BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4597.p (363 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311168|ref|YP_003775260.1| ABC transporter ATPase [Herbasp... 270 1e-73 gi|300310896|ref|YP_003774988.1| oligopeptide ABC transporter AT... 266 2e-72 gi|300312477|ref|YP_003776569.1| oligopeptide ABC transporter AT... 228 5e-61 gi|300312478|ref|YP_003776570.1| dipeptide/oligopeptide/nickel A... 195 5e-51 gi|300310895|ref|YP_003774987.1| dipeptide/oligopeptide/nickel A... 192 4e-50 >gi|300311168|ref|YP_003775260.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 617 Score = 270 bits (690), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 148/291 (50%), Positives = 195/291 (67%), Gaps = 11/291 (3%) Query: 14 DIGGPRQPLLGVRQLLKHFPLKQQGLPWLRGPANAVRAVDGVSFDIMKGETLGVVGESGC 73 +I RQP+L VR L F +K +R V AV+ VSFD+ GETL +VGESGC Sbjct: 304 EIAAQRQPILKVRDLTTRFDVKSGIFGRVR---QRVHAVEKVSFDLYAGETLAIVGESGC 360 Query: 74 GKSTTARVLMQLIKQDSGELVFDGQTVGSRAMP---LRQFRRQAQMVFQDSYSSLNPRMT 130 GKSTT R L++L+ G++ F G+ + +P LRQ RR Q +FQD ++SL+PRMT Sbjct: 361 GKSTTGRSLLRLVDIAGGKVEFGGRDLAQ--LPRSELRQLRRDIQFIFQDPFASLDPRMT 418 Query: 131 IEDSIAFAPIVHGLPAREAIARARSLLARVGLQPERFAGRYPHELSGGQRQRVNIARALA 190 + SI +VHG+ A R +LL RVGL PE RYPHE SGGQRQR+ IARALA Sbjct: 419 VGYSIMEPMLVHGMK-EGAQERVDALLTRVGLTPEH-GQRYPHEFSGGQRQRICIARALA 476 Query: 191 LEPRLVILDEAVSALDKSVEAQVLNLLLDLKQEFGLTYLFISHDLNVVRFISDRVLVMYL 250 L P++VI DE+VSALD S++AQ++NL+LDL+ E G++++FISHD+ VV IS RV VMYL Sbjct: 477 LNPKIVIADESVSALDVSIQAQIVNLMLDLQAELGISFIFISHDMAVVERISHRVAVMYL 536 Query: 251 GQVVEVGPAEQVFDAPRHPYTRALLRSMPSMDPTRRTEQAPLAGDP-PNPI 300 GQ+VE+GP +F+ P+HPYTR L+ ++P DPT R L D P+PI Sbjct: 537 GQIVEIGPRRAIFENPQHPYTRKLMAAVPVADPTLRQPGKKLLTDEIPSPI 587 Score = 166 bits (420), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 100/255 (39%), Positives = 153/255 (60%), Gaps = 14/255 (5%) Query: 49 VRAVDGVSFDIMKGETLGVVGESGCGKSTTARVLMQLIKQDSGELVFDGQTVGSRA---- 104 V AV +SF + +GETL +VGESG GKS ++ +M+LI+ G++ R+ Sbjct: 24 VDAVRDLSFHVDQGETLAIVGESGSGKSVSSLAIMRLIEHGGGKIASGSMQFLRRSGQRL 83 Query: 105 -------MPLRQFR-RQAQMVFQDSYSSLNPRMTIEDSIAFAPIVH-GLPAREAIARARS 155 +R R + M+FQ+ +SLNP T+ + IA + +H GL A A A Sbjct: 84 DLAQADNATMRSIRGAEIAMIFQEPMTSLNPVFTVGEQIAESIRLHQGLGRAAAQAEALR 143 Query: 156 LLARVGL-QPERFAGRYPHELSGGQRQRVNIARALALEPRLVILDEAVSALDKSVEAQVL 214 +L V + + +R GR+PH+LSGG RQRV IA AL+ +P L+I DE +ALD +++AQ+L Sbjct: 144 MLEMVRIPEAKRVLGRHPHQLSGGMRQRVMIAMALSCKPSLLIADEPTTALDVTIQAQIL 203 Query: 215 NLLLDLKQEFGLTYLFISHDLNVVRFISDRVLVMYLGQVVEVGPAEQVFDAPRHPYTRAL 274 L+ L+QE + +FI+HD+ VV ++DRV+VM G+ VE +F AP HPYT++L Sbjct: 204 QLIRSLQQEMQMGVIFITHDMGVVAEVADRVVVMCRGEKVEENAVNPLFAAPAHPYTQSL 263 Query: 275 LRSMPSMDPTRRTEQ 289 L ++P + R T++ Sbjct: 264 LAAVPRLGSMRGTDK 278 >gi|300310896|ref|YP_003774988.1| oligopeptide ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 335 Score = 266 bits (679), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 144/326 (44%), Positives = 200/326 (61%), Gaps = 12/326 (3%) Query: 21 PLLGVRQLLKHFPLKQQGL--------PWLRGPANAVRAVDGVSFDIMKGETLGVVGESG 72 PL+ R + + F ++QG W R PA A+D V ++ GE +G+VGESG Sbjct: 7 PLIETRAVSRRFGERRQGWLQRQLQARGWSRPPA-ITHALDKVDLKVLPGEVVGLVGESG 65 Query: 73 CGKSTTARVLMQLIKQDSGELVFDGQTVGS-RAMPLRQFRRQAQMVFQDSYSSLNPRMTI 131 CGKST RV L+ G+++ +G+ S + + R Q QM+FQ+ Y+SLNPR+ I Sbjct: 66 CGKSTLGRVACGLLDPSDGQVLVNGRDRASLSSREEAEARLQVQMIFQNPYASLNPRLRI 125 Query: 132 EDSIAFAPIVHGLPAREAIARARSLLARVGLQPERFAGRYPHELSGGQRQRVNIARALAL 191 + + A V+G + L R GL P RYPH+ SGGQRQR+ IARALA+ Sbjct: 126 DQIVGEAAQVNGKVEGDLDDYVCQQLLRAGLDPA-LRDRYPHQFSGGQRQRIGIARALAV 184 Query: 192 EPRLVILDEAVSALDKSVEAQVLNLLLDLKQEFGLTYLFISHDLNVVRFISDRVLVMYLG 251 +P++++ DEAV+ALD S++AQ+LNL +DL+ E GLTYLFISHDL VV +SDRV++MYLG Sbjct: 185 QPQMLVCDEAVAALDVSIQAQILNLFMDLRAELGLTYLFISHDLGVVEHVSDRVVIMYLG 244 Query: 252 QVVEVGPAEQVFDAPRHPYTRALLRSMPSMDPTRRTEQAPLAGDPPNPINPPPGCRFHTR 311 +VVE P ++F P HPYT+ALL +P M R+ E + G+ P+P+NPP GC F+ R Sbjct: 245 RVVESAPVAELFGQPNHPYTQALLAEVPRMG-ARKKEFTAIKGEIPSPLNPPTGCHFNPR 303 Query: 312 CQFAQPVCQQRAPAFTEALPLHGVAC 337 C A C++ P E P H AC Sbjct: 304 CPHATQRCREEQPLLREIAPGHMSAC 329 >gi|300312477|ref|YP_003776569.1| oligopeptide ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 280 Score = 228 bits (582), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 131/259 (50%), Positives = 170/259 (65%), Gaps = 8/259 (3%) Query: 28 LLKHFPLKQQGLPWLRGPANAVRAVDGVSFDIMKGETLGVVGESGCGKSTTARVLMQLIK 87 L K +PLK+ L P ++AV+ VS + +GETLG+VGESGCGKST A++L+ L+ Sbjct: 21 LTKVYPLKR----GLFQPPGQLKAVNDVSLRLYRGETLGLVGESGCGKSTLAKMLLGLLP 76 Query: 88 QDSGELVFDGQTVGSRAMPLRQFRRQAQMVFQDSYSSLNPRMTIEDSIAFAPIVHGL-PA 146 SG ++ +GQ V + R Q +FQD YSSLNPR T+ + + +HG+ A Sbjct: 77 PTSGNVLINGQEVDPTER--KAHARHIQPIFQDPYSSLNPRKTVAEIVGLPLKLHGIGNA 134 Query: 147 REAIARARSLLARVGLQPERFAGRYPHELSGGQRQRVNIARALALEPRLVILDEAVSALD 206 E + + +L VG+ PER +YP++LSGGQRQRV IARAL L P ++I DE SALD Sbjct: 135 AERNRQVKDILDLVGM-PERTHAQYPNQLSGGQRQRVAIARALILRPDILICDEPTSALD 193 Query: 207 KSVEAQVLNLLLDLKQEFGLTYLFISHDLNVVRFISDRVLVMYLGQVVEVGPAEQVFDAP 266 SV+AQ+LNLLLDLK EFGLTYLFISHDL VV + DRV VM G +VE+ EQ+F P Sbjct: 194 VSVQAQILNLLLDLKAEFGLTYLFISHDLGVVEHLVDRVAVMNQGSIVELQSREQLFSEP 253 Query: 267 RHPYTRALLRSMPSMDPTR 285 +H YTR LL S + DP R Sbjct: 254 QHLYTRMLLASALTPDPGR 272 >gi|300312478|ref|YP_003776570.1| dipeptide/oligopeptide/nickel ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 334 Score = 195 bits (495), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 125/317 (39%), Positives = 176/317 (55%), Gaps = 20/317 (6%) Query: 39 LPWLRGPANAVRAVDGVSFDIMKGETLGVVGESGCGKSTTARVLMQLI----KQDSGELV 94 LP G +AVR +D F + +GE L +VGESGCGKS T+ LM L+ + + ++ Sbjct: 14 LPTENGMLHAVRGID---FQVRRGEMLCLVGESGCGKSMTSLALMGLLPRKAQCSADHIL 70 Query: 95 FDGQTVGSRAMPLRQFR----RQAQMVFQDSYSSLNPRMTIEDSIAFAPIVH-GLPAREA 149 FDG V MP +Q ++ M+FQ+ +SLNP T+ + + A + G+ EA Sbjct: 71 FDG--VDLHGMPDKQLMQLRGKRMAMIFQEPMTSLNPSYTLGNQLCEAMLQQPGVSRAEA 128 Query: 150 IARARSLLARVGL-QPERFAGRYPHELSGGQRQRVNIARALALEPRLVILDEAVSALDKS 208 RA LL R G+ E +YPH+LSGG RQRV IA +L P L+I DE +ALD + Sbjct: 129 RERALYLLHRTGISNAEDRLRQYPHQLSGGLRQRVMIAMSLMCNPDLIIADEPTTALDVT 188 Query: 209 VEAQVLNLLLDLKQEFGLTYLFISHDLNVVRFISDRVLVMYLGQVVEVGPAEQVFDAPRH 268 ++AQ+L ++ +L+QEFG +FI+HDL VV I+DRV VMY GQVVE Q+F PRH Sbjct: 189 IQAQILRMIRELQQEFGAAVIFITHDLGVVSRIADRVAVMYAGQVVETTDVAQLFAQPRH 248 Query: 269 PYTRALLRSMPSMDPTR-RTEQAPLAGDPPNPINPPPGCRFHTRCQFAQPVCQQRAPAFT 327 PYT+ LL +P T + + G P+ + GC F RC A C +R P Sbjct: 249 PYTQGLLNCIPVRGKTLPGSHLQAIPGVVPSLVGQVSGCAFRNRCAKADSGC-ERDPQMV 307 Query: 328 EALPL---HGVACLRYE 341 + + H CL+ + Sbjct: 308 QQGSVTAPHQARCLKLD 324 >gi|300310895|ref|YP_003774987.1| dipeptide/oligopeptide/nickel ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 330 Score = 192 bits (488), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 126/324 (38%), Positives = 181/324 (55%), Gaps = 22/324 (6%) Query: 23 LGVRQLLKHFPLKQQGLPWLRGPANAVRAVDGVSFDIMKGETLGVVGESGCGKSTTARVL 82 L VR L HF + LP AVD VS + +G LG+VGESG GKS T + Sbjct: 6 LEVRNLRTHFFTPEGVLP----------AVDDVSLSVGRGRILGLVGESGSGKSVTGFSI 55 Query: 83 MQLI----KQDSGELVFDGQT-VGSRAMPLRQFR-RQAQMVFQDSYSSLNPRMTIEDSIA 136 + ++ + GE++F G+ V LR+ + + M+FQD +LNP + +E + Sbjct: 56 LGMVDAPGRIVGGEILFQGRDLVRMDKTSLRELQGNRIAMIFQDPMMTLNPVLKVEAQMV 115 Query: 137 FAPIVHGLPARE-AIARARSLLARVGL-QPERFAGRYPHELSGGQRQRVNIARALALEPR 194 A + H +R+ A AR L +G+ PE YPH+LSGG RQRV IA A+ +P Sbjct: 116 DAVLAHSKVSRQQARELARDTLGMMGIASPEERLQAYPHQLSGGMRQRVAIAIAMLHKPD 175 Query: 195 LVILDEAVSALDKSVEAQVLNLLLDLKQEFGLTYLFISHDLNVVRFISDRVLVMYLGQVV 254 L+I DE +ALD +++AQ+L+ + L ++ G ++I+HDL+VV ++D V VMY G++V Sbjct: 176 LIIADEPTTALDVTIQAQILSEVQKLARQHGTALIWITHDLSVVAGLADEVAVMYAGRIV 235 Query: 255 EVGPAEQVFDAPRHPYTRALLRSMPSMDPT-RRTEQAPLAGDPPNPINPPPGCRFHTRCQ 313 E G + V DAP HPYT+ L+ S+PS + R Q P G PN ++ PP C F RC+ Sbjct: 236 EQGSVDAVLDAPLHPYTQGLIGSLPSNNRRGARLRQIP--GMTPNLLHLPPTCAFAARCE 293 Query: 314 FAQPVCQQRAPAFTEALPLHGVAC 337 C APA +E LP H V C Sbjct: 294 RLSQQCLV-APAISEPLPAHRVRC 316 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.138 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,127,791 Number of extensions: 46805 Number of successful extensions: 560 Number of sequences better than 1.0e-08: 130 Number of HSP's gapped: 355 Number of HSP's successfully gapped: 143 Length of query: 363 Length of database: 1,619,870 Length adjustment: 86 Effective length of query: 277 Effective length of database: 1,212,660 Effective search space: 335906820 Effective search space used: 335906820 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 131 (55.1 bits)