BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4556.p
         (165 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313956|ref|YP_003778048.1| hypothetical protein Hsero_4674...   225   2e-60

>gi|300313956|ref|YP_003778048.1| hypothetical protein Hsero_4674
           [Herbaspirillum seropedicae SmR1]
          Length = 165

 Score =  225 bits (573), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 147/165 (89%), Positives = 153/165 (92%)

Query: 1   MKFRTLFLIVLLALVAIFAAVNWTAFTATTTLSLIYTEFQAPLGAVMLGVVVVLTAFFLL 60
           M+FRT+ LIVLLALVAIFAAVNWTAFT  +TLSLIYT+FQAP+G VMLGVVVVLTAFFLL
Sbjct: 1   MRFRTILLIVLLALVAIFAAVNWTAFTTPSTLSLIYTDFQAPVGLVMLGVVVVLTAFFLL 60

Query: 61  YILALQTSVMLESRRLTKQLEAQRALADQAEHSRFNDLRNYLKTELEQLQTRQSEQQTLL 120
           YILALQTSVMLESRRLTKQLEAQR LADQAEHSRFNDLR YLKTEL QLQ RQSEQQTLL
Sbjct: 61  YILALQTSVMLESRRLTKQLEAQRTLADQAEHSRFNDLRGYLKTELAQLQQRQSEQQTLL 120

Query: 121 AQRLDALQRDIHQRVEQTENAVAAQVGELDDRLQRQQVAGAIRTM 165
           AQRLDALQRDIH RVEQTENAVAAQVGELDDRLQR  VAGAIR +
Sbjct: 121 AQRLDALQRDIHLRVEQTENAVAAQVGELDDRLQRHNVAGAIRPL 165


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.133    0.353 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 310,626
Number of extensions: 9457
Number of successful extensions: 85
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 85
Number of HSP's successfully gapped: 1
Length of query: 165
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 87
Effective length of database: 1,250,540
Effective search space: 108796980
Effective search space used: 108796980
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 127 (53.5 bits)