BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4567.p
         (138 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313971|ref|YP_003778063.1| hypothetical protein Hsero_4689...   255   8e-70

>gi|300313971|ref|YP_003778063.1| hypothetical protein Hsero_4689
           [Herbaspirillum seropedicae SmR1]
          Length = 136

 Score =  255 bits (652), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 121/138 (87%), Positives = 129/138 (93%), Gaps = 2/138 (1%)

Query: 1   MSHKKDKSGPCPCGQPSFDQCCGRFIGGGQIPETAELLMRSRYSAFALRDEAYLRATWFP 60
           MS+KKDK+  CPCGQPSFD+CCGRFI GGQIP TA+LLMRSRYSAFALRDEAYLRATWFP
Sbjct: 1   MSNKKDKA--CPCGQPSFDKCCGRFITGGQIPATADLLMRSRYSAFALRDEAYLRATWFP 58

Query: 61  DTLPEEELTSETDVKWIGLDIKNHQHASDSDEATVEFVARFKVAGRAHRLHEISHFVRQP 120
           DTLPEEELTSETDVKWIGLDIK HQH + SDEATVEFVARFKVAGRAHRLHEIS+FVRQP
Sbjct: 59  DTLPEEELTSETDVKWIGLDIKKHQHVAGSDEATVEFVARFKVAGRAHRLHEISNFVRQP 118

Query: 121 DATGQLRWYYVDGRFPDD 138
           DA GQ+RWYYVDG FP+D
Sbjct: 119 DAAGQMRWYYVDGSFPED 136


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.137    0.442 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 481,162
Number of extensions: 18366
Number of successful extensions: 33
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 32
Number of HSP's successfully gapped: 1
Length of query: 138
Length of database: 1,619,870
Length adjustment: 76
Effective length of query: 62
Effective length of database: 1,260,010
Effective search space: 78120620
Effective search space used: 78120620
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 126 (53.1 bits)