BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4550.p
         (307 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313950|ref|YP_003778042.1| methyltransferase [Herbaspirill...   524   e-150
gi|300311215|ref|YP_003775307.1| methyltransferase transmembrane...    65   7e-12

>gi|300313950|ref|YP_003778042.1| methyltransferase [Herbaspirillum
           seropedicae SmR1]
          Length = 311

 Score =  524 bits (1349), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 263/299 (87%), Positives = 276/299 (92%)

Query: 1   MNQNSSVAAAILQDAAQQTYPVSALYVLATPIGNVCDISLRGLHVLALADAVACEDTRNT 60
           MNQNSSVAA ILQDAAQQ YPVSALYVLATPIGNVCDISLRGLH+L++ADAVACEDTRNT
Sbjct: 1   MNQNSSVAATILQDAAQQNYPVSALYVLATPIGNVCDISLRGLHLLSIADAVACEDTRNT 60

Query: 61  SQLLQRYGLSKQLLATHEHNEREAAAKIIERLQAGQRVALVSDAGTPAVSDPGARVVDAV 120
           SQLLQRYGLS+ LLATHEHNEREAAAKIIERL AGQRVALVSDAGTPAVSDPGARVVDAV
Sbjct: 61  SQLLQRYGLSRPLLATHEHNEREAAAKIIERLHAGQRVALVSDAGTPAVSDPGARVVDAV 120

Query: 121 RAAGFQVIPLPGASAAVTALSASGLADARFLFVGFLPAKTRQRETALQELVDQQAALVFY 180
           RAAG +VIPLPGASAA+TALSASGL D RF FVGFLPAKTRQRETALQELV+  AALVFY
Sbjct: 121 RAAGLRVIPLPGASAAITALSASGLTDERFHFVGFLPAKTRQRETALQELVELPAALVFY 180

Query: 181 EAPHRIVETVQSMLQVFGPTRQVVLARELTKLFEHIHRCPLGEAPAWLEQDANRQRGEFV 240
           EAPHRIVETVQS+LQVFGP RQVVLARELTKLFE IHRC LGEAP WL QDANRQRGEFV
Sbjct: 181 EAPHRIVETVQSLLQVFGPQRQVVLARELTKLFEDIHRCSLGEAPDWLAQDANRQRGEFV 240

Query: 241 VLLEGAQPVEGEDAEGERVLRILLEELPVKQAAALAAQITGQKKNALYERALQIRQGAQ 299
           +L+EGA   EG+ AE ERVLRILL ELPV+QAAALAAQITG KKNALY+RAL IRQGAQ
Sbjct: 241 ILVEGAPVTEGDGAEAERVLRILLAELPVRQAAALAAQITGVKKNALYDRALAIRQGAQ 299


>gi|300311215|ref|YP_003775307.1| methyltransferase transmembrane
           protein [Herbaspirillum seropedicae SmR1]
          Length = 254

 Score = 65.1 bits (157), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 40/120 (33%), Positives = 63/120 (52%), Gaps = 4/120 (3%)

Query: 95  GQRVALVSDAGTPAVSDPGARVVDAVRAAGFQVIPLPGASAAVTALSASGLADARFLFVG 154
           G+   L+S+AG PAV+DPGA +V      G QV PL G S+ + A+ ASGL    F F G
Sbjct: 97  GRDGGLISEAGVPAVADPGANLVRLAHQHGIQVRPLVGPSSLLLAVMASGLNGQSFAFNG 156

Query: 155 FLPAKTRQRETALQELVD----QQAALVFYEAPHRIVETVQSMLQVFGPTRQVVLARELT 210
           +LP     R   +++L D    ++   +  E P+R    + ++ Q   P   + +A +L+
Sbjct: 157 YLPTDAEARSKRIRQLEDRSRKEKQTQLLIETPYRNGAMLDALAQSCQPGTLICVATDLS 216


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.131    0.359 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 868,343
Number of extensions: 34899
Number of successful extensions: 178
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 178
Number of HSP's successfully gapped: 2
Length of query: 307
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 222
Effective length of database: 1,217,395
Effective search space: 270261690
Effective search space used: 270261690
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)