BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4540.p
         (307 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313940|ref|YP_003778032.1| transcription factor jumonji, J...   523   e-149

>gi|300313940|ref|YP_003778032.1| transcription factor jumonji, JmjC
           protein [Herbaspirillum seropedicae SmR1]
          Length = 296

 Score =  523 bits (1346), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 253/295 (85%), Positives = 270/295 (91%), Gaps = 1/295 (0%)

Query: 13  EPAHSAARALPPRPDFIGLSAEEVAARKAARDLRDAQVRGVASVAEMRQAIREASAVLPT 72
           +P H A R LPPRPD   LS E+ AARK ARD RDA++RGVASVAEMRQAIR ASA LP 
Sbjct: 3   QPDHPA-RPLPPRPDLAKLSQEQAAARKLARDQRDARIRGVASVAEMRQAIRAASAGLPA 61

Query: 73  VREIVRIGPQKTAAFRERARAGLPFIMTGMASRWPLAAMSMEDLRKHFGQLPVRARVGDY 132
           +  I R GP KTAAFR+RA AGLPF+M+GMASRWPLAAM++ DLR+HFGQLPVRARVGDY
Sbjct: 62  LAAIPRTGPLKTAAFRQRAAAGLPFLMSGMASRWPLAAMTLPDLRQHFGQLPVRARVGDY 121

Query: 133 INTAFAPDRAMQDMTLVDYLERAMADESGLPPYLGNLELRALNALCHWPNFFEKMGPPRF 192
           INTAFAPDRAMQDMTL+DYLERA ADESGLPPYLGNLELR LN LCHWPNFF+KMGPPRF
Sbjct: 122 INTAFAPDRAMQDMTLLDYLERAAADESGLPPYLGNLELRELNRLCHWPNFFDKMGPPRF 181

Query: 193 WIGPAGCITPLHCDYDDNVFAQVWGKKRVWLAPPHHDQYLYPKEANAILFGSPFDPDHPD 252
           WIGPAGCITPLHCDYDDNVFAQVWG KRVWLAPPHHDQYLYPKEANAILFGSPFDPDHPD
Sbjct: 182 WIGPAGCITPLHCDYDDNVFAQVWGSKRVWLAPPHHDQYLYPKEANAILFGSPFDPDHPD 241

Query: 253 LERYPLARQAALVCCDVQPGEMLYIPAGWYHQVSSLSFSLSSNRWARGRPLVLAA 307
           LER+PLARQAALVCC+VQPGEMLYIPAGWYHQVSSL+FSLSSNRWARGRPLVL+A
Sbjct: 242 LERFPLARQAALVCCEVQPGEMLYIPAGWYHQVSSLTFSLSSNRWARGRPLVLSA 296


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.137    0.439 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,009,200
Number of extensions: 41191
Number of successful extensions: 122
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 122
Number of HSP's successfully gapped: 1
Length of query: 307
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 222
Effective length of database: 1,217,395
Effective search space: 270261690
Effective search space used: 270261690
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 130 (54.7 bits)