BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4551.p
         (421 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313951|ref|YP_003778043.1| glycosylase [Herbaspirillum ser...   666   0.0  

>gi|300313951|ref|YP_003778043.1| glycosylase [Herbaspirillum
           seropedicae SmR1]
          Length = 427

 Score =  666 bits (1719), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/427 (80%), Positives = 380/427 (88%), Gaps = 6/427 (1%)

Query: 1   MFTGLKKMTAQAALLASVLAPWMVTA--SAAAADSVPLLAQAATPA---SSATNSNPAPL 55
           MFTGL KM+A+AAL+A +LA W   A  +A AADSVPLLAQ ATPA   +     N   +
Sbjct: 1   MFTGLMKMSARAALVAGLLASWAALAPNTATAADSVPLLAQTATPALPAAGVGAGNGGAV 60

Query: 56  ALPPGTSPEMEA-AAEGAAAAPAAAPIRMVLLLPSRSGAFGAAADAVRMGLLTAYSRQKE 114
            LPPG+S E +A AA   A   AAAP+RM +LLP+RSGAFGAAADAVR GLLTAYSRQK+
Sbjct: 61  ILPPGSSSEAQAEAAGLPATPAAAAPVRMAVLLPNRSGAFGAAADAVRTGLLTAYSRQKD 120

Query: 115 NIQLAIVETGDSAADMQRAYDEAASKYDILIGPLSRSAVTAVAQSGRVNKPTVALAQPDM 174
           NIQL+I+ETGDSAADMQRAYDEA++++DILIGPLSRSAVTAVAQSGRV+KPT+ALAQPDM
Sbjct: 121 NIQLSIIETGDSAADMQRAYDEASARFDILIGPLSRSAVTAVAQSGRVSKPTIALAQPDM 180

Query: 175 NGEADLPLPPQMLAVGLSIDEEARQVANWVEKEKAPGKIFAVSTGIAWQKRAARSFQLRA 234
            GE ++ LP QMLAVGLSIDEEARQVANWVEKEKAPGKIFA+STG+AWQKRAARSFQLRA
Sbjct: 181 AGEGEMQLPAQMLAVGLSIDEEARQVANWVEKEKAPGKIFAISTGVAWQKRAARSFQLRA 240

Query: 235 RQLGLQVETLELSTPANALSAPGLAQLAKRVEQEKPALIFVALDAAQTAQLRSAVGNELP 294
           RQLG+QVETLELSTP+NALSAPGLAQLAKRVEQEKPAL+F+ALDA+Q  QLRSAVG ELP
Sbjct: 241 RQLGMQVETLELSTPSNALSAPGLAQLAKRVEQEKPALLFLALDASQAVQLRSAVGTELP 300

Query: 295 LYGTSQINPYTLKRDNPNDKLPELDGVRLIDIPWQLQPDNLAVARYPRPAINDGERPNAD 354
           LYGTSQINP+TLKRDNPNDKLPELDGVRLIDIPWQLQ DN+AVARYPRP IND ERPN D
Sbjct: 301 LYGTSQINPFTLKRDNPNDKLPELDGVRLIDIPWQLQADNVAVARYPRPTINDNERPNPD 360

Query: 355 LARLYALGIDAYRVAYGIAQRQSSFDIDGVTGRLNVNMNSGGATFFQRQETQAVYQDGWP 414
           LARLYALGIDAYR+AYGIAQ++S FD+DGVTGRLNVNM SGGAT+FQRQETQA+YQDGWP
Sbjct: 361 LARLYALGIDAYRIAYGIAQQRSGFDVDGVTGRLNVNMVSGGATYFQRQETQAIYQDGWP 420

Query: 415 VPLADQY 421
           VP ADQY
Sbjct: 421 VPTADQY 427


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.314    0.129    0.364 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,204,787
Number of extensions: 48606
Number of successful extensions: 220
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 218
Number of HSP's successfully gapped: 1
Length of query: 421
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 333
Effective length of database: 1,203,190
Effective search space: 400662270
Effective search space used: 400662270
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 132 (55.5 bits)