BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4568.p
         (544 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313972|ref|YP_003778064.1| acetyl/propionyl-CoA carboxylas...  1071   0.0  

>gi|300313972|ref|YP_003778064.1| acetyl/propionyl-CoA carboxylase
           subunit beta [Herbaspirillum seropedicae SmR1]
          Length = 544

 Score = 1071 bits (2771), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 516/544 (94%), Positives = 531/544 (97%)

Query: 1   MPQIESKLNPRSEEFQHNRQAMQVLVDDLRQKVAAIAEGGGAAAREKHVARGKLLPRERV 60
           MPQIESKLNPRSE+FQ+NR AMQ +VDDLR+K+AAIAEGGG AAREKH+ARGKLLPR+RV
Sbjct: 1   MPQIESKLNPRSEDFQNNRAAMQRIVDDLREKIAAIAEGGGQAAREKHLARGKLLPRDRV 60

Query: 61  QMLLDPGTPFLEFSQLAAYGMYREQDRDGHHKDAAPSAGIITGIGRVAGQECVIVCNDAT 120
           QMLLDPGTPFLEFSQLAAYGMYRE+DRDG  KDAAPSAGIITGIGRVAGQECVIVCNDAT
Sbjct: 61  QMLLDPGTPFLEFSQLAAYGMYREKDRDGQPKDAAPSAGIITGIGRVAGQECVIVCNDAT 120

Query: 121 VKGGTYYPMTAKKHLRAQEIAQFNHLPCIYLVDSGGANLPNQDEVFPDRDHFGRIFYNQA 180
           VKGGTYYPMTAKKHLRAQEIA+FNHLPCIYLVDSGGANLPNQDEVFPDRDHFGRIFYNQA
Sbjct: 121 VKGGTYYPMTAKKHLRAQEIAEFNHLPCIYLVDSGGANLPNQDEVFPDRDHFGRIFYNQA 180

Query: 181 NLSAQGIPQIAVVMGSCTAGGAYVPAMSDESIIVKEQATIFLAGPPLVKAATGEVVSAEE 240
           NLSA+GI QIAVVMGSCTAGGAYVPAMSDESIIVK+QATIFLAGPPLVKAATGEVVSAEE
Sbjct: 181 NLSAKGIAQIAVVMGSCTAGGAYVPAMSDESIIVKDQATIFLAGPPLVKAATGEVVSAEE 240

Query: 241 LGGGDVHTRLSGVADHLAQDDTHALAIARNIVGHLNRRKPQQLALRASVEPNYPAHELYG 300
           LGGGDVHTRLSGVADHLAQDDTHALAIARNIVGHLNRRKPQ LALR S+EP YPA ELYG
Sbjct: 241 LGGGDVHTRLSGVADHLAQDDTHALAIARNIVGHLNRRKPQPLALRESIEPRYPAQELYG 300

Query: 301 VIPTDTRKPFDVREVIARIVDASQFDEFKARYGTTLVCGFAHLQGMPVGIIANNGILFSE 360
           VIPTDTRKPFDVREVIARIVDAS+FDEFKARYGTTLVCGFAHL GMPVGIIANNGILFSE
Sbjct: 301 VIPTDTRKPFDVREVIARIVDASEFDEFKARYGTTLVCGFAHLHGMPVGIIANNGILFSE 360

Query: 361 SAEKGTHFIELCCQRKIPLIFLQNITGFMVGKKAENEGIARHGAKMVTAVSTAKVPKLTV 420
           +AEKGTHFIELCCQRKIPLIFLQNITGFMVGKK ENEGIARHGAKMVTAVSTAKVPKLTV
Sbjct: 361 AAEKGTHFIELCCQRKIPLIFLQNITGFMVGKKYENEGIARHGAKMVTAVSTAKVPKLTV 420

Query: 421 IIGGSFGAGNYGMCGRAFSPRFLWMWPNARISVMGGEQAASVLATVKRDGIEARGGNWST 480
           IIGGSFGAGNYGMCGRAFSPRFLWMWPNARISVMGGEQAASVLATVKRDGIEARGG+WS 
Sbjct: 421 IIGGSFGAGNYGMCGRAFSPRFLWMWPNARISVMGGEQAASVLATVKRDGIEARGGSWSA 480

Query: 481 EEEAAFKEPIRAQYETQGHPYYASARLWDDGVIDPADTRQVLALGLSAALNAPIEETRFG 540
           EEEAAFKEPIRAQYETQGHPYYASARLWDDGVIDPADTRQVLALGLSAALNAPIEETRFG
Sbjct: 481 EEEAAFKEPIRAQYETQGHPYYASARLWDDGVIDPADTRQVLALGLSAALNAPIEETRFG 540

Query: 541 VFRI 544
           VFRI
Sbjct: 541 VFRI 544


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.136    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,751,370
Number of extensions: 76171
Number of successful extensions: 214
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 214
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 1,619,870
Length adjustment: 90
Effective length of query: 454
Effective length of database: 1,193,720
Effective search space: 541948880
Effective search space used: 541948880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 133 (55.8 bits)