BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4578.p (2960 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312548|ref|YP_003776640.1| filamentous hemagglutinin outer... 716 0.0 gi|300310626|ref|YP_003774718.1| filamentous hemagglutinin prote... 542 e-154 >gi|300312548|ref|YP_003776640.1| filamentous hemagglutinin outer membrane protein [Herbaspirillum seropedicae SmR1] Length = 2685 Score = 716 bits (1849), Expect = 0.0, Method: Compositional matrix adjust. Identities = 524/1318 (39%), Positives = 743/1318 (56%), Gaps = 132/1318 (10%) Query: 1400 GTAQRTFVKSHSFKADDRRYESAPYASQTIETQFQLEVTPTHGTGST-----RDAISRAA 1454 GT Q V R + +A A+ + + ++T T G+G + DA +R Sbjct: 962 GTTQGAIVGKQGVNIMARNFSNADIAAGS-AANIRSDLTLTTGSGQSVGSVLNDASARPG 1020 Query: 1455 ITAPTQPLPATGRTNDLRAPAVDVSLPINALYQVNNSSPTAPLVQTDARFIGNRNWLSSD 1514 TAP P+P R N + PA + L++T +F R WLSSD Sbjct: 1021 ATAPDAPVPV--RPNPMFVPATSGNY----------------LLETRTQFTDRRTWLSSD 1062 Query: 1515 FLIQRIREQSGPAPQVQRFADGFYEQQLIQRQIQEATGQRYLKGFNSNEAQYLALMQAGL 1574 +L+ + P+ +R DGFYEQ++++ Q+ + TG R FN +++QY L+ + Sbjct: 1063 YLLTALNVD--PSTTQKRLGDGFYEQRMVREQMAQLTG-RPSGSFN-DDSQYQKLLNNAV 1118 Query: 1575 QQAQAQRYALGIALSEAQIAQLKTDIVWLVKQTVTLADGRTQEVLVPQVYL-HPSNIQVS 1633 AQ+ G+AL+ Q++ L +DIVWL Q V L DGRT+EVLVP++YL H + Sbjct: 1119 SVAQSWNLRPGVALTPDQVSHLTSDIVWLETQKVVLPDGRTEEVLVPKLYLAHIDKDALK 1178 Query: 1634 GQQTLIAGNDLALQTAQDILNRGGTIAARSGVSLRADNLRNLGGRIVGGNVDIAAASDID 1693 L++G+++ +Q A++I N+GG I R+ + GR V + A++DI Sbjct: 1179 NSGALVSGDNITIQ-AENISNKGGFIDGRASGT----------GRTV-----LVASNDIA 1222 Query: 1694 NAGGSIDADQQLILRAGRDI---ALTSTSVDTANATTVGRNI---NQVASVSGKDVVIAA 1747 N GG I D+ +++ AGR++ LT+T N T G NQ + + K++ I A Sbjct: 1223 NLGGGISGDE-IVISAGRNVRNETLTTTQTYN-NGQTSGSYTSLSNQGSIAADKNLTITA 1280 Query: 1748 GRDFTANAAVIA-------ARGDVSILAARDVNFGAVTEYFRQEIRWANDRGGSNWVRTL 1800 G D T A +A A G +S+ A RD+N G V + ++ G + V ++ Sbjct: 1281 GADITNLGATVASGRSGDAATGKLSMSAGRDINLGTVKTGSTYDANFSGYFGHAQSVSSV 1340 Query: 1801 -----TGPNL--------------VDRGNGAYGTTEVGVNRAVVTGS------------- 1828 G +L V G G + RAV G+ Sbjct: 1341 GSTVNAGGDLTMVAQRDLSLTAAQVAIGTNGSGNGSLMAGRAVTIGAALDRAESTIGRAA 1400 Query: 1829 -------QEVATQVSGSNI------RIQAG----QDVITQGTQIVADGALQAQAGRDIQI 1871 + + V GSNI I+AG DV + I A AL+ A DI + Sbjct: 1401 SRSYSRADDESVAVRGSNIDAAGGISIKAGLMEKADVKVAASSITAGKALEVAATGDINV 1460 Query: 1872 GTANASGSARDQVQRSSGGILSAKTVRTDDASSFSRQMGSTLSGNAVLVRAGQDVKVTGS 1931 + + S + + +S G+LS+ T + +++ +GSTLSG+ +++AG+D+ + GS Sbjct: 1461 VSEESFQSHSEYAKSTSRGLLSSTTRTSYGKRAYTNAVGSTLSGDTTVLQAGKDMSIVGS 1520 Query: 1932 DVVSTQGTAVVAGRDVNIASAIDS-STRRSFRQERASGVMGAGLGVTVGSRVQSRDVDGH 1990 +VVS+ GT++VA ++ +ASA D + ++ + + G GLG T+G+R Sbjct: 1521 NVVSSAGTSLVAANNITVASASDKVESAEGSNKKSSGLLSGGGLGFTIGTRELDNKNTTV 1580 Query: 1991 AQTAAASTVGSVEGNVTIVAGNRYTQVGSDVLAPKGDIDIAARSVEIRAAEQASRTETED 2050 TA +S VGS++GNV+I AGN YTQ GS+VLAPKGDID+ A+ + I AA + R+ + Sbjct: 1581 NSTAVSSNVGSIDGNVSIKAGNAYTQSGSNVLAPKGDIDVVAKQISILAAAETERSTQDM 1640 Query: 2051 KFKQSGLTVAVTSPVLSAIQTVGQMAEAASKTKDRRMQALAGATAGLSVSNAIDAVIAGQ 2110 FKQSGLT+ +TSPVLSAIQT QMA+AA T RMQ LA A G + NA+DAV GQ Sbjct: 1641 VFKQSGLTIQITSPVLSAIQTAQQMAQAAKSTSGGRMQLLAAANIGFAGKNAVDAVRTGQ 1700 Query: 2111 GQTIDGKAN-QIVTGPADP-------VTGKAPTRDANAAEKVGGINLAFSLGASSSQSRS 2162 G +DGK N Q+ T D K TRDA AA+K GGINLA S+GAS S++ S Sbjct: 1701 GFAVDGKDNPQVRTNALDENGDLKLGADKKPETRDATAADKAGGINLAISVGASKSENHS 1760 Query: 2163 EQTSNTVRGSTVSAGGSVNISAQGGGADSNIVIQGSDIKAGVNATLKAANEVRLISAQET 2222 + +++T RGST++AGG+++++AQGGGADSN+++QGSDI++G N LKA NEVRL++AQ T Sbjct: 1761 QSSASTARGSTLNAGGNISLTAQGGGADSNVIVQGSDIRSGANTLLKADNEVRLLAAQST 1820 Query: 2223 SEQHSRNSGASGSVGVSIGTDGLLFTASASGSRGKGEGAEVTQVNTHVDAGNKPTIVSGT 2282 +EQ S N SGSVG+SIGTDG L A SGSRG+G+G++V QVNTHVDAGNK TI SGT Sbjct: 1821 TEQSSSNKAMSGSVGISIGTDGFLVNAGLSGSRGRGDGSDVAQVNTHVDAGNKLTIASGT 1880 Query: 2283 DTTISGAVVRGKQVEMEVGTSGKGNLNIASQQDSSTFQSRQQSLGGSVSVGTGKMGGSVN 2342 DTTI GAV GKQV ++VGTSG GNLNI S QD+ST++SRQQS G S+S G G+M GS+N Sbjct: 1881 DTTIKGAVASGKQVVIDVGTSGSGNLNIESLQDTSTYKSRQQSAGVSISAGMGRMSGSLN 1940 Query: 2343 YSQSNINSNYASVMEQSGIKAGDGGFQINVRGNTDLKGAVIASSDKAVAANKNSLTTQTL 2402 ++S+++ NYASV EQSGIKAGD GFQINV GNTDLKGA IAS+DKA A KNSLTT+TL Sbjct: 1941 LARSSVDGNYASVNEQSGIKAGDDGFQINVAGNTDLKGAKIASTDKAAADGKNSLTTETL 2000 Query: 2403 TQSDIQNIAQYDAQSVGIGVGYN-TGKDGGLSATPPMVVGANGSASSTTRSAISGGVITI 2461 TQSDI+N + + A+S +G+G N G GL+ + +GS SSTTRS IS I I Sbjct: 2001 TQSDIKNRSDFKAESQSVGMGTNLAGSVLGLAGSALGRGNVSGSDSSTTRSGISQADIKI 2060 Query: 2462 TDDKKQQELTGKTAEQAIASVNREVSSSKEGSNALKPIFNKEEIENKTAIAGAFTRELGS 2521 TDD QQ TGKTAEQ IAS+N +VSS ++ S + +N +E++ TR G Sbjct: 2061 TDDAAQQAKTGKTAEQTIASINADVSSERDTSGKIAKTWNGQELQADVEAQAEITRAFGQ 2120 Query: 2522 FLNNRAKEADEARRKLDDAIAEERGNPVEQRDETRLRRLTEQYLDAEKWSSAGTYRQYAT 2581 + A E++ K + + N + D+T+ L + A++W G ++ Sbjct: 2121 QVAQLAGAYAESKEK---ELRQAASNAAQNGDQTQALLLGAE---ADQWKDGGENKRALK 2174 Query: 2582 AIVGAVTGNLNA-STSQFIQAAAVNYLQGLGAEQVKRIADSL--ESEPARVALQGVLG 2636 AI V G L S Q + A+ YL A+ + R E++ A+V +LG Sbjct: 2175 AITTLVIGGLGGQSAGQLLANASAPYL----ADAIGRYFSQPGNENKSAQVLSHAILG 2228 Score = 317 bits (811), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 236/620 (38%), Positives = 338/620 (54%), Gaps = 79/620 (12%) Query: 7 RCSALRLSIALA----LAWHSVVHAQILIDRNAPPTQQASVLSSGNGVPVVNIQQPNARG 62 R S + L++ LA + +AQI+ D NAP QQ V+++ NG+P VNIQ P+A G Sbjct: 48 RLSWIGLAVLLATGALVTTMPRAYAQIIADPNAPRAQQPVVVNTANGIPQVNIQTPSAAG 107 Query: 63 LSVNRYRRFDVDARGVILNNAGSASKTGLAGYVAGNPRLAGGGARVIVNQINATDPSYLR 122 +S N Y +FDV+ G ILNN+ S +T L G+V NP LA G ARVI+N++N+++PS LR Sbjct: 108 VSRNTYSQFDVNRAGAILNNSRSDVQTQLGGWVQRNPNLANGTARVILNEVNSSNPSMLR 167 Query: 123 GFIEVAGHQAQVIIANPAGITCAGCGFINAPRVTLTTGTPIIHQGSLESYRVGGGVLSIE 182 GF+EVAG +AQVIIANP+G+TC GCGFINA R TLTTGTPII+ GSL+ Y V GGV+SI+ Sbjct: 168 GFVEVAGDRAQVIIANPSGVTCDGCGFINASRSTLTTGTPIINNGSLDGYLVRGGVVSIK 227 Query: 183 GDGMQAGSADYADLIARAVRINAGLWANRVKVSTGLNAVSADHEQVVPGVAPLDATPLRA 242 G+G+ + + DLIARA +INAG+W+ +KV+ G N V+AD+ V V+ A P Sbjct: 228 GNGLNDSQSSFTDLIARAAKINAGIWSKELKVTVGTNQVNADNTTVT-AVSADPAKPQFG 286 Query: 243 IDVAHLGGMYAGHIYLMATEQGVGAHN-GGKLVADTELIVTAAGRLENTGTLAARGH--- 298 IDVA LGGMYA I L+ TE GVG N G A EL +TAAGR+EN+G+LAA Sbjct: 287 IDVAQLGGMYANKIVLVGTESGVGVRNAGAIGAAAGELTLTAAGRIENSGSLAATASLGV 346 Query: 299 ---------------------TRLEVAGALGNSGSIGGTTGLTVNAAALDNSGDLLTPAA 337 +L+ G + NS +I +G+T+ AA+L NSG + Sbjct: 347 RATGQGGDIVNSGSVASSAAAVKLQADGGINNSNTISAQSGVTLTAASLQNSGAISAATG 406 Query: 338 -LEIGLKQGLINGGRIGSNALLTVQAATLENRQDLYSSRSSVQLKIGERLVNRGNIEA-- 394 +E+ + N G+ VQAA D+ S + Q + N GNIEA Sbjct: 407 NVEVDTHGAVNNSGK--------VQAA-----GDISISATQPQGNAAADISNTGNIEAAG 453 Query: 395 RQTVTANATALDNQGRFISEDALAVITRTHIRNTGTLG--SQGAVDLRAASVDN-QGLIS 451 + +TA+ L N G ++ A + +RN G++G S A L+ V G +S Sbjct: 454 QLGLTADGM-LSNDGSITAQSIRAGV--QGLRNNGSIGTRSNAAFTLQQGLVQGANGRLS 510 Query: 452 AGKAMTISLSGQLNNDKTLQASGDITIDAAAVDNK-GSVVTPGSLAMQIQGNVLNTGKIG 510 A + +++ G +N +QA+ +T+ AA + N+ G+ + + + + N G+I Sbjct: 511 AVSDLNLTMQGDYDNAGRVQAN-TLTLSAANIGNRSGAALQAADITLTALNRLDNAGEIS 569 Query: 511 AAGAIDFRAAALENRNALYSIRSTIDVQTSGSTLNSGTMEAAQALRLNASALHNSGK--- 567 A ++ T+ S LNS T+ + L +NA L N+G Sbjct: 570 ANRQLNI---------------------TADSILNSATI-LGKDLVVNARTLENTGANAL 607 Query: 568 LTAVAAMTLALKQQLNNTGE 587 L A M+L L + L N G+ Sbjct: 608 LGAGNGMSLWLTEMLANRGK 627 >gi|300310626|ref|YP_003774718.1| filamentous hemagglutinin protein [Herbaspirillum seropedicae SmR1] Length = 2658 Score = 542 bits (1397), Expect = e-154, Method: Compositional matrix adjust. Identities = 621/2091 (29%), Positives = 949/2091 (45%), Gaps = 361/2091 (17%) Query: 667 GVVVAQQDLRIASGELTNAEGRIAAKGKLNIASGEIDNDQGLLQARKTVEIDTHGQALRN 726 G A D+ + S T+ +G + A + G I+N G L A+ ++I T Q LR+ Sbjct: 303 GKTSASDDIVLKSAVGTSNDGVLYAGRNAQLQGGVIEN-AGTLSAQGNLDI-TAAQ-LRS 359 Query: 727 THSSKDQGLRAGGGLRIESGPFINRSGVVVVVGEANLKVSRLDNQGGDMVTAGALNLDAD 786 T + L AG ++ + ++G + V ++ + ++ G D+ G +D Sbjct: 360 TGT-----LAAG----VDQAGNVAQAGNLTVTASGDVLATGVNRAGADLQLVGG-KIDLS 409 Query: 787 SLDNSTG-KLQAQSTMRIDIAGGTLDNHQGLIRADSDLVIQARTLRNDDTQDKEQGIEGR 845 +S G KL AQ++ + + G T++ G DL + T+ T D + Sbjct: 410 HSSSSAGRKLGAQASDALTLGGATVETLAG------DLELGGATI----TLDGAKLTSSA 459 Query: 846 DVTIRAT-DVNNNQGAIRTDRLLKIDSVGSVENRRGLLSS-KGKVGVSDSTPNRSLIIDN 903 D I A ++N G I + + + + SV+N G++S+ G GV S I N Sbjct: 460 DARINAVAGLSNRGGEITSAGAMNV-TAASVDNSAGMISAATGGAGVLSLRSAGS--ISN 516 Query: 904 DDGRIVAAEELDLRAAALIGKGLLLSHQDLRIDVVRDLEQRGQTAASANIDIR--TAGRF 961 GRI A L+L AA++ G+G ++++ D + + + L + +N D+R T+G Sbjct: 517 GQGRIAAGAALNLAAASIQGQGSVIANGDATLSL-QSLNNEAGSLIQSNRDLRITTSGAT 575 Query: 962 SHYGTTAAGASLSISAKGVENHAGAALLGKEVLLTATEASTLLNRGLIDGVTTRLQAGTL 1021 + G A +L+++A ++N AG + L A + N G I G T + L Sbjct: 576 GNQGALKAIGALNLTASQIDNAAGGDISAAATTLQALNGD-INNAGKIGGNTIATTSNAL 634 Query: 1022 DNLGPGRLYGDRLAIRADVLHNAPEIVEGVLRAPVIAARERLDIGAGEIHNSEQALLYSV 1081 +N G + G + I AD L+N+ V A + N + AL+YS+ Sbjct: 635 NN--QGSMIGGDVTINADRLNNSGAAAAIAATNSVQAFVRS------ALTNQDNALIYSL 686 Query: 1082 GDIAIGGTLGQ----DYRAGGRARAVNNTSATINADGRLRIAADTINNHNAHFETSEENK 1137 G + I Q DY R + N+SATI A G L ++ADT Sbjct: 687 GKLVIAADATQSAAGDYLH--RTGTLTNSSATIEAGGDLAVSADT--------------- 729 Query: 1138 PGRRIINYR--LVGSSDFISADKARLISIGNSQIIAPENWRAMGD----EDNFRLLLP-S 1190 I+N R LV + D + S WR+ G D+ L+ + Sbjct: 730 ----IVNKRSTLVIARDIFDGTE--------SWQKYNYYWRSWGSGMSGPDSAGLMAAVT 777 Query: 1191 AEYPFD-------RYGPPVDYNREVLRRDYSSGGIGVVPAYLKPLPESSTETAILPALPE 1243 PF+ RYG +L+ D SS Sbjct: 778 RTLPFNDASAFGSRYG-------SILQLDLSSN-------------------------RA 805 Query: 1244 LFVYLPSDRIWDVFGIARPTAEVPREPDKPAG--CSDADNCVSGDYQQ---RRAAWKAVR 1298 L + S+++W + + A+ + G C + C YQQ R V+ Sbjct: 806 LVQFQGSNQLWVSYKAIKQNADGSYDMTFYEGKNCDGSTLC---PYQQMVWREYTGSRVQ 862 Query: 1299 D----------AQLPAYEKLNEAIRDFNISLRERLFDQWIIHDGTEQIRRTIVTRSAPGM 1348 D A+L E+ DF RER ++ HD I S Sbjct: 863 DQFDPSRYTSPAELKGIGTNGESAYDF----RERSYNGSNYHD-------AITAMSDAAK 911 Query: 1349 ITSGGGMDLVAGVVNNYASQFIAGGALVADRINGT-----TINNIG-PLGRQTVTSTGTA 1402 + + G + + + N AS IAGGAL + NG+ +NNIG + R T+ GTA Sbjct: 912 LNASGRITINTAALTNDASDIIAGGALTINGANGSAASGGVVNNIGYSINR---TAIGTA 968 Query: 1403 QRTF---VKSHSFKADDRRYESAPYASQTIETQFQLEVTPTHGTGSTRDAISRAAITAPT 1459 + V H++ + +A QTI+ Q + ++ + A T Sbjct: 969 VDHYDRHVGHHTYTTLNLTEVTAL---QTIDANIQ----SNQAVSISAQNLNNTTVGAAT 1021 Query: 1460 QPLPATGRTNDLRAPAVDVSLPINALYQVNNSSPTAPLVQTDARFIGNRNWLSSDFLIQR 1519 P A G + +++LP L+ V LV+TD RF + +L SD+++ R Sbjct: 1022 VPTRAGGVGH------ANITLPAGGLFTVRPEPGQRYLVETDRRFTDYKTFLGSDYMLGR 1075 Query: 1520 IREQSGPAPQVQRFADGFYEQQLIQRQIQEATGQRYLKGFNSNEAQYLALMQAGLQQAQA 1579 + P+ +R DGFYEQ+LI QI + TG+++L G+ + EAQY ALM +G+ A + Sbjct: 1076 LTMD--PSMTQKRLGDGFYEQKLINDQIAQLTGKKFLDGYTNAEAQYKALMDSGVASAAS 1133 Query: 1580 QRYALGIALSEAQIAQLKTDIVWLVKQTVTLADGRTQEVLVPQVYL-HPSNIQVSGQQTL 1638 + GIALS Q+A L +DIVW+V VTLADG Q LVP VYL H + + L Sbjct: 1134 FKLTPGIALSADQMAALTSDIVWMVDTEVTLADGSRQHALVPTVYLAHGGSATLQASGAL 1193 Query: 1639 IAGNDLALQTAQDILNRGGTIAARSGVSLRADNLRNLGGRIVGGNVDI------------ 1686 I G D+ L A D +N G + A +++ A ++ N GG + G VD+ Sbjct: 1194 IGGRDVTL--AADTVNNSGIVRAEDKLAVAARDINNTGGELRGDKVDVLATETLNIGTDF 1251 Query: 1687 ---------------AAASDIDNAGGSIDADQQLILRAGRDIAL-TSTSVDTANATTVG- 1729 AA+DI+ G I AD L L A ++ + +T+ T G Sbjct: 1252 QNYGRQGSVTGRQVSLAANDINIIGAKIKADDTLKLAAQNNLTIAAATAQHDVKLTWSGA 1311 Query: 1730 ----------RNINQVASV---------SGKDVVIAAGRDFTANAAVIAARGDVSILAAR 1770 RN A + +G D AAGR+ + I +G+ ++LA Sbjct: 1312 GEREENHGMMRNGGVTAQLQQALGSTIEAGGDASFAAGRNIAVRGSSIDVKGNAALLAGG 1371 Query: 1771 DVNFGAVTEYFRQEIRWANDRGGSNWV---RTLT--------GPNLVDRG-NGAYGTT-- 1816 V AV + +DR N V LT G ++V G NG+ T Sbjct: 1372 SVEVSAVKTATDSVVTGRSDRYDLNVVGHTENLTTSQIAAGKGLSIVASGQNGSGDITLA 1431 Query: 1817 ---------EVGVNRA----------------------VVTGSQEVATQVSGSNIRIQAG 1845 EV +N A + + ++ +GS I + G Sbjct: 1432 ASRLSSKEGEVTLNAAGDISIGAMQKNNDNRIDERGGKAWMKTHDSSSVAAGSLIEGEKG 1491 Query: 1846 QDVITQG----------TQIVADGALQAQAGRDIQIGTANASGSARDQVQRSSGGILSAK 1895 ++I G + I ++G + QA D+ + +S Q S G LS Sbjct: 1492 VNLIATGRSDAKVSVAGSDIYSNGTIAIQAKGDVTVAETRSSSDEWQQAHSESRGFLSRS 1551 Query: 1896 TVRTDDASSFSRQMGSTLSGNAVLVRAGQDVKVTGSDVVSTQGTAVVAGRDVNIASAIDS 1955 + D GSTLSGN V++ AG+++ V GS+VVST+ T++ A DV+I + + Sbjct: 1552 SSDRTDQVRQDMANGSTLSGNKVVIDAGRNIAVRGSEVVSTELTSLRAANDVSITTTQNF 1611 Query: 1956 STRRSFRQERASGVMGAGLGVTVGSRVQSRDVDGHAQTAAASTVGSVEGNVTIVAGNRYT 2015 + + ++++R SG+MGAG G+++GS+ Q + +G + T ASTVGSV GNV I+AGN + Sbjct: 1612 TEQSHYKEDRKSGLMGAGFGISIGSQGQMANGNGSSVTNNASTVGSVNGNVNIIAGNAFR 1671 Query: 2016 QVGSDVLAPKGDIDIAARSVEIRAAEQASRTETEDKFKQSGLTVAVTSPVLSAIQTVGQM 2075 Q+GS V+AP+GDI+I A+SV+I AA AS E+KFKQSGLT+A+ SPV+S +QT Q+ Sbjct: 1672 QIGSQVVAPQGDINILAKSVDIGAAYDASVYTQENKFKQSGLTLAINSPVISVLQTGQQL 1731 Query: 2076 AEAASKTKDRRMQALAGATAGLSVSNAIDAVIAGQGQTIDGKANQIVTGPADPVTGKAPT 2135 +A KT D+RMQALA AT NA DA A ++ P D Sbjct: 1732 IQAGQKTPDKRMQALAAATL---AKNAYDAGAA------------LIDKPTD-------- 1768 Query: 2136 RDANAAEKVGGINLAFSLGASSSQSRSEQTSNTVRGSTVSAGGSVNISAQGGGADSNIVI 2195 G+ + SLG+S S ++ Q S+ GSTV+AGG+VNI A GG S+I + Sbjct: 1769 --------TSGVKITLSLGSSQSSNKVTQASSQAVGSTVAAGGAVNIVAS-GGPRSDINV 1819 Query: 2196 QGSDIKAGVNATLKAANEVRLISAQETSEQHSRN--SGASGSVGVSIG--TDGLLFTASA 2251 GS I AG + +L A +E+ L++AQ QH N SGAS +G ++G +G A Sbjct: 1820 VGSAISAGGDVSLVADHEINLLAAQSAYSQHGNNNSSGASIGIGFAMGGSQNGFTLELGA 1879 Query: 2252 SGSRGKGEGAEVTQVNTHVDAGNKPTIVSGTDTTISGAVVRGKQVEMEVGTSGKGNLNIA 2311 + +RG +G ++ + + AGN+ +++SG DT + G+ V K V +G G+LNI Sbjct: 1880 NRARGNLDGDDLVNKASTISAGNQASLISGGDTNVRGSTVSAKTVAAAIG----GDLNIE 1935 Query: 2312 SQQDSSTFQSRQQSLGGSVSVGTGKM-----GGSVNYSQSNINSNYASVMEQSGIKAGDG 2366 S QD ST+ S+Q S G +S+ S + S S +Y SV+ Q+GIKAGDG Sbjct: 1936 SLQDKSTYGSKQSSAGVGLSLCIPPFCYGASSVSGSLSGSKAKGDYQSVVTQAGIKAGDG 1995 Query: 2367 GFQINVRGNTDLKGAVIASSDKAVAANKNSLTTQTLTQSDIQNIAQYDAQSVGIGVGYNT 2426 GF++ V GNTDLKGAVI+S+ KA+ KN L T TLT SDI N Y+A + G + Sbjct: 1996 GFRLVVAGNTDLKGAVISSTAKAIEDGKNFLQTGTLTYSDISNHDAYEASGYSVS-GSMS 2054 Query: 2427 GKDGGLSATP-----------------PMVVGANGSASSTTRSAISGGVITITDDKKQQE 2469 + G S P GS SS TRS ISGG + ITD++ Q+ Sbjct: 2055 SQLGDQSKAKTEADKAAANSRTGPGGSPGYSDTGGSQSSVTRSGISGGTVIITDEQGQKA 2114 Query: 2470 LTGKTAEQAIASVNREVSSSKEGSNALKPIFN----KEEIENKTAIAGAFTRELGSFLNN 2525 TG++AEQ +AS+NR+V SSK+ S AL ++ ++++E + I AF + + + + Sbjct: 2115 ATGQSAEQILASLNRDVDSSKDSSGALSKAWDGEALRQQVEAEAQIRQAFGQTVAKSIGD 2174 Query: 2526 RAKEADEARRKLDDAIAE-ERGNPVEQRDETRLRRLTEQYLDAEKWSSAGT 2575 AD R L +A + E+ EQ + R +A +W GT Sbjct: 2175 Y---ADTKERDLKNAAKQAEQDGDAEQAAKLR--------AEAARWGEDGT 2214 Score = 252 bits (644), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 220/650 (33%), Positives = 328/650 (50%), Gaps = 69/650 (10%) Query: 5 AGRCSALRLSIALALAWHSVV---HAQILIDRNAPPTQQASVLSSGNGVPVVNIQQPNAR 61 +GR LR ++A + VV + QI+ D NA ++ V ++ NG P+V I P+A Sbjct: 13 SGRHGVLRRAMAALMIMLCVVPPGYPQIVADPNAGAGKRPVVDNTANGRPLVQIATPSAA 72 Query: 62 GLSVNRYRRFDVDARGVILNNAGSASKTGLAGYVAGNPRLAGGGARVIVNQINATDPSYL 121 G+S N+Y +F+V G ILNNA T GYV NP L GG ARVI+N++ +T PS L Sbjct: 73 GVSHNQYSQFNVGPNGAILNNARDVVLTQQGGYVGANPNLQGGAARVILNEVTSTSPSQL 132 Query: 122 RGFIEVAGHQAQVIIANPAGITCAGCGFINAPRVTLTTGTPII-HQGSLESYRVGGGVLS 180 RG+ EVAG +A+VIIANP GI+C GCGFIN R LTTG P+ GSLE++RV G + Sbjct: 133 RGYTEVAGQRAEVIIANPNGISCDGCGFINTSRGVLTTGVPLFGGNGSLEAFRVSRGAIQ 192 Query: 181 IEGDGMQAGSADYADLIARAVRINAGLWANRVKVSTGLNAVSADHEQVVPGVAPLDATPL 240 I G+ + D DLIAR+V++N LW NR+ + TG N V+ + + +A P Sbjct: 193 IGSGGLNGANTDQLDLIARSVQVNGELWGNRLNLVTGANRVNY-GDLGLSVIAGEGNAPT 251 Query: 241 RAIDVAHLGGMYAGHIYLMATEQGVGAHNGGKLVADT-ELIVTAAGRLENTGTLAARGHT 299 +DVA +GGMYA I L+ TE GVG + G L A +++ G++ +G +A Sbjct: 252 IGVDVARMGGMYAQKIMLVGTENGVGVRSLGTLAAQAGSFTLSSQGQIALSGKTSASDDI 311 Query: 300 RLEVAGALGNSGSIGGTTGLTVNAAALDNSGDLLTPAALEIGLKQ---------GLINGG 350 L+ A N G + + ++N+G L L+I Q G+ G Sbjct: 312 VLKSAVGTSNDGVLYAGRNAQLQGGVIENAGTLSAQGNLDITAAQLRSTGTLAAGVDQAG 371 Query: 351 RIGSNALLTVQA-----ATLENRQ-----------DLYSSRSSVQLKIGERLVNRGNIEA 394 + LTV A AT NR DL S SS K+G + + + Sbjct: 372 NVAQAGNLTVTASGDVLATGVNRAGADLQLVGGKIDLSHSSSSAGRKLGAQASDALTLGG 431 Query: 395 RQTVTANATALDNQGRFISEDALAVITRTHIR---------NTGTLGSQGAVDLRAASVD 445 TV A L+ G I+ D + + R G + S GA+++ AASVD Sbjct: 432 -ATVETLAGDLELGGATITLDGAKLTSSADARINAVAGLSNRGGEITSAGAMNVTAASVD 490 Query: 446 NQ-GLISA--GKAMTISL--SGQLNNDK-TLQASGDITIDAAAVDNKGSVVTPGSLAMQI 499 N G+ISA G A +SL +G ++N + + A + + AA++ +GSV+ G + + Sbjct: 491 NSAGMISAATGGAGVLSLRSAGSISNGQGRIAAGAALNLAAASIQGQGSVIANGDATLSL 550 Query: 500 QGNVLNTGKIGAAGAIDFRAAALENRNALYSIRSTIDVQTSGSTLNSGTMEAAQALRLNA 559 Q +++ A +L N + + TSG+T N G ++A AL L A Sbjct: 551 Q-------------SLNNEAGSLIQSN------RDLRITTSGATGNQGALKAIGALNLTA 591 Query: 560 SALHNS--GKLTAVAAMTLALKQQLNNTGEIGANDALGLTASTLDNRGTL 607 S + N+ G ++A A AL +NN G+IG N + T++ L+N+G++ Sbjct: 592 SQIDNAAGGDISAAATTLQALNGDINNAGKIGGN-TIATTSNALNNQGSM 640 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.312 0.129 0.352 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 8,731,372 Number of extensions: 384023 Number of successful extensions: 1422 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 1269 Number of HSP's successfully gapped: 11 Length of query: 2960 Length of database: 1,619,870 Length adjustment: 103 Effective length of query: 2857 Effective length of database: 1,132,165 Effective search space: 3234595405 Effective search space used: 3234595405 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 140 (58.5 bits)