BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4541.p
         (486 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313941|ref|YP_003778033.1| Asp-tRNAAsn/Glu-tRNAGln amidotr...   987   0.0  

>gi|300313941|ref|YP_003778033.1| Asp-tRNAAsn/Glu-tRNAGln
           amidotransferase subunit B [Herbaspirillum seropedicae
           SmR1]
          Length = 486

 Score =  987 bits (2552), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 479/485 (98%), Positives = 483/485 (99%)

Query: 1   MQWEVVIGLETHTQLSTQSKIFSGSSTRFGAEPNTQASPVDLALPGVLPVLNKGAVERAI 60
           MQWEVVIGLETHTQLSTQSKIFSGS TRFGAEPNTQASPVDLALPGVLPVLNKGAVERAI
Sbjct: 1   MQWEVVIGLETHTQLSTQSKIFSGSPTRFGAEPNTQASPVDLALPGVLPVLNKGAVERAI 60

Query: 61  QFGLAIGATIAPRSIFARKNYFYPDLPKGYQISQFEIPVVQGGTMSFAVEKEGKTEIKTI 120
           QFGLAIGATIAPRSIFARKNYFYPDLPKGYQISQFEIPVVQGGTMSFAVEK+GKTEIKTI
Sbjct: 61  QFGLAIGATIAPRSIFARKNYFYPDLPKGYQISQFEIPVVQGGTMSFAVEKDGKTEIKTI 120

Query: 121 NLTRAHLEEDAGKSLHEDYQGMTGIDLNRAGTPLLEIVTEPEMRSAAEAVGYAKALHSLV 180
           NLTRAHLEEDAGKSLHEDYQGMTGIDLNRAGTPLLEIVTEPEMRSAAEAVGYAKALHSLV
Sbjct: 121 NLTRAHLEEDAGKSLHEDYQGMTGIDLNRAGTPLLEIVTEPEMRSAAEAVGYAKALHSLV 180

Query: 181 MWLGICDGNMQEGSFRCDANVSVRPVGQEKFGTRCEIKNLNSFRFLEEAINYEVRRQIEL 240
           MWLGICDGNMQEGSFRCDANVSVRPVGQEKFGTRCEIKNLNSFRFLEEAINYEVRRQIEL
Sbjct: 181 MWLGICDGNMQEGSFRCDANVSVRPVGQEKFGTRCEIKNLNSFRFLEEAINYEVRRQIEL 240

Query: 241 IEDGGTVVQETRLYDPDKKETRSMRSKEDAQDYRYFPDPDLPPLAISQEWIERVKATMPE 300
           IEDGGTVVQETRLYDPDKKETRSMRSKEDAQDYRYFPDPDLPPLAISQEWIERVKATMPE
Sbjct: 241 IEDGGTVVQETRLYDPDKKETRSMRSKEDAQDYRYFPDPDLPPLAISQEWIERVKATMPE 300

Query: 301 LPAAMRERFVADYALPEYDAMVLTQSKGMASYFEAVVAAAGKEQAKPAANWLMGDVASTL 360
           LPAAMRERFVA+YALPEYDAMVLTQSKGMASYFEAVVAAAGKEQAKPAANWLMGDVASTL
Sbjct: 301 LPAAMRERFVAEYALPEYDAMVLTQSKGMASYFEAVVAAAGKEQAKPAANWLMGDVASTL 360

Query: 361 NREDTDIADAPVKAAQLALLLKRIADGTISNKIAKEVFASMWEAKSDKDSLADDIIEAKG 420
           NREDTDIADAPVKAAQLALLLKRIADGTISNKIAKEVFA MWEA+SDKDSLADDIIEAKG
Sbjct: 361 NREDTDIADAPVKAAQLALLLKRIADGTISNKIAKEVFAGMWEARSDKDSLADDIIEAKG 420

Query: 421 LKQISDSGALEAIVDQVLAANEKSVAEFRAGKEQAINALIGQAMKATRGKANPAQLTELL 480
           LKQISDSGALEAIVDQVLAANEKSVAEFRAGKEQAINALIGQAMKATRGKANPAQLTELL
Sbjct: 421 LKQISDSGALEAIVDQVLAANEKSVAEFRAGKEQAINALIGQAMKATRGKANPAQLTELL 480

Query: 481 RKKLA 485
           RKKL+
Sbjct: 481 RKKLS 485


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.131    0.368 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,455,515
Number of extensions: 58536
Number of successful extensions: 180
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 180
Number of HSP's successfully gapped: 1
Length of query: 486
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 397
Effective length of database: 1,198,455
Effective search space: 475786635
Effective search space used: 475786635
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 132 (55.5 bits)