BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4553.p
         (198 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313953|ref|YP_003778045.1| phosphoheptose isomerase [Herba...   375   e-105
gi|300313700|ref|YP_003777792.1| sedoheptulose 7-phosphate isome...   154   4e-39

>gi|300313953|ref|YP_003778045.1| phosphoheptose isomerase
           [Herbaspirillum seropedicae SmR1]
          Length = 198

 Score =  375 bits (962), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 192/198 (96%), Positives = 197/198 (99%)

Query: 1   MTNPRILAHFQESADLKMKAASVLAQPIEQAIELMFTALSNGNKILACGNGGSAADSQHF 60
           MTNPRILAHFQESADLKMKAASVLAQPIEQAIELMFTALSNGNKILACGNGGSAADSQHF
Sbjct: 1   MTNPRILAHFQESADLKMKAASVLAQPIEQAIELMFTALSNGNKILACGNGGSAADSQHF 60

Query: 61  AAELVGRFERERLPLPALALTTDTSILTAVGNDYSYQEIFSKQVQAFGQAGDILLAFSTS 120
           AAELVGRFERERLPLPALALTTDTSILTAVGNDYSYQEIFSKQVQAFGQ+GDILLAFSTS
Sbjct: 61  AAELVGRFERERLPLPALALTTDTSILTAVGNDYSYQEIFSKQVQAFGQSGDILLAFSTS 120

Query: 121 GNSGNILAAIEVAHERDMRVVALTGKGGGKIGKILTDADVHICVPHDRTARIQEVHLVSL 180
           GNSGNILAAIEVAHERDMRVVALTGKGGGKIGK+L DADVHICVPHDRTARIQEVHLV+L
Sbjct: 121 GNSGNILAAIEVAHERDMRVVALTGKGGGKIGKVLNDADVHICVPHDRTARIQEVHLVTL 180

Query: 181 HCICDGIDVALFGDEANE 198
           HCICDGIDVALFGD+A+E
Sbjct: 181 HCICDGIDVALFGDDAHE 198


>gi|300313700|ref|YP_003777792.1| sedoheptulose 7-phosphate
           isomerase [Herbaspirillum seropedicae SmR1]
          Length = 195

 Score =  154 bits (390), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 88/202 (43%), Positives = 120/202 (59%), Gaps = 15/202 (7%)

Query: 1   MTNPRILAHFQESADLKMKAASVLAQPIEQAIELMF--------TALSNGNKILACGNGG 52
           M++P  L   Q + D  ++A   L Q  E A   +F         A  NG +I   GNGG
Sbjct: 1   MSSP--LLRLQRNLDASIRAKQQLMQ--ESATLAVFDAAVAATIAAYRNGRRIYIAGNGG 56

Query: 53  SAADSQHFAAELVGRFERERLPLPALALTTDTSILTAVGNDYSYQEIFSKQVQAFGQAGD 112
           SAAD+QH AAE V +  R+R PLPA ALTTD+SILTA+GNDY Y+++FS+Q+     AGD
Sbjct: 57  SAADAQHLAAEFVSKLARDRAPLPAEALTTDSSILTAIGNDYGYEQVFSRQLAGKAVAGD 116

Query: 113 ILLAFSTSGNSGNILAAIEVAHERDMRVVALTGKGGGKIGKILTDADVHICVPHDRTARI 172
           I L  +TSG S NIL A+E      +  +  TG+ GG    +   AD  I VP + T+ I
Sbjct: 117 IFLGITTSGRSPNILRALEQCRAMGVPSILFTGRDGGPARPL---ADHAIVVPGEATSTI 173

Query: 173 QEVHLVSLHCICDGIDVALFGD 194
           QE+H+V  H +C+ ++ ALFG+
Sbjct: 174 QELHIVLAHTLCESVEAALFGE 195


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.134    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 486,956
Number of extensions: 14986
Number of successful extensions: 72
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 71
Number of HSP's successfully gapped: 2
Length of query: 198
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 118
Effective length of database: 1,241,070
Effective search space: 146446260
Effective search space used: 146446260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)