BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4592.p (555 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313989|ref|YP_003778081.1| ABC transporter ATPase [Herbasp... 1123 0.0 gi|300310722|ref|YP_003774814.1| ABC transporter ATPase [Herbasp... 343 2e-95 gi|300311530|ref|YP_003775622.1| ABC transporter ATPase [Herbasp... 233 3e-62 gi|300311473|ref|YP_003775565.1| ABC transporter ATPase [Herbasp... 221 1e-58 gi|300312621|ref|YP_003776713.1| ABC transporter ATPase [Herbasp... 86 6e-18 >gi|300313989|ref|YP_003778081.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 555 Score = 1123 bits (2904), Expect = 0.0, Method: Compositional matrix adjust. Identities = 553/555 (99%), Positives = 554/555 (99%) Query: 1 MAQYVFTMNRVGKIVPPKRQILKDISLSFFPGAKIGVLGLNGSGKSTLLKIMAGIDKEIE 60 MAQYVFTMNRVGKIVPPKRQILKDISLSFFPGAKIGVLGLNGSGKSTLLKIMAGIDKEIE Sbjct: 1 MAQYVFTMNRVGKIVPPKRQILKDISLSFFPGAKIGVLGLNGSGKSTLLKIMAGIDKEIE 60 Query: 61 GEAIPMPNLNIGYLPQEPQLDPDKTVRQEVESALGEVFEAQAKLDAVYAAYAEEDADFDA 120 GEAIPMPNLNIGYLPQEPQLD +KTVRQEVESALGEVFEAQAKLDAVYAAYAEEDADFDA Sbjct: 61 GEAIPMPNLNIGYLPQEPQLDAEKTVRQEVESALGEVFEAQAKLDAVYAAYAEEDADFDA 120 Query: 121 LATEQARLEAIIAAADGNSLNQQLEMAADALRLPPWDAKIGVLSGGEKRRVALCKLLLSK 180 LATEQARLEAIIAAADGNSLNQQLEMAADALRLPPWDAKIGVLSGGEKRRVALCKLLLSK Sbjct: 121 LATEQARLEAIIAAADGNSLNQQLEMAADALRLPPWDAKIGVLSGGEKRRVALCKLLLSK 180 Query: 181 PDMLLLDEPTNHLDAESVDWLEQFLQRFPGTVVAITHDRYFLDNAAEWILELDRGHGIPW 240 PDMLLLDEPTNHLDAESVDWLEQFLQRFPGTVVAITHDRYFLDNAAEWILELDRGHGIPW Sbjct: 181 PDMLLLDEPTNHLDAESVDWLEQFLQRFPGTVVAITHDRYFLDNAAEWILELDRGHGIPW 240 Query: 241 KGNYSSWLEQKEARLKQEEASESARQKTIAKELEWVRQNPKGRQAKSKARLARFNELSEY 300 KGNYSSWLEQKEARLKQEEASESARQKTIAKELEWVRQNPKGRQAKSKARLARFNELSEY Sbjct: 241 KGNYSSWLEQKEARLKQEEASESARQKTIAKELEWVRQNPKGRQAKSKARLARFNELSEY 300 Query: 301 EYQKRNETQEIFIPVAERLGNEVIEFKNVSKGYGDRLLIDDLNFKIPAGAIVGIIGPNGA 360 EYQKRNETQEIFIPVAERLGNEVIEFKNVSKGYGDRLLIDDLNFKIPAGAIVGIIGPNGA Sbjct: 301 EYQKRNETQEIFIPVAERLGNEVIEFKNVSKGYGDRLLIDDLNFKIPAGAIVGIIGPNGA 360 Query: 361 GKSTLFRMLAGRETPDSGEVVLGPTVKVSLVDQSREDLGNKKTVFEDVSGGADILTVGRF 420 GKSTLFRMLAGRETPDSGEVVLGPTVKVSLVDQSREDLGNKKTVFEDVSGGADILTVGRF Sbjct: 361 GKSTLFRMLAGRETPDSGEVVLGPTVKVSLVDQSREDLGNKKTVFEDVSGGADILTVGRF 420 Query: 421 EMPSRAYLGRFNFKGGDQQKIVGNLSGGERGRLHLAKTLLQGGNVLLLDEPSNDLDVETL 480 EMPSRAYLGRFNFKGGDQQKIVGNLSGGERGRLHLAKTLLQGGNVLLLDEPSNDLDVETL Sbjct: 421 EMPSRAYLGRFNFKGGDQQKIVGNLSGGERGRLHLAKTLLQGGNVLLLDEPSNDLDVETL 480 Query: 481 RALEDALLEFAGTVLVISHDRWFLDRIATHIIAFEGDSQVTFFDGNYQEYEADKKKRLGE 540 RALEDALLEFAGTVLVISHDRWFLDRIATHIIAFEGDSQVTFFDGNYQEYEADKKKRLGE Sbjct: 481 RALEDALLEFAGTVLVISHDRWFLDRIATHIIAFEGDSQVTFFDGNYQEYEADKKKRLGE 540 Query: 541 EAAKPKRIRYKPVTR 555 EAAKPKRIRYKPVTR Sbjct: 541 EAAKPKRIRYKPVTR 555 >gi|300310722|ref|YP_003774814.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 640 Score = 343 bits (879), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 202/513 (39%), Positives = 300/513 (58%), Gaps = 5/513 (0%) Query: 21 ILKDISLSFFPGAKIGVLGLNGSGKSTLLKIMAGIDKEIEGEAIPMPNLNIGYLPQEPQL 80 +L S G +IG++G NG+GKS+LLKI+AG K +G + NL I Y+ QEP Sbjct: 18 LLDHAEFSLETGERIGLIGRNGTGKSSLLKIIAGRSKLDDGLLVMQQNLKIAYVDQEPHF 77 Query: 81 DPDKTVRQEVESALGEVFEAQAKLDAVYAAYAEEDADFDALATEQARLEAIIAAADGNSL 140 + TV V S LGE+ A+ +A+ + ++ D AL +++ ++ AAD S+ Sbjct: 78 PEEMTVFDAVASGLGELPALLAEYEAITGQFGGDNDD--ALLERMHQIQTVLDAADAWSI 135 Query: 141 NQQLEMAADALRLPPWDAKIGVLSGGEKRRVALCKLLLSKPDMLLLDEPTNHLDAESVDW 200 ++E D L L DA+IG LSGG K+RVAL L+ PD+LLLDEPTNHLD S+ W Sbjct: 136 GNKVETTLDKLNLNR-DARIGELSGGMKKRVALACGLVGNPDVLLLDEPTNHLDFGSILW 194 Query: 201 LEQFLQRFPGTVVAITHDRYFLDNAAEWILELDRGHGIPWKGNYSSWLEQKEARLKQEEA 260 LE L+ F G+++ ITHDR FLDN + I+ELDRG + + GN++++ +K L EE Sbjct: 195 LEGLLRDFKGSILFITHDRSFLDNVSTRIIELDRGKILSFPGNFTTYQTRKAELLANEEV 254 Query: 261 SESARQKTIAKELEWVRQNPKGRQAKSKARLARFNELSEYEYQKRNETQEIFIPVA--ER 318 + K +A+E W+R+ + R+ + + R+ R L ++R ++ + V ER Sbjct: 255 ENAKFDKFLAQEEVWIRKGVQARRTRDEGRVRRLEALRVQRSERRERQGQVKLEVGTGER 314 Query: 319 LGNEVIEFKNVSKGYGDRLLIDDLNFKIPAGAIVGIIGPNGAGKSTLFRMLAGRETPDSG 378 G V E +NV+K YG + ++ D + + G VG+IG NGAGK+TL +++ G E PDSG Sbjct: 315 SGKIVAELENVNKAYGPKTIVRDFSTILMRGDKVGLIGQNGAGKTTLLKLILGEEAPDSG 374 Query: 379 EVVLGPTVKVSLVDQSREDLGNKKTVFEDVSGGADILTVGRFEMPSRAYLGRFNFKGGDQ 438 V G ++V+ DQ R L + T+ + ++ G+D + V YL F F Sbjct: 375 TVKQGTKMQVAYFDQMRAQLNEETTLADTIAPGSDWVEVNGQRKHVMTYLSDFLFAPERA 434 Query: 439 QKIVGNLSGGERGRLHLAKTLLQGGNVLLLDEPSNDLDVETLRALEDALLEFAGTVLVIS 498 + V LSGGER RL LA+ + NVL+LDEP+NDLD++TL LE+ L E+ GTV ++S Sbjct: 435 RSPVRTLSGGERNRLLLARLFAKPANVLVLDEPTNDLDIDTLELLEELLEEYEGTVFLVS 494 Query: 499 HDRWFLDRIATHIIAFEGDSQVTFFDGNYQEYE 531 HDR FLD + T +IA EG+ + G Y ++E Sbjct: 495 HDRMFLDNVVTQVIASEGNGVWREYVGGYSDWE 527 Score = 112 bits (280), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 79/252 (31%), Positives = 121/252 (48%), Gaps = 35/252 (13%) Query: 323 VIEFKNVSKGYGDRLLIDDLNFKIPAGAIVGIIGPNGAGKSTLFRMLAGRETPDSGEVVL 382 VI + +G L+D F + G +G+IG NG GKS+L +++AGR D G +V+ Sbjct: 3 VISLSDAQLAFGHVALLDHAEFSLETGERIGLIGRNGTGKSSLLKIIAGRSKLDDGLLVM 62 Query: 383 GPTVKVSLVDQSREDLGNKKTVFEDVSGGADIL---------TVGRF------EMPSRAY 427 +K++ VDQ + TVF+ V+ G L G+F + R + Sbjct: 63 QQNLKIAYVDQE-PHFPEEMTVFDAVASGLGELPALLAEYEAITGQFGGDNDDALLERMH 121 Query: 428 LGRFNFKGGDQQKI------------------VGNLSGGERGRLHLAKTLLQGGNVLLLD 469 + D I +G LSGG + R+ LA L+ +VLLLD Sbjct: 122 QIQTVLDAADAWSIGNKVETTLDKLNLNRDARIGELSGGMKKRVALACGLVGNPDVLLLD 181 Query: 470 EPSNDLDVETLRALEDALLEFAGTVLVISHDRWFLDRIATHIIAFEGDSQVTFFDGNYQE 529 EP+N LD ++ LE L +F G++L I+HDR FLD ++T II + ++ F GN+ Sbjct: 182 EPTNHLDFGSILWLEGLLRDFKGSILFITHDRSFLDNVSTRIIELD-RGKILSFPGNFTT 240 Query: 530 YEADKKKRLGEE 541 Y+ K + L E Sbjct: 241 YQTRKAELLANE 252 Score = 78.2 bits (191), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 77/284 (27%), Positives = 120/284 (42%), Gaps = 73/284 (25%) Query: 2 AQYVFTMNRVGKIVPPKRQILKDISLSFFPGAKIGVLGLNGSGKSTLLKIMAGIDKEIEG 61 + V + V K PK I++D S G K+G++G NG+GK+TLLK++ G + G Sbjct: 316 GKIVAELENVNKAYGPK-TIVRDFSTILMRGDKVGLIGQNGAGKTTLLKLILGEEAPDSG 374 Query: 62 EAIPMPNLNIGYLPQ-EPQLDPDKTVRQEVESALGEV-FEAQAKLDAVYAAYAEEDADFD 119 + + Y Q QL+ + T+ + V Q K Y + DF Sbjct: 375 TVKQGTKMQVAYFDQMRAQLNEETTLADTIAPGSDWVEVNGQRKHVMTYLS------DF- 427 Query: 120 ALATEQARLEAIIAAADGNSLNQQLEMAADALRLPPWDAKIGVLSGGEKRRVALCKLLLS 179 A E+AR + + LSGGE+ R+ L +L Sbjct: 428 LFAPERAR------------------------------SPVRTLSGGERNRLLLARLFAK 457 Query: 180 KPDMLLLDEPTNHLDAESVDWLEQFLQRFPGTVVAITHDRYFLDNAAEWILELDRGHGIP 239 ++L+LDEPTN LD ++++ LE+ L+ + GTV ++HDR FLDN ++ G+G+ Sbjct: 458 PANVLVLDEPTNDLDIDTLELLEELLEEYEGTVFLVSHDRMFLDNVVTQVIA-SEGNGV- 515 Query: 240 WK---GNYSSWLEQKEARLKQEEASESARQKTIAKELEWVRQNP 280 W+ G YS +W RQ P Sbjct: 516 WREYVGGYS----------------------------DWERQRP 531 >gi|300311530|ref|YP_003775622.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 532 Score = 233 bits (594), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 180/549 (32%), Positives = 278/549 (50%), Gaps = 66/549 (12%) Query: 19 RQILKDISLSFFPGAKIGVLGLNGSGKSTLLKIMAGIDKEIEGEAIPMPNLNIGYLPQEP 78 + + ++IS+ F G + G++G NG GKST +KI+ G + G N +G L Q+ Sbjct: 14 KPLFENISVKFGDGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDVNERLGKLRQDQ 73 Query: 79 QLDPDKTVRQEVESALGEVFEAQAKLDAVYAAYAEEDADFDALATEQARLEAIIAAADGN 138 + V V E++ A ++ DA+YA D D+ + A LEA A DG Sbjct: 74 FAYEEMRVLDVVMMGHVEMWAAMSERDAIYANPDATDDDY----MKAADLEAKFAEYDGY 129 Query: 139 SLNQQLEMAADALRLP---PWDAKIGVLSG---GEKRRVALCKLLLSKPDMLLLDEPTNH 192 + E A L L P + G +S G K RV L + L S PD+LLLDEPTN+ Sbjct: 130 TA----EARAGELLLGVGVPIEQHNGPMSNVAPGWKLRVLLAQALFSNPDILLLDEPTNN 185 Query: 193 LDAESVDWLEQFLQRFPGTVVAITHDRYFLDNAAEWILELDRGHGIPWKGNYSSW-LEQK 251 LD ++ WLE+ L T++ I+HDR+FL+ + ++D G + GNY + L Sbjct: 186 LDINTIRWLEEVLNERNSTMIIISHDRHFLNQVCTHMADMDYGTLKIYPGNYDDYMLASS 245 Query: 252 EARLKQEEASESARQKTIAKELEWVRQ----NPKGRQAKSKARL------------ARFN 295 +AR +Q A+ A++K +A+ ++VR+ K RQA S+A+ +R N Sbjct: 246 QARAQQLAANAKAKEK-VAELQDFVRRFSANKSKARQATSRAKQIDKIKVEDIKPSSRVN 304 Query: 296 ELSEYEYQKRNETQEIFIPVAERLGNEVIEFKNVSKGYGDRLLIDDLNFKIPAGAIVGII 355 +E +K+ L +E + ++K Y DR + + + + AG + II Sbjct: 305 PFIRFEGEKK-------------LHRLAVETQGITKTY-DRDIFKNFSIMVEAGEKIAII 350 Query: 356 GPNGAGKSTLFRMLAGRET---PDSGEVVLGPTVKVSLVDQSREDLGNKKTVFEDVSGGA 412 G NGAGK+TL R + G T PD G V V + Q E+ +GG Sbjct: 351 GANGAGKTTLLRSIGGDVTGLHPDGGLVKWAENANVGYMPQDPT---------EEFAGGE 401 Query: 413 DILT-VGRF------EMPSRAYLGRFNFKGGDQQKIVGNLSGGERGRLHLAKTLLQGGNV 465 + +G++ + R LGR F G D +K V LSGGE+GR+ K +L NV Sbjct: 402 TLTDWMGKWTQEGDDDQAVRGILGRLLFSGDDVKKSVKVLSGGEKGRMMYGKLMLGRHNV 461 Query: 466 LLLDEPSNDLDVETLRALEDALLEFAGTVLVISHDRWFLDRIATHIIAFEGDSQVTFFDG 525 LL+DEP+N +D+E++ +L AL ++AGT++ +SHDR F+ +AT I+ + D QV F G Sbjct: 462 LLMDEPTNHMDMESIESLNIALEKYAGTLIFVSHDREFVSSLATRILEVK-DGQVIDFQG 520 Query: 526 NYQEYEADK 534 Y++Y A + Sbjct: 521 GYEDYLASQ 529 >gi|300311473|ref|YP_003775565.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 660 Score = 221 bits (564), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 166/539 (30%), Positives = 273/539 (50%), Gaps = 52/539 (9%) Query: 21 ILKDISLSFFPGAKIGVLGLNGSGKSTLLKIMAGIDKEIEGEAIPMPNLNIGYLPQE-PQ 79 +L+++ L+ PG KIG++G NG+GKS+L ++ G +G + Y+ QE P Sbjct: 16 LLENVDLTLNPGDKIGLIGANGAGKSSLFAMLRGELHADQGNIDFPARWRMAYVAQETPA 75 Query: 80 LDPDKTVRQEVESALGEVFEAQAKLDAVYA--AYAEEDADFDALATEQARLEAIIAAADG 137 LD R +E A+ + A L + A A AE D A L +A AD Sbjct: 76 LD-----RPAIEYAI----DGDAHLRQLEAELARAEAQPDDKHDGNHIAELHTALADADA 126 Query: 138 NSLNQQLE--MAADALRLPPWDAKIGVLSGGEKRRVALCKLLLSKPDMLLLDEPTNHLDA 195 ++ + E + L + + SGG + R+ L + L+ D+LLLDEPTNHLD Sbjct: 127 YTVRSRAEQLLLGLGFSLEQMERPVASFSGGWRMRLNLAQALMCPSDLLLLDEPTNHLDL 186 Query: 196 ESVDWLEQFLQRFPGTVVAITHDRYFLDNAAEWILELDRGHGIPWKGNYSSWLEQKEARL 255 +++ WLE +L+R+ GT++ I+HDR FLD I+ +D + GNYS++ Q+ A+L Sbjct: 187 DAIIWLEDWLKRYEGTLLIISHDRDFLDGVVNVIVHIDDRKLKRYSGNYSAFERQRSAQL 246 Query: 256 KQEEASESARQKTIAKELEWV----RQNPKGRQAKSKAR-LARFNEL------SEYEYQK 304 + +Q+ A ++ + K RQA+S+ + L++ EL +E+ ++ Sbjct: 247 ELMAGMIEKQQRQRAHLQSFIDRFKAKATKARQAQSRMKALSKMEELAPLRAAAEFSFEF 306 Query: 305 RNETQEIFIPVAERLGNEVIEFKNVSKGYG----------DRLLIDDLNFKIPAGAIVGI 354 R P++ N ++ + V+ GY D++++ ++F + G +G+ Sbjct: 307 RE-------PLSA--PNPLLVMEKVNAGYHIEGKNGAPDEDKIIVHGIDFSLQNGQRIGL 357 Query: 355 IGPNGAGKSTLFRMLAGRETPDSGEVVLGPTVKVSLVDQSREDL--GNKKTVFEDVSGGA 412 +G NGAGKSTL + +AG P SG LG + + Q + ++ ++ ++ Sbjct: 358 LGVNGAGKSTLIKTVAGEIDPLSGTARLGKGLVIGYFAQHQVEMLRHDESPLWHLTRLAP 417 Query: 413 DILTVGRFEMPSRAYLGRFNFKGGDQQKIVGNLSGGERGRLHLAKTLLQGGNVLLLDEPS 472 D+ E R +LG FNF G + SGGE+ RL LA + Q N+LLLDEP+ Sbjct: 418 DVR-----EQELRNFLGSFNFNGTMATSSIAPFSGGEKARLALALIVWQRPNLLLLDEPT 472 Query: 473 NDLDVETLRALEDALLEFAGTVLVISHDRWFLDRIATHIIAFEGDSQVTFFDGNYQEYE 531 N LD+ET AL AL +F GT++++SHDR L R T + ++ FDG+ +Y+ Sbjct: 473 NHLDLETREALTMALAQFEGTLVLVSHDRHLL-RATTDQFLIVAEGKLQPFDGDLDDYK 530 >gi|300312621|ref|YP_003776713.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 257 Score = 86.3 bits (212), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 62/188 (32%), Positives = 98/188 (52%), Gaps = 12/188 (6%) Query: 324 IEFKNVSKGYGDRLLIDDLNFKIPAGAIVGIIGPNGAGKSTLFRMLAGRETPDSGEV--- 380 + F NV+K +GD +I++ +I +G +V ++GP+G GKSTL M AG E P SG V Sbjct: 3 LSFNNVAKHFGDLHVIEEFTREIASGELVALVGPSGCGKSTLLHMAAGLEKPSSGSVAGD 62 Query: 381 ---VLGPTVKVSLVDQSREDLGNKKTVFEDVSGGADILTVGRFEMPSRAYLGRFNFK-GG 436 + GP + +L+ Q L T+ ++V+ + +V + + +A + N K G Sbjct: 63 GQTIRGPHPERTLMFQENA-LYPWLTLQQNVALALEFQSVDKKKAAEQARVWLENVKLKG 121 Query: 437 DQQKIVGNLSGGERGRLHLAKTLLQGGNVLLLDEPSNDLDVETLRALEDALLEF----AG 492 + +SGG R R LA+ + LLLDEP LD T L+DAL + Sbjct: 122 FEHYYPHQVSGGMRQRAALARAFISQPKALLLDEPFGALDALTRMTLQDALRDLIRQQGP 181 Query: 493 TVLVISHD 500 TV++++HD Sbjct: 182 TVVLVTHD 189 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.316 0.136 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,606,427 Number of extensions: 65430 Number of successful extensions: 821 Number of sequences better than 1.0e-08: 85 Number of HSP's gapped: 735 Number of HSP's successfully gapped: 108 Length of query: 555 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 465 Effective length of database: 1,193,720 Effective search space: 555079800 Effective search space used: 555079800 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 133 (55.8 bits)