BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4586.p (362 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313983|ref|YP_003778075.1| histidinol-phosphate aminotrans... 667 0.0 gi|300313353|ref|YP_003777445.1| histidinol-phosphate aminotrans... 134 1e-32 gi|300311875|ref|YP_003775967.1| aspartate/tyrosine/aromatic ami... 77 3e-15 >gi|300313983|ref|YP_003778075.1| histidinol-phosphate aminotransferase 1 protein [Herbaspirillum seropedicae SmR1] Length = 360 Score = 667 bits (1721), Expect = 0.0, Method: Compositional matrix adjust. Identities = 329/359 (91%), Positives = 344/359 (95%) Query: 1 MSKFWSPIVSRLTPYTPGEQPKLARLVKLNTNESPYGPSPLALQAIAAEVNDSLRLYPNP 60 MSKFWSPIVSRLTPYTPGEQPK+ARLVKLNTNESPYGPSPLALQAIA EV+DSLRLYPNP Sbjct: 1 MSKFWSPIVSRLTPYTPGEQPKIARLVKLNTNESPYGPSPLALQAIAREVSDSLRLYPNP 60 Query: 61 DAEPLKLAIARRHAADGISAREVFVGNGSDEVLAHAFHALLQHGKPILFPDITYSFYPTY 120 DAEPLK AIARRHAADG+S REVFVGNGSDEVLAHAFHALLQHGKPILFPDITYSFYPTY Sbjct: 61 DAEPLKQAIARRHAADGVSVREVFVGNGSDEVLAHAFHALLQHGKPILFPDITYSFYPTY 120 Query: 121 AGLYQIEYRAVPLTEDFTLRSEDYLGHGEAIGGIIFPNPNAPTGCLLGLEDVERILQGNP 180 AGLYQ+EYRAVPL EDFTLRSEDYLGHG+AIGGIIFPNPNAPTGCLLGL DVERILQGNP Sbjct: 121 AGLYQVEYRAVPLAEDFTLRSEDYLGHGQAIGGIIFPNPNAPTGCLLGLADVERILQGNP 180 Query: 181 QRVVVVDEAYIDFGGQSAIPLVQRYPNLLVVQTFSKSRALAGMRVGFAIGHADLIDALER 240 +RVVVVDEAYIDFGGQSAIPLVQRYPNLLVVQT SKSRALAGMRVGFA+GHADLIDALER Sbjct: 181 ERVVVVDEAYIDFGGQSAIPLVQRYPNLLVVQTLSKSRALAGMRVGFAVGHADLIDALER 240 Query: 241 VKNSFNSYPLDRPAIAGATAAIEDEDYFQQTCGMVIASRTALVAQLEGLGFEVLPSAANF 300 VKNSFNSYPLDRPAIAGATAAIEDEDYF++TC MVIASRTAL AQL GLGF+VLPSAANF Sbjct: 241 VKNSFNSYPLDRPAIAGATAAIEDEDYFRKTCNMVIASRTALAAQLAGLGFQVLPSAANF 300 Query: 301 VFARHPRHDAAELAASLRGDGIIVRHFKSERIQQFLRITIGTDADCATLVDALRRHLGQ 359 +F RHP+HDAA+LAA+LR DGIIVRHFKSERI QFLRITIGTD DC LV+ALRRHLGQ Sbjct: 301 LFVRHPQHDAAQLAAALRADGIIVRHFKSERISQFLRITIGTDEDCGVLVEALRRHLGQ 359 >gi|300313353|ref|YP_003777445.1| histidinol-phosphate aminotransferase 1 protein [Herbaspirillum seropedicae SmR1] Length = 372 Score = 134 bits (336), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 122/362 (33%), Positives = 181/362 (50%), Gaps = 21/362 (5%) Query: 8 IVSRLTPYTPGEQ----PKLARLVKLNTNESPYG-PSPLALQAIAAEVNDSLRLYPNPDA 62 I + + P G Q P +VKL+ E+PY P+ L Q L YP P Sbjct: 17 IANVIRPVVRGWQSYHVPSAEGMVKLDAMENPYLLPAELREQLAQRLAALELNRYPVPSY 76 Query: 63 EPLKLAIARRHAADGISA-REVFVGNGSDEVLAHAFHALLQHGKPILFPDITYSFYPTYA 121 LK AI + G+ A +V +GNGSDE++ A Q G+ IL P+ + Y A Sbjct: 77 TALKAAICK---GLGVPAGYDVLLGNGSDELITLLSVACAQPGRTILAPEPGFVMYGVSA 133 Query: 122 GLYQIEYRAVPLTEDFTLRSEDYLGHGEAIGGII--FPNPNAPTGCLLGLEDVERILQ-G 178 + +EY VPL D +L L EA +I PN PTG L + DV RI++ Sbjct: 134 KMAGLEYVGVPLCADLSLDLPAMLAAMEAHKPVITWLGYPNNPTGTLYEMADVLRIVEAA 193 Query: 179 NPQRVVVVDEAYIDFGGQSAIPLVQRYPNLLVVQTFSKSRALAGMRVGFAIGHADLIDAL 238 P +VVVDEAY F + +P + ++ NL++++T SK LAG+R+G+ L+ L Sbjct: 194 APYGLVVVDEAYQPFAASTLMPALPQHNNLVLMRTVSK-LGLAGIRLGYLSAAPALLREL 252 Query: 239 ERVKNSFNSYPLDRPAIAGATAAIEDEDYFQQTCGMVIASRTALVAQLEGL-GFEVLPSA 297 ++V+ +N L A A +E D Q + +R+AL A+L L G +V PSA Sbjct: 253 DKVRPPYNVNVLTE---AAALFMLEHLDVLQAQAARLRQARSALAAELAALDGVQVFPSA 309 Query: 298 ANFVFARHPRHDAAELAASLRGDGIIVRHFKSERI--QQFLRITIGTDADCATLVDALRR 355 ANF+ R P DA ++ ASL ++V++ + Q LRIT+ +D + A + AL+ Sbjct: 310 ANFLLIRVP--DADKVCASLLAHRVLVKNAGRMHVLLQNCLRITVSSDKENAMFLAALKT 367 Query: 356 HL 357 L Sbjct: 368 AL 369 >gi|300311875|ref|YP_003775967.1| aspartate/tyrosine/aromatic aminotransferase [Herbaspirillum seropedicae SmR1] Length = 431 Score = 76.6 bits (187), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 82/259 (31%), Positives = 118/259 (45%), Gaps = 19/259 (7%) Query: 65 LKLAIAR----RHAADGISAREVFVGNGSDEVLAHAFHALLQHGKPILFPDITYSFYPTY 120 L+ AIA R+ D E V GS E LAH A L G +L P+ +Y + Sbjct: 110 LRRAIAHWYRSRYEVDFDPDSEAIVTIGSKEGLAHLMLATLDKGDTVLVPNPSYPIHIYG 169 Query: 121 AGLYQIEYRAVPLTEDFTLRSEDYLGHGEAI---GGIIFPNPNAPTGCLLGLEDVERI-- 175 A + R+V ++ E E+ +I P+ PT + LE ER+ Sbjct: 170 AVIAGANIRSVRMSPGVDFFDELERAVRESYPKPKMMILGFPSNPTAQCVELEFFERVVK 229 Query: 176 LQGNPQRVVVVDEAYID--FGGQSAIPLVQRYPNLLVVQ----TFSKSRALAGMRVGFAI 229 L Q +VV D AY D F G A P + + P V T SKS +AG R+GF + Sbjct: 230 LAREHQILVVHDLAYADITFDGWKA-PSIMQVPGAREVAVEFFTLSKSYNMAGWRIGFMV 288 Query: 230 GHADLIDALERVKNSFNSYPLDRPAIAGATAAIE-DEDYFQQTCGMVIASRTALVAQLEG 288 G+A L+ AL R+K S++ Y P A AA+E D+ ++ R LV L Sbjct: 289 GNARLVAALARIK-SYHDYGSFTPVQVAAIAALEGDQSCVEEIRANYERRRNVLVKGLHE 347 Query: 289 LGFEV-LPSAANFVFARHP 306 G+ V +P A+ +++AR P Sbjct: 348 AGWMVDVPKASMYIWARIP 366 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.138 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,223,078 Number of extensions: 54887 Number of successful extensions: 190 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 188 Number of HSP's successfully gapped: 3 Length of query: 362 Length of database: 1,619,870 Length adjustment: 86 Effective length of query: 276 Effective length of database: 1,212,660 Effective search space: 334694160 Effective search space used: 334694160 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)