BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4547.p (657 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313947|ref|YP_003778039.1| cell division protein FtsI [Her... 1275 0.0 gi|300309672|ref|YP_003773764.1| cell division FtsI protein/peni... 134 3e-32 >gi|300313947|ref|YP_003778039.1| cell division protein FtsI [Herbaspirillum seropedicae SmR1] Length = 656 Score = 1275 bits (3299), Expect = 0.0, Method: Compositional matrix adjust. Identities = 635/658 (96%), Positives = 652/658 (99%), Gaps = 3/658 (0%) Query: 1 MTEFKNTAHELRLFRMRLLAASVLVLVCFSLLLARFLWLQVVRHDAYAAQAEENRISVVP 60 MTEFKNTAHELRLFR+RLLA SVLVLVCFSLLLARFLWLQVVRHDAYAAQAEENRISVVP Sbjct: 1 MTEFKNTAHELRLFRIRLLAVSVLVLVCFSLLLARFLWLQVVRHDAYAAQAEENRISVVP 60 Query: 61 IVPNRGLIMDRNGVVLARNYSAYTLEITPSKIKTNIDDLIDELSTIVEIQPRDRRRFRRL 120 IVPNRGLI+DRNGVVLARNYSAYTLEITPSKI+TNIDDLIDEL T+VEIQPRDRRRFRRL Sbjct: 61 IVPNRGLILDRNGVVLARNYSAYTLEITPSKIRTNIDDLIDELGTLVEIQPRDRRRFRRL 120 Query: 121 QEESKNFESVPIRTRLTDEEVAKFTAQRYRFPGVEVQARLFRQYPYGKTAAHVIGYIGRI 180 QEESKNFESVPIRTRLTDEEVAKFTAQRYRFPGVEVQARLFRQYPYGKTAAHVIGYIGRI Sbjct: 121 QEESKNFESVPIRTRLTDEEVAKFTAQRYRFPGVEVQARLFRQYPYGKTAAHVIGYIGRI 180 Query: 181 SQRDAERIADSDDEANYNGTDYIGKEGLEKSYETQLHGTTGYEEVEISASGRAVRSLSRT 240 SQRDAERIADSDDEANYNGTDYIGKEGLEKSYE+QLHGTTGYEEVEISASGRAVRSLSRT Sbjct: 181 SQRDAERIADSDDEANYNGTDYIGKEGLEKSYESQLHGTTGYEEVEISASGRAVRSLSRT 240 Query: 241 PATPGKNLILSIDIELQKVVEEAFGDQKGALVAINPATGDILAYVSQPSYDPNLFVEGID 300 PATPGKNLILSIDIELQKVVEEAFGDQKGALVAINPATGDILAYVSQPSYDPNLFVEGID Sbjct: 241 PATPGKNLILSIDIELQKVVEEAFGDQKGALVAINPATGDILAYVSQPSYDPNLFVEGID 300 Query: 301 QQSWDELNKSPDRPLLNRPLSGLYSPGSTYKPFMALAALELGKRRPQDAIRDPGFFVLGN 360 QQSWDELNKSPDRPLLNRPLSGLYSPGSTYKPFMALAALELGKRRPQDAIRDPG+F+LGN Sbjct: 301 QQSWDELNKSPDRPLLNRPLSGLYSPGSTYKPFMALAALELGKRRPQDAIRDPGYFILGN 360 Query: 361 HRFRDDKEGGHGIVDMYRSIVVSCDTYYYMLANDMGVNAIHDFMKPFGFGQITGIDLEHE 420 HRFRDDKEGGHG+VDMYRS+VVSCDTYYYMLANDMGVNAIHDFMKPFGFGQITGIDLEHE Sbjct: 361 HRFRDDKEGGHGVVDMYRSVVVSCDTYYYMLANDMGVNAIHDFMKPFGFGQITGIDLEHE 420 Query: 421 KRGILPSTDWKRTAFRKPEQKRWIAGDTVSLGIGQGYNSFTPLQLAQATAILANNGVVMK 480 KRGILPST+WKRTAFRKPEQKRWIAGDTVSLGIGQGYNSFTPLQLAQATAILANNGVVMK Sbjct: 421 KRGILPSTEWKRTAFRKPEQKRWIAGDTVSLGIGQGYNSFTPLQLAQATAILANNGVVMK 480 Query: 481 PHLVKIIEDGVTHERTETVPKESYRIPLKQENIDFIKRAMVGVVKEGTGAAAFRGAPYES 540 PHLVKI+EDGVTHERTETVPKESYRIP+KQENIDFIKRAMVGVVKEGTGAAAFRGAPYES Sbjct: 481 PHLVKIVEDGVTHERTETVPKESYRIPMKQENIDFIKRAMVGVVKEGTGAAAFRGAPYES 540 Query: 541 GGKTGTAQVVNIAKNQKYDSKKLSRIFHDNGLYIGFAPADAPRIAIAAVVENGGWGAGVA 600 GGKTGTAQVVNIAKNQKYDSKKLSRI+HDNGLYIGFAPADAPRIAIAAVVENGGWGAGVA Sbjct: 541 GGKTGTAQVVNIAKNQKYDSKKLSRIYHDNGLYIGFAPADAPRIAIAAVVENGGWGAGVA 600 Query: 601 APLVRKAMDYFMLGKRPNEPIKSVAP-EAVSADTPVEGPTSEEGGSSNTPTVQPDVQE 657 APLVRKAMDYFMLGKRPNEPIKS+AP EAV+ADTPVEGPTSE+ G+ TPTVQPDVQE Sbjct: 601 APLVRKAMDYFMLGKRPNEPIKSIAPAEAVTADTPVEGPTSEDNGA--TPTVQPDVQE 656 >gi|300309672|ref|YP_003773764.1| cell division FtsI protein/penicillin-binding protein 2 [Herbaspirillum seropedicae SmR1] Length = 592 Score = 134 bits (336), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 152/604 (25%), Positives = 244/604 (40%), Gaps = 113/604 (18%) Query: 24 LVLVCFSLLLARFLWLQVVRHDAYAAQAEENRISVVPIVPNRGLIMDRNGVVLARNYSAY 83 ++ V F L+ R LWLQ V D Q + + RG I DRNG VLA + Sbjct: 44 VLFVAFVALVLRALWLQGVSTDFLQKQGASRYARTLELPATRGKITDRNGQVLASSVPVK 103 Query: 84 TLEITPSKIKTNIDDLIDELSTIVEIQPRDRRRFRRLQEESKNFESVPIRTRLTDEEVAK 143 + P ++ D + +L+ ++E+ D R+ + ++F V ++ ++ + K Sbjct: 104 AIWAIPEDVQAAPKDKLVQLAKLLEMSDAD---LRKKLDSDRSF--VYLKRQVEQDTADK 158 Query: 144 FTAQRYRFPGVEVQARLFRQYPYGKTAAHVIGYIGRISQRDAERIADSDDEANYNGTDYI 203 + PG+E + R YP G+ AHV+G+ I D+ Sbjct: 159 IV--KLGIPGIETRKEYKRFYPEGEVMAHVVGF---------TNIEDA------------ 195 Query: 204 GKEGLEKSYETQLHGTTGYEEVEISASGRAVRSLS--RTPATPGKNLILSIDIELQ---- 257 G++G+E + + L G TG V GR V + R P G++L LSID ++Q Sbjct: 196 GQDGMELAAQKTLAGVTGSRRVIKDRLGRVVEDIESIREPHD-GRDLTLSIDSKIQYIAF 254 Query: 258 ---KVVEEAFGDQKGALVAINPATGDILAYVSQPSYDPNLFVEGIDQQSWDELNKSPDRP 314 K E F + G ++ ++ TG++LA + P+Y+PN DR Sbjct: 255 TQLKEAVEKFKAKAGGIIVVDAKTGEVLALANLPTYNPN------------------DRS 296 Query: 315 LL------NRPLSGLYSPGSTYKPFMALAALELGKRRPQDAIRD-PGFFVLGNHRFRDDK 367 +L NR ++ + PGST KPF AL+ + P + PG +G D Sbjct: 297 VLTGAQLRNRVVTDTFEPGSTMKPFTVALALDTHRVTPSTVFQTAPGKMTIGTATIGDSH 356 Query: 368 EGGHGIVDMYRSIVVSCDTYYYMLANDMGVNAIHDFMKPFGFGQITGIDLEHEKRGILPS 427 HG + + + I S + +A M + + GFGQ K G P Sbjct: 357 --AHGPLTVAQIIEKSSNIGTAKIALGMPPEEMWEMFTTVGFGQ-------QPKFG-FPG 406 Query: 428 TDWKRTAFRKPEQKRWIAGDTVSLGIGQGYNSFTPLQLAQATAILANNGVVMKPHLVKII 487 A R K W + ++ G G S + +QLA A I A NG ++ K+ Sbjct: 407 A----VAGRVRPYKSWRPIEQATMSYGHGI-SVSLIQLAHAYLIFARNGDIIPLSFTKVT 461 Query: 488 EDGVTHERTETVPKESYRIPLKQENIDF-----IKRAMVGVVKEGTGAAAFRGAPYESGG 542 + P+ Q I ++R + VV G A + Y GG Sbjct: 462 DS-----------------PIGQRVISADTALQMRRMLETVVAPGGTAPQAQVPGYRVGG 504 Query: 543 KTGTAQVVNIAKNQKYDSKKLSRIFHDNGLYIGFAPADAPRIAIAAVV---ENGGWGAGV 599 KTGTA + + KY K ++ + G AP PR+ I+ ++ + +G V Sbjct: 505 KTGTAYKI---EGGKYVRKYVAS-------FSGIAPMSDPRLIISVMIDEPQGQHYGGPV 554 Query: 600 AAPL 603 A P+ Sbjct: 555 AGPV 558 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.317 0.136 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 2,029,887 Number of extensions: 86596 Number of successful extensions: 226 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 218 Number of HSP's successfully gapped: 2 Length of query: 657 Length of database: 1,619,870 Length adjustment: 91 Effective length of query: 566 Effective length of database: 1,188,985 Effective search space: 672965510 Effective search space used: 672965510 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 134 (56.2 bits)