BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4538.p (534 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313938|ref|YP_003778030.1| methyl-accepting chemotaxis tra... 848 0.0 gi|300312336|ref|YP_003776428.1| methyl-accepting chemotaxis tra... 507 e-144 gi|300310594|ref|YP_003774686.1| methyl-accepting chemotaxis pro... 449 e-127 gi|300310693|ref|YP_003774785.1| methyl-accepting chemotaxis pro... 434 e-122 gi|300310668|ref|YP_003774760.1| methyl-accepting chemotaxis tra... 433 e-122 >gi|300313938|ref|YP_003778030.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 533 Score = 848 bits (2192), Expect = 0.0, Method: Compositional matrix adjust. Identities = 442/536 (82%), Positives = 479/536 (89%), Gaps = 5/536 (0%) Query: 1 MKNLKIGARLTIGFIALLMLMIVMVGLGAWRLGSIGDATDAMIQVALKKERDAVQWHAAI 60 MKNLKIG RL IGFIALLMLM VMV LG WRLGSIGDATD M ++ALKKERDAVQWHAAI Sbjct: 1 MKNLKIGVRLAIGFIALLMLMAVMVALGVWRLGSIGDATDDMTRIALKKERDAVQWHAAI 60 Query: 61 KENGVRTFAVMKSDDPAVQQYFQKQIDAQSAKVSQLQKQVEAAITTPEEKQLFEHVGKLR 120 KENGVRTFAVMKSDD A Q YFQKQIDAQSA++SQLQK+VEAAIT EEK+LF+ VGKLR Sbjct: 61 KENGVRTFAVMKSDDDAFQAYFQKQIDAQSARISQLQKEVEAAITDAEEKRLFDEVGKLR 120 Query: 121 TTYRETRQNIFDIKKAGDPTRAREMTDTILVKLMDDYANSVLRYAEFQKKVIDETAADIN 180 YR TRQ+IFD+K AGD RAREMTDT LVK+MDDYA+ VLRYA+FQK+VID+TAA IN Sbjct: 121 AAYRATRQSIFDVKTAGDDARAREMTDTTLVKMMDDYADGVLRYADFQKQVIDQTAAAIN 180 Query: 181 HNYRSGRSMLVILGACELVLGALLAWLLTRSITAPLNQALAIAQSVAAGDLSSRIDSDAR 240 +YRSGRSML+ LGA E+VLGA LAWLLTRSIT PLNQA+ IA++VAAGDL+SRIDS +R Sbjct: 181 RDYRSGRSMLLALGAIEIVLGAALAWLLTRSITRPLNQAVTIAETVAAGDLTSRIDSSSR 240 Query: 241 DETGQLLTALKSMNDNLQDIVGRVRVGTESINATSREIATGNLDLSARTEQQAGSLEETA 300 DETG+LL ALK+MN NL DIVGRVR+GTE+IN SREIATGNLDLSARTE QAGSLEETA Sbjct: 241 DETGKLLAALKTMNGNLLDIVGRVRMGTETINTASREIATGNLDLSARTEAQAGSLEETA 300 Query: 301 SVMEQLTSTVKQNADNARQANQLAASASQVASQGGAVVDQVVATMSQIHASSEKIADIIG 360 S MEQLTSTVKQNADNARQAN+LAASASQVA+QGGAVVDQVVATM IHASS+KIADIIG Sbjct: 301 SAMEQLTSTVKQNADNARQANELAASASQVATQGGAVVDQVVATMGAIHASSQKIADIIG 360 Query: 361 VIDSIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKQLIDESVA 420 VID IAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKQLID+SV Sbjct: 361 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKQLIDDSVE 420 Query: 421 KVGDGSRLVAQAGDTMHEVVHSVARVTEIVGEITRASQEQSDGIGQVNLAIAHIDEATQQ 480 KV DGSRLVA+AGDTM EVV SVARVT +V EIT ASQEQSDGI QVNLAI HIDE TQQ Sbjct: 421 KVDDGSRLVARAGDTMQEVVQSVARVTAVVREITLASQEQSDGIEQVNLAITHIDETTQQ 480 Query: 481 NAALVEEAAAAARSMQDQAASLTEAVSVFRL--DTRVVATPPANLQRGTSPSTVVR 534 NAALVE+AAAAARSMQDQAASLT+AVSVFRL D +V+A +QRGTSPSTVVR Sbjct: 481 NAALVEQAAAAARSMQDQAASLTDAVSVFRLEDDAQVLAVA---VQRGTSPSTVVR 533 >gi|300312336|ref|YP_003776428.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 536 Score = 507 bits (1305), Expect = e-144, Method: Compositional matrix adjust. Identities = 296/531 (55%), Positives = 370/531 (69%), Gaps = 3/531 (0%) Query: 3 NLKIGARLTIGFIALLMLMIVMVGLGAWRLGSIGDATDAMIQVALKKERDAVQWHAAIKE 62 N+ IG RLT+GF +L I++ G+G WRL + AT M+ LK ER W+ + Sbjct: 6 NMNIGRRLTLGFALILTFSIIIAGIGLWRLDHVAQATREMMAEPLKTERLMADWYTNLVA 65 Query: 63 NGVRTFAVMKSDDPAVQQYFQKQIDAQSAKVSQLQKQVEAAITTPEEKQLFEHVGKLRTT 122 RT A+ KS DPA+ YF ++ A S + QKQVEA ++TPEEK LF+ +G+LR Sbjct: 66 GIRRTIAIAKSSDPALGPYFAAEVAASSKSSGEYQKQVEALLSTPEEKALFQKIGELRKL 125 Query: 123 YRETRQNIFDIKKAGDPTRAREMTDTILVKLMDDYANSVLRYAEFQKKVIDETAADINHN 182 Y +R I K AG+ A + D + V Y +++ + +FQ+K +D+TA +I+ Sbjct: 126 YLSSRDEINKAKAAGNTEEAMRILDQVFVPNATAYQDTMRKLVDFQRKEMDDTAREIDAI 185 Query: 183 YRSGRSMLVILGACELVLGALLAWLLTRSITAPLNQALAIAQSVAAGDLSSRIDSDARDE 242 R+++++L L+LG + A LT IT PL++A+ +++ VA GDLSS I +RDE Sbjct: 186 AAKSRTLILVLEGLILLLGIVFARYLTLGITKPLHRAVDVSRCVAEGDLSSEIAVTSRDE 245 Query: 243 TGQLLTALKSMNDNLQDIVGRVRVGTESINATSREIATGNLDLSARTEQQAGSLEETASV 302 TGQLL +LK MN +L+ IV VR GT++I+ S EIA GNLDLS+RTEQQA SL ETAS Sbjct: 246 TGQLLQSLKDMNQSLRGIVSNVRSGTDTISTASSEIAAGNLDLSSRTEQQASSLAETASA 305 Query: 303 MEQLTSTVKQNADNARQANQLAASASQVASQGGAVVDQVVATMSQIHASSEKIADIIGVI 362 ME+L STV+QNADNARQA+QLA SAS VA QGG VV QVV TM I+ASS KI DII VI Sbjct: 306 MEELISTVRQNADNARQASQLANSASAVAEQGGGVVSQVVDTMGAINASSRKIVDIISVI 365 Query: 363 DSIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKQLIDESVAKV 422 D IAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSASAAKEIK+LI++SV KV Sbjct: 366 DGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEIKELINDSVGKV 425 Query: 423 GDGSRLVAQAGDTMHEVVHSVARVTEIVGEITRASQEQSDGIGQVNLAIAHIDEATQQNA 482 DGSRLV QAG+TM EVV SV RVT+IV EI+ AS EQ+ GI Q+NLAI +D+ TQQNA Sbjct: 426 DDGSRLVEQAGNTMQEVVSSVRRVTDIVAEISAASTEQTHGIEQINLAITQMDQVTQQNA 485 Query: 483 ALVEEAAAAARSMQDQAASLTEAVSVFRLDTRVVATPPANLQRGTSPSTVV 533 ALVEEAAAAA SMQ QA L + VSVFRL R P + +PS+ V Sbjct: 486 ALVEEAAAAAASMQTQAGRLMQMVSVFRLSER---EPLVRREIDVTPSSPV 533 >gi|300310594|ref|YP_003774686.1| methyl-accepting chemotaxis protein I [Herbaspirillum seropedicae SmR1] Length = 541 Score = 449 bits (1155), Expect = e-127, Method: Compositional matrix adjust. Identities = 291/512 (56%), Positives = 354/512 (69%), Gaps = 3/512 (0%) Query: 3 NLKIGARLTIGFIALLMLMIVMVGLGAWRLGSIGDATDAMIQVALKKERDAVQWHAAIKE 62 N+KIG RL +GF +L V+V L WRL I ATD M+ L KER W+ I Sbjct: 6 NMKIGRRLALGFAVILAAASVVVALSIWRLQGIAAATDEMMHEPLTKERLVSDWYRTIHT 65 Query: 63 NGVRTFAVMKSDDPAVQQYFQKQIDAQSAKVSQLQKQVEAAITTPEEKQLFEHVGKLRTT 122 + RT A+ KS DP++ +F A S ++ QK +EA I + +EK +F +G++R Sbjct: 66 SVRRTTAIAKSSDPSLAAFFADDAAAASRMSTEQQKAIEALIESDQEKAVFTKLGEVRKD 125 Query: 123 YRETRQNIFDIKKAGDPTRAREMTDTILVKLMDDYANSVLRYAEFQKKVIDETAADINHN 182 Y + R I K G A ++ Y + + + Q+ ID+ AA I Sbjct: 126 YIKYRDAISKAKAEGRTEEAAQILAGPFDVAGKGYLDLLQQLLTLQRANIDQVAAHIQTV 185 Query: 183 YRSGRSMLVILGACELVLGALLAWLLTRSITAPLNQALAIAQSVAAGDLSSRIDSD--AR 240 YR R++++ L ++VLG L A L IT PL QA+ +A++VAAGDL+ RID AR Sbjct: 186 YRESRNLMLALAFLQVVLGWLFARTLALGITRPLEQAVEVAEAVAAGDLTHRIDERLAAR 245 Query: 241 -DETGQLLTALKSMNDNLQDIVGRVRVGTESINATSREIATGNLDLSARTEQQAGSLEET 299 DETG+L+ AL +M NL IVG+VR GT++I S+EIATGNLDLSARTE+QAG+LEET Sbjct: 246 GDETGKLMHALHAMTGNLARIVGQVRGGTDAIATASKEIATGNLDLSARTERQAGALEET 305 Query: 300 ASVMEQLTSTVKQNADNARQANQLAASASQVASQGGAVVDQVVATMSQIHASSEKIADII 359 AS ME+LTSTV QNADNARQANQLAASAS VA QGG VV QV++TM I+ SS KI DII Sbjct: 306 ASAMEELTSTVSQNADNARQANQLAASASSVAQQGGEVVSQVISTMGSINESSRKIVDII 365 Query: 360 GVIDSIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKQLIDESV 419 VID IAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIK LID+SV Sbjct: 366 SVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKALIDDSV 425 Query: 420 AKVGDGSRLVAQAGDTMHEVVHSVARVTEIVGEITRASQEQSDGIGQVNLAIAHIDEATQ 479 AKVG GS LV +AG TM EVV SV +V +IV EI+ AS EQSDGI QVNLAI +D+ TQ Sbjct: 426 AKVGSGSELVTRAGSTMDEVVASVRQVADIVSEISAASSEQSDGISQVNLAITDMDQTTQ 485 Query: 480 QNAALVEEAAAAARSMQDQAASLTEAVSVFRL 511 QNAALVEEAAAAA +MQ+QAA L+E VS F+L Sbjct: 486 QNAALVEEAAAAAEAMQEQAARLSEVVSQFKL 517 >gi|300310693|ref|YP_003774785.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 576 Score = 434 bits (1115), Expect = e-122, Method: Compositional matrix adjust. Identities = 273/515 (53%), Positives = 358/515 (69%), Gaps = 8/515 (1%) Query: 1 MKNLKIGARLTIGFIALLMLMIVMVGLGAWRLGSIGDATDAMIQVALKKERDAVQWHAAI 60 + ++KI RL F AL+++M V+ G+G L + DATD ++ K Q + Sbjct: 4 ISDMKISVRLGACFAALIVVMCVIAGVGVKNLLMVSDATDEIVNDRYVKVALGTQITDKV 63 Query: 61 KENGVRTF--AVMKSDDPAVQQYFQKQIDAQSAKVSQLQKQVEAAITTPEEKQLFEHVGK 118 G R+ A+M + +P Q+ + ++D +++VS+ ++E TP +L + + Sbjct: 64 N-TGARSLRNAIM-ARNPEEQKKYLDRMDTYTSQVSEHLAEMEKRTNTPRGSELLAALKQ 121 Query: 119 LRTTYRETRQNIFDI--KKAGDPTRAREMTDTILVKLMDDYANSVLRYAEFQKKVIDETA 176 R Y + R + D+ ++ D A TI V+ D Y +V FQ ++D++A Sbjct: 122 ARADYSKERIKVVDLIHQQKRDEATAHLFDKTIPVQ--DKYFAAVKEMVSFQSSLMDKSA 179 Query: 177 ADINHNYRSGRSMLVILGACELVLGALLAWLLTRSITAPLNQALAIAQSVAAGDLSSRID 236 + S +++++L ++L AL A L+TRSIT PLN+A+ +A +VAAGDL+ +I+ Sbjct: 180 ERASAASSSAINIMLVLSGVAVLLSALCAMLITRSITRPLNEAVQVATAVAAGDLTVQIE 239 Query: 237 SDARDETGQLLTALKSMNDNLQDIVGRVRVGTESINATSREIATGNLDLSARTEQQAGSL 296 + ++DETG LL ALKSMNDNL IV VR GT++IN SREIATGNLDLS+RTEQQAG+L Sbjct: 240 ATSKDETGALLGALKSMNDNLHRIVAEVRAGTDTINTASREIATGNLDLSSRTEQQAGAL 299 Query: 297 EETASVMEQLTSTVKQNADNARQANQLAASASQVASQGGAVVDQVVATMSQIHASSEKIA 356 EETAS ME+LTSTV+QNADNARQAN LA +ASQVA QGG+VV +VV TM QI+ +S KI Sbjct: 300 EETASAMEELTSTVRQNADNARQANTLAETASQVAIQGGSVVGEVVQTMGQINDASRKIV 359 Query: 357 DIIGVIDSIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKQLID 416 DII VID IAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSA+AAKEIK LID Sbjct: 360 DIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAAAAKEIKSLID 419 Query: 417 ESVAKVGDGSRLVAQAGDTMHEVVHSVARVTEIVGEITRASQEQSDGIGQVNLAIAHIDE 476 SV +V GSRLV QAG TM EVV SV RVT++V EIT AS EQSDGI Q+N AI +DE Sbjct: 420 ASVERVESGSRLVGQAGATMEEVVASVKRVTDVVAEITAASGEQSDGIEQINQAIVQMDE 479 Query: 477 ATQQNAALVEEAAAAARSMQDQAASLTEAVSVFRL 511 TQQNAALVE+AAAAA+S+Q+Q+ L++ V +FRL Sbjct: 480 VTQQNAALVEQAAAAAQSLQEQSGRLSDTVGIFRL 514 >gi|300310668|ref|YP_003774760.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 515 Score = 433 bits (1114), Expect = e-122, Method: Compositional matrix adjust. Identities = 259/511 (50%), Positives = 352/511 (68%) Query: 1 MKNLKIGARLTIGFIALLMLMIVMVGLGAWRLGSIGDATDAMIQVALKKERDAVQWHAAI 60 +K+++IG+RL GF +L+ +V+ +G WRL ++ T M+ V LK ER QW+ + Sbjct: 2 IKDIRIGSRLGAGFAVVLVFSMVVAAVGIWRLKTVAVQTQQMMDVPLKTERLVSQWNTLL 61 Query: 61 KENGVRTFAVMKSDDPAVQQYFQKQIDAQSAKVSQLQKQVEAAITTPEEKQLFEHVGKLR 120 RT V+KS DP ++ + K+ A S + +Q K VE + + EEK++F + R Sbjct: 62 LIAIQRTTTVVKSHDPELEAFLAKEAAASSKESAQTLKDVEQLLASEEEKKMFAAINVAR 121 Query: 121 TTYRETRQNIFDIKKAGDPTRAREMTDTILVKLMDDYANSVLRYAEFQKKVIDETAADIN 180 + R I+ KK GD + E+ V + +++ +F++ ID+ +A I Sbjct: 122 KQFLTIRDQIYAAKKQGDAAQVEELYQKQYVGIAKSTQDAMRALLDFERARIDQISAQIQ 181 Query: 181 HNYRSGRSMLVILGACELVLGALLAWLLTRSITAPLNQALAIAQSVAAGDLSSRIDSDAR 240 + S + +++L L+ G A LLTRSIT P++ ALAI+Q VAAGDL+SR + R Sbjct: 182 QDASSSQHQIMLLEVVILLCGIAFAVLLTRSITRPVHVALAISQRVAAGDLTSRAQAMGR 241 Query: 241 DETGQLLTALKSMNDNLQDIVGRVRVGTESINATSREIATGNLDLSARTEQQAGSLEETA 300 DE GQL+ +L+ M++ L +V VR G +SI S EIA GNLDLSARTE+QAG+LE+TA Sbjct: 242 DELGQLVASLQGMSERLHGVVSTVRHGADSIAMASGEIANGNLDLSARTEEQAGALEQTA 301 Query: 301 SVMEQLTSTVKQNADNARQANQLAASASQVASQGGAVVDQVVATMSQIHASSEKIADIIG 360 + +E+LTS+V+ N+DNA QAN+L ++A+ VA QGGAV+DQ+++TM+ I+ SS KI DIIG Sbjct: 302 ASIEELTSSVRTNSDNAHQANELVSTAASVAGQGGAVMDQLISTMATINDSSRKIVDIIG 361 Query: 361 VIDSIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKQLIDESVA 420 VID IAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSA+AAKEIKQLID+SV Sbjct: 362 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRALAQRSAAAAKEIKQLIDDSVG 421 Query: 421 KVGDGSRLVAQAGDTMHEVVHSVARVTEIVGEITRASQEQSDGIGQVNLAIAHIDEATQQ 480 KV GS LV QAG TM EVV SV +VGEI+ AS++Q++GI QVN A+ +D TQQ Sbjct: 422 KVSAGSTLVEQAGKTMQEVVGSVQGAHTLVGEISTASRQQAEGIHQVNQAVGQMDGVTQQ 481 Query: 481 NAALVEEAAAAARSMQDQAASLTEAVSVFRL 511 NAALVE+AAAAA+S++DQAA L AV+ F L Sbjct: 482 NAALVEQAAAAAKSLEDQAAQLKRAVAFFSL 512 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.314 0.126 0.329 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,134,388 Number of extensions: 35912 Number of successful extensions: 557 Number of sequences better than 1.0e-08: 70 Number of HSP's gapped: 301 Number of HSP's successfully gapped: 70 Length of query: 534 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 444 Effective length of database: 1,193,720 Effective search space: 530011680 Effective search space used: 530011680 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 133 (55.8 bits)