYYSYLPVNTIDVLHALLPAVLSGKTTPVQAARALQESISAQARVGG 472

Query: 467 R 467
           +
Sbjct: 473 K 473


>gi|300309614|ref|YP_003773706.1| sugar ABC transporter periplasmic
           protein [Herbaspirillum seropedicae SmR1]
          Length = 415

 Score = 77.8 bits (190), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 71/289 (24%), Positives = 129/289 (44%), Gaps = 11/289 (3%)

Query: 91  DAFMHAHPEVRINLQFMIGDSVEENLKPRAATDSLPDIVSVNASPYTAALADQGMLADLG 150
           D F  A+P+V I   F+  ++ +  L P   +   PDI++ +     A  A +G+L D+ 
Sbjct: 49  DEFKKANPDVDIKPSFIEEEAYKVQL-PGWLSTQAPDIINWHNGERMAFYASRGLLEDVS 107

Query: 151 H---TRAWGDLLAVLQREWTSPGGRRYGIPSGLATTLIYYNRDMFERAGISTPPGDFEAF 207
                  W D      +E +S  G++Y +P+   +  ++Y +D+F++ GI+  P  ++ F
Sbjct: 108 EDWKKNGW-DATYASTKEASSWHGKQYSVPTVYYSWGMFYRKDLFKKVGIAGEPKTWDEF 166

Query: 208 LAAGAALRKAGFVPLALSGAFPNMLGNGPFSYGFANAVANVPDWRERIAKGSLQLDNADG 267
           L A   L+ AG  P+A+ G     L  G F Y   +   N   + +++  G +   +A  
Sbjct: 167 LDACKKLKAAGIAPIAVGGRDAWTLA-GWFDY--LDLRINGNAFHQQLMAGDIAYTDARV 223

Query: 268 IAIFSRLRTLMDKKMVQADCLRAGYDATLRQFAEGRAAMTFQGTWAAGKLVNTSGLRVGV 327
             + +  ++L+D K    + L    D       +G+AAM   GT+ A          +G 
Sbjct: 224 KKVHTAWKSLIDNKYFIDNALSYDLDGAQPFLFQGKAAMMLMGTFIAKGFPAKLAPEMGY 283

Query: 328 FVPPWNDKGRPLKPVLGSETGFAVAQRSDTRHRQAAAQFLDFLYGPGMS 376
           F  P  D   P      +E+    A+    R++  A +F+ F+  P +S
Sbjct: 284 FQFPIIDANVPTAEEGPTESIHIPAK---ARNKADARRFIAFVGTPAIS 329


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.134    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,525,770
Number of extensions: 64617
Number of successful extensions: 209
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 208
Number of HSP's successfully gapped: 2
Length of query: 467
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 378
Effective length of database: 1,198,455
Effective search space: 453015990
Effective search space used: 453015990
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 132 (55.5 bits)