BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4587.p
         (220 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313984|ref|YP_003778076.1| hypothetical protein Hsero_4702...   283   6e-78

>gi|300313984|ref|YP_003778076.1| hypothetical protein Hsero_4702
           [Herbaspirillum seropedicae SmR1]
          Length = 232

 Score =  283 bits (725), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 179/232 (77%), Positives = 195/232 (84%), Gaps = 12/232 (5%)

Query: 1   MAIVTHHHLQLRELRFAAPARVRLWKGAATLRSGGATVELRQGESFTVPSFVRFSCLAHP 60
           MAIVTHHHL L +LRFAAPARVR+WKGAATL+SGG  VEL +GESFTVPSFVRF+CLAHP
Sbjct: 1   MAIVTHHHLHLHDLRFAAPARVRVWKGAATLKSGGVAVELGEGESFTVPSFVRFACLAHP 60

Query: 61  QVSVQGMRPAVWSLALEAQSAADLDRAADTSKPHARRLAAAIFAQPAANWRAESIARDWQ 120
           +VS QGMRPAVWSLALE QS+ADL+RAADTSKPHARRLAAAIFAQPAA+W AE IA DWQ
Sbjct: 61  RVSAQGMRPAVWSLALETQSSADLERAADTSKPHARRLAAAIFAQPAAHWCAERIAGDWQ 120

Query: 121 MSAARLRALLFAEGESLRSLVREQRVAWVLAALARMED----AGVEPAAAGFASLAALQR 176
           +S ARLRALLFAEGESLRSLVREQRVAWVLA LARM+D    +   PAAAGFA+L ALQR
Sbjct: 121 LSTARLRALLFAEGESLRSLVREQRVAWVLAQLARMDDAGAASAPAPAAAGFATLPALQR 180

Query: 177 ACQDLIGLPPEIARRAISLLSSSPLP---PSLQPEQQS-----RRPRYRPYF 220
           ACQDLIGLPP  A RAISLLSSS  P   P++   Q S     R+PRYRPYF
Sbjct: 181 ACQDLIGLPPGTASRAISLLSSSVAPAALPAIGAAQHSGGDAPRQPRYRPYF 232


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.130    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 601,497
Number of extensions: 21658
Number of successful extensions: 117
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 116
Number of HSP's successfully gapped: 1
Length of query: 220
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 138
Effective length of database: 1,231,600
Effective search space: 169960800
Effective search space used: 169960800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 129 (54.3 bits)