BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4548.p
         (369 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313948|ref|YP_003778040.1| rod shape-determining (RodA pro...   696   0.0  
gi|300309677|ref|YP_003773769.1| rod shape-determining (RodA pro...   104   1e-23

>gi|300313948|ref|YP_003778040.1| rod shape-determining (RodA
           protein) transmembrane protein [Herbaspirillum
           seropedicae SmR1]
          Length = 369

 Score =  696 bits (1797), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/369 (97%), Positives = 367/369 (99%)

Query: 1   MSLQRPPLWQIIKPHLTVFDGALSLIVFLIVSVGIVTLYSAGMNFPGRVEDQLRNILVAF 60
           MSLQRPPLWQIIKPHLTVFDGALSLIVFLI+SVGIVTLYSAGMNFPGRVEDQLRNILVAF
Sbjct: 1   MSLQRPPLWQIIKPHLTVFDGALSLIVFLILSVGIVTLYSAGMNFPGRVEDQLRNILVAF 60

Query: 61  VIMWIAANVSPQLLLRLAVPVYTIGVTLLIAVALFGIIKKGSRRWLNIGMVVQPSEIMKI 120
           V+MWIAANVSPQLLLRLAVPVYT+GVTLLIAVALFGIIKKGSRRWLNIGMVVQPSEIMKI
Sbjct: 61  VVMWIAANVSPQLLLRLAVPVYTVGVTLLIAVALFGIIKKGSRRWLNIGMVVQPSEIMKI 120

Query: 121 AMPLMLAWYFQKREGMLRWDAFLVAAVLLLIPGFLIIRQPDLGTGLLVLAAGFYVIFFAG 180
           AMPLMLAWYFQKREGMLRWDAF+VAA+LLLIPGFLIIRQPDLGTGLLVLAAGFYVIFFAG
Sbjct: 121 AMPLMLAWYFQKREGMLRWDAFVVAAILLLIPGFLIIRQPDLGTGLLVLAAGFYVIFFAG 180

Query: 181 LPWKILLGLVIAGAASLPVVWSFMHDYQRQRVMMLIDPTSDPLGKGFHIIQSTIAIGSGG 240
           LPWKIL GL +AGAASLPVVWSFMHDYQRQRVMMLIDPTSDPLGKGFHIIQSTIAIGSGG
Sbjct: 181 LPWKILAGLFVAGAASLPVVWSFMHDYQRQRVMMLIDPTSDPLGKGFHIIQSTIAIGSGG 240

Query: 241 VTGKGWLMGTQTHLEFIPERTTDFIFSVYSEEFGLIGNIVLLILYLLLIGRGLMITANAP 300
           VTGKGWLMGTQTHLEFIPERTTDFIFSVYSEEFGLIGNIVLL+LYLLLIGRGLMITANAP
Sbjct: 241 VTGKGWLMGTQTHLEFIPERTTDFIFSVYSEEFGLIGNIVLLVLYLLLIGRGLMITANAP 300

Query: 301 SLFTRLLGGAITMIFFTYAFVNMGMVSGILPVVGVPLPFMSYGGTALVTLGLGAGILMSI 360
           +LFTRLLGGAITMIFFTYAFVNMGMVSGILPVVGVPLPFMSYGGTALVTLGLGAGILMSI
Sbjct: 301 TLFTRLLGGAITMIFFTYAFVNMGMVSGILPVVGVPLPFMSYGGTALVTLGLGAGILMSI 360

Query: 361 QRHRKLVQS 369
           QRHRKLVQS
Sbjct: 361 QRHRKLVQS 369


>gi|300309677|ref|YP_003773769.1| rod shape-determining (RodA
           protein) transmembrane protein [Herbaspirillum
           seropedicae SmR1]
          Length = 421

 Score =  104 bits (260), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 106/378 (28%), Positives = 194/378 (51%), Gaps = 27/378 (7%)

Query: 13  KPHLTVFDGALSLIVFLIVSVGIVTLYSAGM---NFPGRVEDQLRNILVAFVIMWIAANV 69
           +  +  +D  L  +V L++  G+V +YSA +   + P        + L+   I  + + +
Sbjct: 42  RSRMMEYDQPLIWVVLLLMLFGMVMVYSASVALPDSPKYASYSNYHFLIRQAIFIVLSII 101

Query: 70  SPQLLLRLAVPV------YTIGVTL--LIAVALFGIIK--KGSRRWLNIGMV-VQPSEIM 118
           +  L  R+ +        Y  G+TL  L+ V + G+ K   G++RWL++ ++ +QPSE+M
Sbjct: 102 AGALAFRVRIETWQKWAPYLFGITLILLLMVLVPGVGKGVNGAKRWLSLKIINLQPSELM 161

Query: 119 KIAMPLMLAWYFQKREGMLRW--DAFLVAAVLLLIPGFLIIRQPDLGTGLLVLAAGFYVI 176
           K+ + L  A Y  +++ ++      F   A  + + G L++ +PDLG   +++     ++
Sbjct: 162 KLFIVLYAADYTVRKQAVMHKLVKGFFPMAAAVGLVGLLLLLEPDLGAFGVIVCIAMGIL 221

Query: 177 FFAGLP--WKILLGLVIAGAASLPVVWSFMHDYQRQRVMMLIDP--TSDPLGKGFHIIQS 232
           F  G+   W   +G  + G  SL +V S    ++R+R+   ++P    + LGK + +  S
Sbjct: 222 FLGGINGVWFGGIGATLVGVFSLVIVTS---PWRRERIFAYLNPWEEENALGKAYQLSHS 278

Query: 233 TIAIGSGGVTGKGWLMGTQTHLEFIPERTTDFIFSVYSEEFGLIGNIVLLILYLLLIGRG 292
            IA G G + G G L  +   L ++PE  TDF+ +V  EE G +G +V+++L+  L+   
Sbjct: 279 LIAFGRGELFGVG-LGSSVEKLHYLPEAHTDFLLAVIGEELGFVGVLVVVLLFYWLVKHA 337

Query: 293 LMITANAPSL---FTRLLGGAITMIFFTYAFVNMGMVSGILPVVGVPLPFMSYGGTALVT 349
             I   A +L   F  L+   I +     AF+NMG+  G+LP  G+ LP MSYGG+ ++ 
Sbjct: 338 FEIGRQAIALDLTFAGLVAKGIGIWLGVQAFINMGVNLGLLPTKGLTLPLMSYGGSGVLL 397

Query: 350 LGLGAGILMSIQRHRKLV 367
             +G  IL+ I    +++
Sbjct: 398 NCVGLAILLRIDYENRVL 415


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.330    0.146    0.447 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,110,865
Number of extensions: 47671
Number of successful extensions: 194
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 189
Number of HSP's successfully gapped: 2
Length of query: 369
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 282
Effective length of database: 1,207,925
Effective search space: 340634850
Effective search space used: 340634850
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 131 (55.1 bits)