BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4549.p
         (409 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313949|ref|YP_003778041.1| lipoprotein [Herbaspirillum ser...   626   0.0  

>gi|300313949|ref|YP_003778041.1| lipoprotein [Herbaspirillum
           seropedicae SmR1]
          Length = 398

 Score =  626 bits (1615), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/368 (89%), Positives = 344/368 (93%), Gaps = 4/368 (1%)

Query: 42  CGTTQQSPYQGAQVPGTPTKSASARPSNVPALPAAGSGRGGYYKDDGPGDHIPDGLLDVA 101
           CGTT  +  QG     TP K+ S+RPSNVPALPAAGSGRGGYYKDDGPGDHIPDGLLDVA
Sbjct: 35  CGTTPPASRQGGVQAPTPVKAGSSRPSNVPALPAAGSGRGGYYKDDGPGDHIPDGLLDVA 94

Query: 102 DAEPQVEPISKAASRPYAVFGKTYVPITDNNQPFIQRGIGSWYGKKFHGQKTSSGELYDM 161
           DAEPQVEP+SKAASRPYAVFGKTYVPITDN QPF+QRGIGSWYGKKFHGQKTSSGELYDM
Sbjct: 95  DAEPQVEPVSKAASRPYAVFGKTYVPITDN-QPFVQRGIGSWYGKKFHGQKTSSGELYDM 153

Query: 162 YKMTAAHPTLPIPSYARVTNLKTGKQVIVRINDRGPFHSNRIIDLSYTAALKLGYLGTGS 221
           YKMTAAHPTLPIPSYARVTNLKTGKQVIVRINDRGPFHS+RIIDLSYTAALKLGYLG+GS
Sbjct: 154 YKMTAAHPTLPIPSYARVTNLKTGKQVIVRINDRGPFHSSRIIDLSYTAALKLGYLGSGS 213

Query: 222 SELEVERILPDEAQRMADARRNGSSTTMLAAADPINRAADTGAGVSTGAVEINRVSAQNL 281
           SELEVERILP+EAQRMADARRNG   T +AAADPIN+AAD GAGVSTGAVEIN VS QNL
Sbjct: 214 SELEVERILPEEAQRMADARRNG---TAVAAADPINKAADNGAGVSTGAVEINSVSTQNL 270

Query: 282 PPQPTVAAVQPINASTSSAAGGAGLAGGGGIINAVASGTAPSPAMPQAVPLTAGYYLQFG 341
           PPQPTVAAVQPINAST+SAA GAGL GGGGIINAVASG+APSPAMPQAVPLTAGYYLQFG
Sbjct: 271 PPQPTVAAVQPINASTTSAANGAGLNGGGGIINAVASGSAPSPAMPQAVPLTAGYYLQFG 330

Query: 342 AYSQEANALVARDKLLPSLSGIVDNMQAVQVNGLYRLYAGPYPTRPEAQNAAMLVRQRSA 401
           AYSQE NAL A++KLLPSLSGIVD+MQAVQVNGLYRLYAGPYPTRP AQNAAMLVRQRSA
Sbjct: 331 AYSQETNALQAKEKLLPSLSGIVDSMQAVQVNGLYRLYAGPYPTRPAAQNAAMLVRQRSA 390

Query: 402 GTPFIVER 409
           GTPFIVER
Sbjct: 391 GTPFIVER 398


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.314    0.131    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,334,270
Number of extensions: 59537
Number of successful extensions: 215
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 213
Number of HSP's successfully gapped: 1
Length of query: 409
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 322
Effective length of database: 1,207,925
Effective search space: 388951850
Effective search space used: 388951850
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 132 (55.5 bits)