BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4555.p
         (175 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313955|ref|YP_003778047.1| thioredoxin protein [Herbaspiri...   313   6e-87
gi|300309732|ref|YP_003773824.1| thioredoxin-related transmembra...    64   6e-12

>gi|300313955|ref|YP_003778047.1| thioredoxin protein
           [Herbaspirillum seropedicae SmR1]
          Length = 175

 Score =  313 bits (801), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 161/175 (92%), Positives = 166/175 (94%)

Query: 1   MQAQANAAKSGLMIKLAAVVVVAAIAAFAYFKVNAGNAAPDVTFTQLDGQQVALKDLRGK 60
           MQAQ NA+KSGLMIKLAA+ VVAAIAAF YFKVNAGNAAPDVTFT+LDGQQV LKDLRGK
Sbjct: 1   MQAQPNASKSGLMIKLAALAVVAAIAAFTYFKVNAGNAAPDVTFTKLDGQQVNLKDLRGK 60

Query: 61  VVMVNFWATSCTTCVGEMPKMIDTYNKFKDRGLDFVAVAMSYDPPNYVLNYTETRKLPFK 120
           VVMVNFWATSCTTCVGEMP+MIDTYNKFKDRGLDFVAVAMSYDPPNYVLNYTETRKLPFK
Sbjct: 61  VVMVNFWATSCTTCVGEMPQMIDTYNKFKDRGLDFVAVAMSYDPPNYVLNYTETRKLPFK 120

Query: 121 VALDTQDKLANAFGDVKLTPTTFVIGKDGNIIKRYVGEPQFAELHQLLEKALAAA 175
           VALD QD LA AFGDVKLTPTTFVI K GNIIKRYVGEPQFAELHQLLEKAL+AA
Sbjct: 121 VALDPQDTLAKAFGDVKLTPTTFVIDKQGNIIKRYVGEPQFAELHQLLEKALSAA 175


>gi|300309732|ref|YP_003773824.1| thioredoxin-related transmembrane
           protein [Herbaspirillum seropedicae SmR1]
          Length = 173

 Score = 64.3 bits (155), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 62/132 (46%), Gaps = 8/132 (6%)

Query: 40  PDVTFTQLDGQQVALKDLRGKVVMVNFWATSCTTCVGEMPKMIDTYNKFKDRGLDFVAVA 99
           PD T     GQ  +L   RGK ++VNFWAT C  CV EMP++     +     +  + V 
Sbjct: 48  PDAT-----GQMQSLAQYRGKPLIVNFWATWCGPCVEEMPELTALQQEIAPVQILGIGVD 102

Query: 100 MSYDPPNYVLNYTETRKLPFKVALDTQDKLANAFGD-VKLTPTTFVIGKDGNIIKRYVGE 158
              +   +   Y    + P  VA      L   FG+     P T ++GKDGN+ K Y+G 
Sbjct: 103 SQENIGKFAQKY--QIRYPLFVAGTGATDLLRQFGNQAGGLPFTALVGKDGNVKKIYLGR 160

Query: 159 PQFAELHQLLEK 170
            +F EL Q L +
Sbjct: 161 LKFDELRQDLSQ 172


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.134    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 461,270
Number of extensions: 16143
Number of successful extensions: 46
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 45
Number of HSP's successfully gapped: 2
Length of query: 175
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 96
Effective length of database: 1,245,805
Effective search space: 119597280
Effective search space used: 119597280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 127 (53.5 bits)