BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4588.p
         (224 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313985|ref|YP_003778077.1| cyclic nucleotide-binding prote...   442   e-126
gi|300311883|ref|YP_003775975.1| cyclic nucleotide-binding prote...   199   2e-52

>gi|300313985|ref|YP_003778077.1| cyclic nucleotide-binding protein
           [Herbaspirillum seropedicae SmR1]
          Length = 224

 Score =  442 bits (1138), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 219/224 (97%), Positives = 219/224 (97%)

Query: 1   MAQLLQQYDWFAALAPEHRALAAATTQLARYAADAFVARRGELSQYWIGVHEGLIKLAVY 60
           MAQLLQQYDWFAALA EHRALAAATTQ  RYAADAFVARRGELSQYWIGVHEGLIKLAVY
Sbjct: 1   MAQLLQQYDWFAALASEHRALAAATTQRVRYAADAFVARRGELSQYWIGVHEGLIKLAVY 60

Query: 61  NIDGRSSTLSGVPEGGWCGEGSVIKREPRRYDVIAIRASQILLVPADTFHRLMAESLPFN 120
           NIDGRSSTLSGVPEGGWCGEGSVIKREPRRYDVIAIRASQILLVPADTFH LMAESLPFN
Sbjct: 61  NIDGRSSTLSGVPEGGWCGEGSVIKREPRRYDVIAIRASQILLVPADTFHCLMAESLPFN 120

Query: 121 AFVIGQLNERMGQFIATVQNERLLDVDARVAQAIAQLFHPMLYPRTSKVLELSQEEIGLL 180
           AFVIGQLNERMGQFIATVQNERLLDVDARVAQAIAQLFHPMLYPRTSKVLELSQEEIGLL
Sbjct: 121 AFVIGQLNERMGQFIATVQNERLLDVDARVAQAIAQLFHPMLYPRTSKVLELSQEEIGLL 180

Query: 181 TGLSRQRVNQTMRRLAELGLVEISYQSIRVVDLDGLRAFGMASL 224
           TGLSRQRVNQ MRRLAELGLVEISYQSIRVVDLDGLRAFGMASL
Sbjct: 181 TGLSRQRVNQAMRRLAELGLVEISYQSIRVVDLDGLRAFGMASL 224


>gi|300311883|ref|YP_003775975.1| cyclic nucleotide-binding protein
           [Herbaspirillum seropedicae SmR1]
          Length = 225

 Score =  199 bits (505), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 94/217 (43%), Positives = 146/217 (67%)

Query: 3   QLLQQYDWFAALAPEHRALAAATTQLARYAADAFVARRGELSQYWIGVHEGLIKLAVYNI 62
           ++L +  W  AL  E  A         +  A  +V R+G+   +WIGVHEGL+K++  + 
Sbjct: 7   RMLAKSIWAQALTEEQLARVETEVVSRKIPAGGYVCRKGDAVTHWIGVHEGLLKMSSVSP 66

Query: 63  DGRSSTLSGVPEGGWCGEGSVIKREPRRYDVIAIRASQILLVPADTFHRLMAESLPFNAF 122
           +G++ + +G+  GGW GEGS++K EPR+YDV+A+R S++L +P  T+  L+  S+PFN F
Sbjct: 67  EGKTVSFAGMANGGWLGEGSLLKDEPRKYDVVALRESELLYMPKATYIWLLDNSIPFNRF 126

Query: 123 VIGQLNERMGQFIATVQNERLLDVDARVAQAIAQLFHPMLYPRTSKVLELSQEEIGLLTG 182
           ++ QLNER+  FI+ V+ +R+L+ DARVA+ +A LF+P L P     L++SQEE+G L+G
Sbjct: 127 LVTQLNERLALFISLVEYDRMLEPDARVARCLAALFNPYLNPGIGLNLQISQEEVGNLSG 186

Query: 183 LSRQRVNQTMRRLAELGLVEISYQSIRVVDLDGLRAF 219
            SRQR NQ ++ L + GL+++ Y SI + DL+GLR F
Sbjct: 187 TSRQRANQALQVLEKAGLLKVDYGSITINDLEGLRQF 223


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.136    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 580,694
Number of extensions: 22413
Number of successful extensions: 72
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 73
Number of HSP's successfully gapped: 2
Length of query: 224
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 142
Effective length of database: 1,231,600
Effective search space: 174887200
Effective search space used: 174887200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 129 (54.3 bits)