BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4583.p
         (386 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313979|ref|YP_003778071.1| major facilitator superfamily p...   561   e-161
gi|300310361|ref|YP_003774453.1| major facilitator superfamily p...   113   2e-26

>gi|300313979|ref|YP_003778071.1| major facilitator superfamily
           permease [Herbaspirillum seropedicae SmR1]
          Length = 400

 Score =  561 bits (1446), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 334/386 (86%), Positives = 352/386 (91%), Gaps = 1/386 (0%)

Query: 1   MTTKPSISRSPSPLRLIWRKFAIPWFFLLLGVVFATWAARIPAIRDHLQLDAATLALVLL 60
           MTTK  I   P   +  WRK AIP+ FLLLGVVF+TWAARIPAIRD LQLDAATLALVLL
Sbjct: 16  MTTKHCIPALPQNHQ-AWRKIAIPFLFLLLGVVFSTWAARIPAIRDQLQLDAATLALVLL 74

Query: 61  CGGIGAVGSFPLAAWITGHYGARHSSLYAGLALLVSLPLLGLAPNLWTLMLVCTVYGAAS 120
           CGGIGAVGSFPLAAWITGHYGARHSSLYAGL LL+SLPLL LAP LWTLM VCT+YGAAS
Sbjct: 75  CGGIGAVGSFPLAAWITGHYGARHSSLYAGLVLLLSLPLLALAPGLWTLMAVCTLYGAAS 134

Query: 121 SCFDVAINALGAQAERDAGRPIMSMLHGWFCVGTFSGALTASAVAGMGIAPIWHFLLVAA 180
           SCFDVAINALGAQAER+AGRPIMSMLHGWFCVGTFSGAL ASAVAG+G+AP+WHFLL AA
Sbjct: 135 SCFDVAINALGAQAEREAGRPIMSMLHGWFCVGTFSGALVASAVAGLGVAPLWHFLLAAA 194

Query: 181 LFLYPLYAGYGALPDDRPAHDPERKLFALPHGHLVVLGVIAFCGAIVEGSVADWSGIYMK 240
           L  +PLYAG  ALPDDRP +DP+R+LFALPHGHLVVLGVIAFCGAIVEGSVADWSGIYMK
Sbjct: 195 LLAWPLYAGCQALPDDRPQYDPQRQLFALPHGHLVVLGVIAFCGAIVEGSVADWSGIYMK 254

Query: 241 DHIGASDGTTPLAYAAFAGMMLIMRMVGDGLKARYDARRVVWIGTLVASAGMALAVAAPG 300
           DHIGASDG TPLAYAAFAGMML+MRMVGDGLKARYDARRVV IGTLVA+ GMALAV A G
Sbjct: 255 DHIGASDGATPLAYAAFAGMMLVMRMVGDGLKARYDARRVVSIGTLVATGGMALAVTAQG 314

Query: 301 MVWAILGFAIAGTGVAAVFPFVFSAAGRHGSSALAAVATLGYSGSLIGPPLFGFLAHGWG 360
           M  AILGFAIAG GVAAVFPFVFSAAGRHGS+ALAAVATLGYSGSLIGPP+FGFLAHGWG
Sbjct: 315 MTPAILGFAIAGAGVAAVFPFVFSAAGRHGSTALAAVATLGYSGSLIGPPVFGFLAHGWG 374

Query: 361 LQAALALLGVLCLAMSGSSRRAQWLQ 386
           LQAALALLG LCLAM+ SSRRAQWLQ
Sbjct: 375 LQAALALLGALCLAMALSSRRAQWLQ 400


>gi|300310361|ref|YP_003774453.1| major facilitator superfamily
           permease [Herbaspirillum seropedicae SmR1]
          Length = 390

 Score =  113 bits (283), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 119/356 (33%), Positives = 179/356 (50%), Gaps = 23/356 (6%)

Query: 27  FLLLGVVFATWAARIPAIRDHLQLDAATLALVLLCGGIGAVGSFPLAAWITGHYGARHSS 86
           F + G  FATW   IP++++   L  A L+L +L    GA+ +   +       G+  + 
Sbjct: 27  FFVNGATFATWGVLIPSVKERFALSDAVLSLAMLAVAGGALLTMGQSGKWIARVGSARAL 86

Query: 87  LYAGLALLVSLPLLGLAPNLWTLMLVCTVYGAASSCFDVAINALGAQAERDAGRPIMSML 146
              G+    +L L+ LAP  W L+L+  V+G+A + FDVA++   A  E    RPIMS L
Sbjct: 87  RQVGILYAATLLLIPLAPQFWMLVLLLLVFGSAMAAFDVAMSVQAALVEGQRTRPIMSTL 146

Query: 147 HGWFCVGTFSGALTASAVAGMGIAPIWHFLLVAALFL-YPLYAGYGALPDDRPAHDPERK 205
           H  F +G  +GA   +     G++P+ H  LV  + L   L  G  ALPD+   HD    
Sbjct: 147 HAMFSIGGIAGAALGAVP---GLSPLAHAALVGVVTLAVSLSIGPFALPDE--VHDSA-- 199

Query: 206 LFALPHG-------HLVVLGVIAFCGAIVEGSVADWSGIYMKDHIGASDGTTPLAYAAFA 258
             A PHG        ++VLG IAF   + EG + DW+ +YM+D   +       +YAAF+
Sbjct: 200 --ATPHGADKRARRMVLVLGGIAFLALMCEGGMYDWAAVYMRDVAQSPMAWVSYSYAAFS 257

Query: 259 GMMLIMRMVGDGLKARYDARRVVWIGTLVASAGMALAVAAPGMVWAILGFAIAGTGVAAV 318
             M   R+ GD ++AR    R +       +AG+ALA A P  +  + G  ++G G+A +
Sbjct: 258 TGMAAGRLTGDRIRARIGGLRTLAWSGAAGAAGIALAAAWPSPLATLGGLLLSGLGIANL 317

Query: 319 FPFVFSAAGR----HGSSALAAVATLGYSGSLIGPPLFGFLAHGWGLQAALALLGV 370
            P  F AA R      + ++AAVA   Y G L+GP   G +A   GL+  L+ +GV
Sbjct: 318 MPIFFLAAARVPGMAAAESIAAVARFAYVGMLLGPVFIGGVAEHLGLR--LSFVGV 371


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.327    0.140    0.453 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,101,115
Number of extensions: 45203
Number of successful extensions: 287
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 283
Number of HSP's successfully gapped: 3
Length of query: 386
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 299
Effective length of database: 1,207,925
Effective search space: 361169575
Effective search space used: 361169575
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 131 (55.1 bits)