BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4585.p
         (402 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313981|ref|YP_003778073.1| major facilitator superfamily p...   542   e-155

>gi|300313981|ref|YP_003778073.1| major facilitator superfamily
           permease [Herbaspirillum seropedicae SmR1]
          Length = 402

 Score =  542 bits (1396), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 347/401 (86%), Positives = 367/401 (91%)

Query: 1   MTSTAAHVPSPFIRRHPILTALALSLGTAVALGLARFSYALLLAPMRADLGWPYLVAGGM 60
           M + AA  PSPFI +HPILTALALSLGTAVALG+ARFSYALLLAPMRADLGWPYLVAGGM
Sbjct: 1   MPTDAARPPSPFILQHPILTALALSLGTAVALGVARFSYALLLAPMRADLGWPYLVAGGM 60

Query: 61  NTGNALGYLLGALSTPLLMRRFQAHRVLIAGAFGTALLSFLPALTTDTLWQLLLRIVTGV 120
           NTGNALGYLLGAL+TPLLMRRF AHRVLIAGAF TALLSFLPALTTDTL QLLLR+VTGV
Sbjct: 61  NTGNALGYLLGALATPLLMRRFLAHRVLIAGAFATALLSFLPALTTDTLLQLLLRVVTGV 120

Query: 121 TSALIFVSGGLLVSRLAALHAQRAGLLLGLYYGGTGIGIVAASLLVPPVMQAAVAQGAPH 180
           +SALIFVSGGLLVSRLAA+H  RAGLLLGLYYGGTG+GIVAASLLVPPVM AA+A GA H
Sbjct: 121 SSALIFVSGGLLVSRLAAMHGHRAGLLLGLYYGGTGLGIVAASLLVPPVMAAALAHGAAH 180

Query: 181 PWQWAWVLLGSLALVASVCMALPARLMPTAPAQAKGARHWRPRSLGFGLVGYLFFGLGYI 240
           PWQWAW+LLG+LAL AS+ MA PARLMPT  A  +G   W+ RSL FGL+GYLFFGLGYI
Sbjct: 181 PWQWAWLLLGTLALAASLVMAGPARLMPTTAAHVQGNGRWQARSLLFGLIGYLFFGLGYI 240

Query: 241 GYMTFVIALLKEEGMSASRITLFFALLGAATFASSRIWAPMLDRFRGGQSLAILNGLLCL 300
           GYMTFVIALLKEEGM A RITLFFALLGAATFASSRIWA MLDRFRGGQSLAILNGLL L
Sbjct: 241 GYMTFVIALLKEEGMPAERITLFFALLGAATFASSRIWARMLDRFRGGQSLAILNGLLAL 300

Query: 301 ATLLPALTAEPLAVLASGLLFGGCFLSAVASTTAMVRHNLPPADWPAGISAFTIIFAVGQ 360
           ATLLPALTAEP+AV ASGLLFGGCFLSAVASTTAMVRHNLPP  WPAGISAFTIIFAVGQ
Sbjct: 301 ATLLPALTAEPVAVFASGLLFGGCFLSAVASTTAMVRHNLPPHHWPAGISAFTIIFAVGQ 360

Query: 361 IIGPSIVGWIADGSGGLQRGLVFSALMLLAGSMVAWRQRPL 401
           IIGP+IVGWIADG+GGLQRGL FSALMLLAG++ AWRQRPL
Sbjct: 361 IIGPTIVGWIADGAGGLQRGLSFSALMLLAGALTAWRQRPL 401


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.327    0.140    0.436 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,072,397
Number of extensions: 40688
Number of successful extensions: 292
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 293
Number of HSP's successfully gapped: 3
Length of query: 402
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 315
Effective length of database: 1,207,925
Effective search space: 380496375
Effective search space used: 380496375
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 132 (55.5 bits)