BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4576.p (1055 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312548|ref|YP_003776640.1| filamentous hemagglutinin outer... 483 e-137 gi|300310626|ref|YP_003774718.1| filamentous hemagglutinin prote... 466 e-132 >gi|300312548|ref|YP_003776640.1| filamentous hemagglutinin outer membrane protein [Herbaspirillum seropedicae SmR1] Length = 2685 Score = 483 bits (1244), Expect = e-137, Method: Compositional matrix adjust. Identities = 331/787 (42%), Positives = 489/787 (62%), Gaps = 58/787 (7%) Query: 5 ALQAQAGRDIQIGTANASGSARDQVQRSSSGILSAKTVRTDDASSFSRQLGSTLSGNAVL 64 AL+ A DI + + + S + + +S G+LS+ T + +++ +GSTLSG+ + Sbjct: 1449 ALEVAATGDINVVSEESFQSHSEYAKSTSRGLLSSTTRTSYGKRAYTNAVGSTLSGDTTV 1508 Query: 65 VRAGQDVKVTGSDVVSTQGTAVVAGRDVNIASAIDS-STRRSFRQETTSGVMGAGLGVTI 123 ++AG+D+ + GS+VVS+ GT++VA ++ +ASA D + ++++ + G GLG TI Sbjct: 1509 LQAGKDMSIVGSNVVSSAGTSLVAANNITVASASDKVESAEGSNKKSSGLLSGGGLGFTI 1568 Query: 124 GTREQSHDGKTQGQTAAASTIGSVEGNVTIVAGNRYTQVGSDVLAPKGDIDIAARSVEIR 183 GTRE + T TA +S +GS++GNV+I AGN YTQ GS+VLAPKGDID+ A+ + I Sbjct: 1569 GTRELDNKNTTVNSTAVSSNVGSIDGNVSIKAGNAYTQSGSNVLAPKGDIDVVAKQISIL 1628 Query: 184 AAEQASRTTTEDKFKQSGVTLAITSPVISAMQSVEQMADAASKTKSGRAQALAAATAGMS 243 AA + R+T + FKQSG+T+ ITSPV+SA+Q+ +QMA AA T GR Q LAAA G + Sbjct: 1629 AAAETERSTQDMVFKQSGLTIQITSPVLSAIQTAQQMAQAAKSTSGGRMQLLAAANIGFA 1688 Query: 244 VYSAAGEMQ--------------------------KAGSEGSPS------------IGIS 265 +A ++ K G++ P I ++ Sbjct: 1689 GKNAVDAVRTGQGFAVDGKDNPQVRTNALDENGDLKLGADKKPETRDATAADKAGGINLA 1748 Query: 266 ATIGSSQNGSRSEQNTVTQRGATVASGGNMSIRATGDGANSNITIAGSDINAKGNLALKA 325 ++G+S++ + S+ + T RG+T+ +GGN+S+ A G GA+SN+ + GSDI + N LKA Sbjct: 1749 ISVGASKSENHSQSSASTARGSTLNAGGNISLTAQGGGADSNVIVQGSDIRSGANTLLKA 1808 Query: 326 DNDINLIAAQNSDEQHSTRSSSSWGVGITAQIGSQSKLGITANAAGSRGKSDGKDVSNVM 385 DN++ L+AAQ++ EQ S+ + S VGI+ IG+ L + A +GSRG+ DG DV+ V Sbjct: 1809 DNEVRLLAAQSTTEQSSSNKAMSGSVGIS--IGTDGFL-VNAGLSGSRGRGDGSDVAQVN 1865 Query: 386 TQVRAGGQVNINSGRDTNLIGATVSGEQVVANVGR----DLNIASVQDTSTFKSRDQSVG 441 T V AG ++ I SG DT + GA SG+QVV +VG +LNI S+QDTST+KSR QS G Sbjct: 1866 THVDAGNKLTIASGTDTTIKGAVASGKQVVIDVGTSGSGNLNIESLQDTSTYKSRQQSAG 1925 Query: 442 GSATIGYG-SGASISASRSRVDADYASVGQQAGIMAGNGGFQINVKGNTDLKGAQIASTD 500 S + G G S++ +RS VD +YASV +Q+GI AG+ GFQINV GNTDLKGA+IASTD Sbjct: 1926 VSISAGMGRMSGSLNLARSSVDGNYASVNEQSGIKAGDDGFQINVAGNTDLKGAKIASTD 1985 Query: 501 QSVEQGRNSLTTGTLTSSDIQNRSQYSAESQSASVGTS-----GGKPGGGIGIGNASGSE 555 ++ G+NSLTT TLT SDI+NRS + AESQS +GT+ G G +G GN SGS+ Sbjct: 1986 KAAADGKNSLTTETLTQSDIKNRSDFKAESQSVGMGTNLAGSVLGLAGSALGRGNVSGSD 2045 Query: 556 TSVTRSGVSGAAVTITDAQAQQARTGQSSDQAVASLDASVRTGKDSSNSLSKSWDGNQLR 615 +S TRSG+S A + ITD AQQA+TG++++Q +AS++A V + +D+S ++K+W+G +L+ Sbjct: 2046 SSTTRSGISQADIKITDDAAQQAKTGKTAEQTIASINADVSSERDTSGKIAKTWNGQELQ 2105 Query: 616 EDVEAQAKITQAFGQQASTLIGNYAEEQQKKAADLRKQAADTSDPQQAKELNDQASALES 675 DVEAQA+IT+AFGQQ + L G YAE ++K+ AA D QA L +A Sbjct: 2106 ADVEAQAEITRAFGQQVAQLAGAYAESKEKELRQAASNAAQNGDQTQALLLGAEA----D 2161 Query: 676 KWGPDGKMRVLAHSIVGGLTGGLAG-AAGAAAGTLTAPNVASALDKAGVDP-DLAKALTG 733 +W G+ + +I + GGL G +AG +AP +A A+ + P + K+ Sbjct: 2162 QWKDGGENKRALKAITTLVIGGLGGQSAGQLLANASAPYLADAIGRYFSQPGNENKSAQV 2221 Query: 734 LSSALVG 740 LS A++G Sbjct: 2222 LSHAILG 2228 >gi|300310626|ref|YP_003774718.1| filamentous hemagglutinin protein [Herbaspirillum seropedicae SmR1] Length = 2658 Score = 466 bits (1198), Expect = e-132, Method: Compositional matrix adjust. Identities = 336/798 (42%), Positives = 481/798 (60%), Gaps = 45/798 (5%) Query: 2 AEGALQAQAGRDIQIGTANASGSARDQVQRSSSGILSAKT------VRTDDASSFSRQLG 55 + G + QA D+ + +S Q S G LS + VR D A+ G Sbjct: 1513 SNGTIAIQAKGDVTVAETRSSSDEWQQAHSESRGFLSRSSSDRTDQVRQDMAN------G 1566 Query: 56 STLSGNAVLVRAGQDVKVTGSDVVSTQGTAVVAGRDVNIASAIDSSTRRSFRQETTSGVM 115 STLSGN V++ AG+++ V GS+VVST+ T++ A DV+I + + + + ++++ SG+M Sbjct: 1567 STLSGNKVVIDAGRNIAVRGSEVVSTELTSLRAANDVSITTTQNFTEQSHYKEDRKSGLM 1626 Query: 116 GAGLGVTIGTREQSHDGKTQGQTAAASTIGSVEGNVTIVAGNRYTQVGSDVLAPKGDIDI 175 GAG G++IG++ Q +G T AST+GSV GNV I+AGN + Q+GS V+AP+GDI+I Sbjct: 1627 GAGFGISIGSQGQMANGNGSSVTNNASTVGSVNGNVNIIAGNAFRQIGSQVVAPQGDINI 1686 Query: 176 AARSVEIRAAEQASRTTTEDKFKQSGVTLAITSPVISAMQSVEQMADAASKTKSGRAQAL 235 A+SV+I AA AS T E+KFKQSG+TLAI SPVIS +Q+ +Q+ A KT R QAL Sbjct: 1687 LAKSVDIGAAYDASVYTQENKFKQSGLTLAINSPVISVLQTGQQLIQAGQKTPDKRMQAL 1746 Query: 236 AAATAGMSVYSAAGEMQKAGSEGSPSIGISATIGSSQNGSRSEQNTVTQRGATVASGGNM 295 AAAT + Y A + ++ S + I+ ++GSSQ+ ++ Q + G+TVA+GG + Sbjct: 1747 AAATLAKNAYDAGAALIDKPTDTS-GVKITLSLGSSQSSNKVTQASSQAVGSTVAAGGAV 1805 Query: 296 SIRATGDGANSNITIAGSDINAKGNLALKADNDINLIAAQNSDEQHSTRSSSSWGVGI-T 354 +I A+G G S+I + GS I+A G+++L AD++INL+AAQ++ QH +SS +GI Sbjct: 1806 NIVASG-GPRSDINVVGSAISAGGDVSLVADHEINLLAAQSAYSQHGNNNSSGASIGIGF 1864 Query: 355 AQIGSQSKLGITANAAGSRGKSDGKDVSNVMTQVRAGGQVNINSGRDTNLIGATVSGEQV 414 A GSQ+ + A +RG DG D+ N + + AG Q ++ SG DTN+ G+TVS + V Sbjct: 1865 AMGGSQNGFTLELGANRARGNLDGDDLVNKASTISAGNQASLISGGDTNVRGSTVSAKTV 1924 Query: 415 VANVGRDLNIASVQDTSTFKSRDQS--VGGSATIG----YGSGASISASRSRVDADYASV 468 A +G DLNI S+QD ST+ S+ S VG S I S S S S S+ DY SV Sbjct: 1925 AAAIGGDLNIESLQDKSTYGSKQSSAGVGLSLCIPPFCYGASSVSGSLSGSKAKGDYQSV 1984 Query: 469 GQQAGIMAGNGGFQINVKGNTDLKGAQIASTDQSVEQGRNSLTTGTLTSSDIQNRSQYSA 528 QAGI AG+GGF++ V GNTDLKGA I+ST +++E G+N L TGTLT SDI N Y A Sbjct: 1985 VTQAGIKAGDGGFRLVVAGNTDLKGAVISSTAKAIEDGKNFLQTGTLTYSDISNHDAYEA 2044 Query: 529 ESQSAS--------------------VGTSGGKPGGGIGIGNASGSETSVTRSGVSGAAV 568 S S S PGG G + GS++SVTRSG+SG V Sbjct: 2045 SGYSVSGSMSSQLGDQSKAKTEADKAAANSRTGPGGSPGYSDTGGSQSSVTRSGISGGTV 2104 Query: 569 TITDAQAQQARTGQSSDQAVASLDASVRTGKDSSNSLSKSWDGNQLREDVEAQAKITQAF 628 ITD Q Q+A TGQS++Q +ASL+ V + KDSS +LSK+WDG LR+ VEA+A+I QAF Sbjct: 2105 IITDEQGQKAATGQSAEQILASLNRDVDSSKDSSGALSKAWDGEALRQQVEAEAQIRQAF 2164 Query: 629 GQQASTLIGNYAEEQQKKAADLRKQAADTSDPQQAKELNDQASALESKWGPDGKMRVLAH 688 GQ + IG+YA+ +++ + KQA D +QA +L +A ++WG DG R H Sbjct: 2165 GQTVAKSIGDYADTKERDLKNAAKQAEQDGDAEQAAKLRAEA----ARWGEDGTARAAVH 2220 Query: 689 SIVGGLTGGLAGAAGAAAGTLTAPNVASALDKAGVDPDLAKALTGLSSALVGAAVGGTVG 748 + G L+GGLAGAA AAA + P++A + K G+ +L + +++ +GA +GG+ G Sbjct: 2221 AAAGALSGGLAGAASAAAVSKLMPSLAEQIKKMGLPSELEGVVAAAAASGLGAIIGGSAG 2280 Query: 749 GAAAYNEVVNNYLKHEED 766 A A +NN H+ + Sbjct: 2281 AATAVTVDLNNRQLHQSE 2298 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.306 0.122 0.324 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 2,559,251 Number of extensions: 94682 Number of successful extensions: 480 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 434 Number of HSP's successfully gapped: 8 Length of query: 1055 Length of database: 1,619,870 Length adjustment: 95 Effective length of query: 960 Effective length of database: 1,170,045 Effective search space: 1123243200 Effective search space used: 1123243200 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.6 bits) S2: 136 (57.0 bits)