BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4573.p (1375 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313371|ref|YP_003777463.1| hypothetical protein Hsero_4085... 1377 0.0 >gi|300313371|ref|YP_003777463.1| hypothetical protein Hsero_4085 [Herbaspirillum seropedicae SmR1] Length = 1383 Score = 1377 bits (3564), Expect = 0.0, Method: Compositional matrix adjust. Identities = 691/1366 (50%), Positives = 913/1366 (66%), Gaps = 16/1366 (1%) Query: 1 VAAIDFRNIRSNNKGQRDCFEMLAVQLFRANFTASPGAPFFSLRGDGGDGGVEAYFDTPT 60 + I+F+NIRS QRD FE L+VQLFR + F SLRGDGGDGGVEAYF TPT Sbjct: 1 MTTINFKNIRSTPTSQRDSFEALSVQLFRKCAKIPTNSSFISLRGDGGDGGVEAYFRTPT 60 Query: 61 GKV-GVQAKYFFSLGSSEFNQIKGSLATALANHPTLTEYVIYIPFDLTGPVAAGNRGLSE 119 V GVQAKYFF L + E QI SL+ AL+NHPTL EY IYIPFDLTG VAAG RG S+ Sbjct: 61 DTVIGVQAKYFFKLDAPELTQIADSLSAALSNHPTLAEYHIYIPFDLTGRVAAGKRGKSQ 120 Query: 120 VERFEAWRVAEQDSAAAAGNTLTITLCSAATIISQFSALDKHGGMRRYWFDTQTLTTSHI 179 ERFE W+ + +AA +G L I L +AA+I SQ +D +GG+RRYWFD T+T+ I Sbjct: 121 AERFEEWKTKVESAAAESGRPLLIILATAASIQSQLQEIDIYGGVRRYWFDETTITSHQI 180 Query: 180 GQLLTEAERYAGPRYMAALDIATSAHRGLDFFGGTGDYASWYKETIVPQKESLTELYSKK 239 G LL +A +AGPRY A LDI T AH LD F G GDY +W E++ P L + Sbjct: 181 GHLLQQAIEFAGPRYTADLDIETHAHTVLDIFSGIGDYHTWVNESLEPHISRLQSTHDYG 240 Query: 240 LGALDVLTA---SENEAATRQLLTVIENLKLLKEDVTSAIGENTAQEIEKLIPILKKAER 296 +L +L +++ A ++ E K DV S+ T + +E+L P+L + Sbjct: 241 EESLQILPEEDRTQDRGAFGRIARAPECSGEGKSDVASS---RTLELLEQLSPLLSEHRS 297 Query: 297 IHKKTFDKTHGKEKDTPGFRQFSAEYMVSFPAEQMDTARQFISTVVSIQKDMASIECRAG 356 + + F K HG DTPGFRQF AEY VSFPA+ MD+AR + +++ + S E RA Sbjct: 298 LQETAFFKQHGPNSDTPGFRQFHAEYNVSFPAQGMDSARTYEKVCNELKRVLTSGEFRAS 357 Query: 357 SVQSLLLRGPAGIGKTHAIVSAAMRRFAKGGMSLISFGDDFENGEPWEVLRSKVGLGTHI 416 +V SLLL G A IGKTHAI+SAA RR +GGMSL+ FG++F+ EPWEVLRSK+G G+++ Sbjct: 358 TVSSLLLTGSASIGKTHAIISAANRRLKRGGMSLVVFGENFDGKEPWEVLRSKLGYGSNM 417 Query: 417 SRDELYGCFQACADSSGLPFVIYIDALNEIVDKHRWRKNLPQLLQQLKPYPGIKLCVSTR 476 +DEL+ Q+ A+ +GLPFVI+IDALNE ++ RW+ NLP L+Q LKPYPGIK+CVS R Sbjct: 418 GQDELFETLQSSAEHTGLPFVIFIDALNESTERRRWKGNLPALIQSLKPYPGIKICVSAR 477 Query: 477 DIYLAKVIDKTFPGFSFEHSGFAGNEYEALEGFAAFYHLDQEITPLFSKELNNPLFLHLA 536 D YL++V+D TF G F+H GFAG E+ AL+ FA +Y LD EITPLFS EL NPLFL L Sbjct: 478 DTYLSQVMDTTFKGLEFKHVGFAGKEFAALQAFAKYYGLDAEITPLFSPELRNPLFLQLT 537 Query: 537 CKALVAEGRRTLDMSLPGFKSLIDSHLEECDRKIRDHHDYVNRKNLTRAAMLALSKTLVE 596 CK LVAEGR TLD+SLPG SLI+SHL CD +R+ YVN +N+ R++ +ALS+ L E Sbjct: 538 CKTLVAEGRHTLDLSLPGLTSLIESHLNHCDTSVRERLQYVNPRNVVRSSAMALSRLLNE 597 Query: 597 ALPRNRTWDACIAVVKGLVGSEFTPESFLHLLELENLIILTQDDNDETSVRLGYQRYGDT 656 RTW+ C+ ++ ++G+E + ES L +E ENL+I+T ND TSVR+G++RYGDT Sbjct: 598 RPGPERTWENCVDALRPIIGAEASAESLLKEMEHENLVIVTIHPNDATSVRMGFERYGDT 657 Query: 657 MRAIQLIEDCSDNGKFDFDAMAGRLTSFIRQDVGVLDAVAVVLPEMQKLEITHARLKLPK 716 +RA++L+E+ + G+ D A+A L + G+L+A+A VLPE +EIT +L LP Sbjct: 658 LRALRLLEENAGAGQLDVAALATYLAKIDDSEAGLLEAIAAVLPERYSIEITSPKLGLPS 717 Query: 717 AVAYSSYVRSLIWRSRDSFDAETDVRMREALQ-ESDWKSVYEALFSLSLVPQHQLNAENW 775 A+ +YV SL RSR SFD +T+ R+ +L+ E W V+EA FSL LVP H LNAE W Sbjct: 718 ERAHRAYVSSLTSRSRASFDEDTNFRIHNSLRTEGLWLDVFEAFFSLCLVPGHPLNAELW 777 Query: 776 FSYFLTMQKMVDRDVFLNLSASSSFDGFGAARSLIISALKAKLTLWPDESRVLALCALGW 835 ++ F Q +V+RDV L +A SF AARSLI SALKA +++WP +SR LA+ ALGW Sbjct: 778 WADFFGKQTLVERDVNLTYAAHDSFKKDAAARSLINSALKANISIWPADSRRLAVHALGW 837 Query: 836 LTSCSDRRVRDLSSKGITRIISQFPTLAANAVGFFKDSDDDYIKEAISLSVYSACLLEEK 895 LTSCSDRR+RDLS+KG+ RI+ P LA F DDDYIKE + L++YSA LL+ Sbjct: 838 LTSCSDRRIRDLSAKGMARILEFEPALAEGLANSFAAIDDDYIKEYVCLAIYSAYLLKRD 897 Query: 896 QRSDYIPALNSMVNSRWIDSPNVHIRESVQLLADVLAADGLIPNAEIAGPNSRLKHALPA 955 + + +I AL ++V + W+DSPNV IRE+VQ LA + + + S +K +LP Sbjct: 898 EEASFIRALEAVVRNGWVDSPNVLIRETVQQLAKAIRKQCPLDETLVVSL-SGVKQSLPT 956 Query: 956 PWPTIDDTKPLFDIKEVPSNMRLIGRGLAPDFMRYQVESKISDFNLQAAGIKHENIGAWI 1015 WP + D +PL ++++P NM+L GLAPDF RYQVESKI +FNL+AAGI ENI WI Sbjct: 957 VWPKMADVEPL--LEDMPYNMKLWDSGLAPDFWRYQVESKIFNFNLEAAGISRENIACWI 1014 Query: 1016 VTETLRMGYPGRKKNTLTADRIIMSESGSGRGKDTYKERLGKKYYWIALHRLIGILADNV 1075 +++ GYPG++ L DR E GSGR ++ Y ERLGKKYYWIALHRL+GILADNV Sbjct: 1015 MSQAFLFGYPGKENRGLQIDRFFAREYGSGRAREGYAERLGKKYYWIALHRLLGILADNV 1074 Query: 1076 PIVCRYSESKLSPNRLWSVDSRKVDLTDVRDLSTGAVYPDEVIRGPRYAFPPIASTMKEW 1135 + +YS+ SP+R WS+D RKVDLTDVRD++ YPDE+I G RYAFP S W Sbjct: 1075 SVESKYSDEVFSPDRSWSMDVRKVDLTDVRDIAPAKSYPDEIIEGGRYAFPERTSDTIAW 1134 Query: 1136 VINDDFSPHADCLIRRSDDGTEWIPLWISVRDNDR--EDSEWSNPYLTVDIFYRSVFVAK 1193 V DFSPH DCL+R ++D +EW+PLW S RDND+ +S WS YL VD+FY+++F Sbjct: 1135 VKARDFSPHQDCLLRIANDKSEWVPLWFSARDNDKNPHESSWSGDYLNVDLFYKAMFARA 1194 Query: 1194 DISKGDLSR--LERVADSTCNPYRGFFAEYPRGEAFTQLSTEGYMDLGGDGLSIGIVSLL 1251 D + +R LER+ C+PY+G+FAEYP G+ ++QL+ EGYM LG +G S+ +V+LL Sbjct: 1195 DGLEARNTRQELERLGQHDCHPYKGYFAEYPDGDVYSQLADEGYMYLGRNGTSLAMVTLL 1254 Query: 1252 RGGEWEYDFSCEERPGNLDVPIPDFIEKLELKWDKQRGWIDRENKLCAFHTVSPKRDALF 1311 RG EW+YD+S E R +L+VP PD I L+L WD QRGW++ +L F T + KR L+ Sbjct: 1255 RGNEWDYDYSWESRAESLNVPSPDIIRTLKLHWDHQRGWLNSAGELVVFETSAEKRSGLY 1314 Query: 1312 VKREALNLYLQMTKQHLMFFNYRNKGFIVQTSGDSEQIDRNAFLLY 1357 ++RE L YL +T+ L++ + NKG I Q G S Q+D N L Y Sbjct: 1315 IRREDLLQYLDLTQSVLVYRVFANKGHIDQL-GVSPQVDINTLLAY 1359 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.136 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 4,162,573 Number of extensions: 172634 Number of successful extensions: 428 Number of sequences better than 1.0e-08: 1 Number of HSP's gapped: 421 Number of HSP's successfully gapped: 1 Length of query: 1375 Length of database: 1,619,870 Length adjustment: 97 Effective length of query: 1278 Effective length of database: 1,160,575 Effective search space: 1483214850 Effective search space used: 1483214850 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 137 (57.4 bits)