BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4537.p
         (504 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313937|ref|YP_003778029.1| hypothetical protein Hsero_4655...   867   0.0  

>gi|300313937|ref|YP_003778029.1| hypothetical protein Hsero_4655
           [Herbaspirillum seropedicae SmR1]
          Length = 503

 Score =  867 bits (2240), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 439/501 (87%), Positives = 466/501 (93%)

Query: 1   MKPKIVIARMNHETNTFSPIATPLDAFAPQWDHAAYLDQKGARTAMGAFLDMAERIGAEI 60
           MKP  VIARMNHETNTFSPI TPL+AFAPQWD AAY DQKGARTAMGAFL++AE+ GA+I
Sbjct: 1   MKPTFVIARMNHETNTFSPIPTPLEAFAPQWDDAAYRDQKGARTAMGAFLELAEQAGAQI 60

Query: 61  VTPVAAWANPSAAVAADAYTLMCAAIVRAVEAGCDAILLDLHGAMVAENADDGEGQLLER 120
           VTP+AAWANPSAAVAADAYTLMC AIVRA+E GCDAILLDLHGAMVAENA+DGEG LLER
Sbjct: 61  VTPLAAWANPSAAVAADAYTLMCDAIVRAIEQGCDAILLDLHGAMVAENAEDGEGALLER 120

Query: 121 IRRIAPHTPLAVALDLHGNVTQKMVANADIIVSFKTYPHIDMAETGEHAARLLLALLQKK 180
           IRR+APHTP+AVALDLHGNVTQKMV +AD+IVSFKTYPHIDM ETGEHA RLLLA L+ +
Sbjct: 121 IRRVAPHTPMAVALDLHGNVTQKMVTHADVIVSFKTYPHIDMFETGEHAGRLLLARLRGR 180

Query: 181 SQPTMAWRQVPVLSATLTSNTSASAMQRAVEAAKAAEQEAGVLAVSVLAGFPLSDFRDAG 240
           SQP MAWRQVP+LSATLTSNTSASAMQRAVEAAKAAEQE GVLAVSVLAGFPLSDFRDAG
Sbjct: 181 SQPRMAWRQVPMLSATLTSNTSASAMQRAVEAAKAAEQEPGVLAVSVLAGFPLSDFRDAG 240

Query: 241 MSVVVVTEHDAALADAVAARIARQIWDERADFVYDSLPLAQSLAQARQLSLAPGQGPVLL 300
           MSVVVVTE DAA ADAVAARIARQIW ERADFVY S PLAQSLAQARQL   PGQGP+LL
Sbjct: 241 MSVVVVTEDDAAQADAVAARIARQIWAERADFVYHSPPLAQSLAQARQLRQGPGQGPMLL 300

Query: 301 LDHSDNVMSGGTCNTMDVLEAALAAGLEGIAVGPISDPEAVAQLIQAGVGATVTLAVGNK 360
           LDHSDNVMSGGTCNTMDVLEAAL  GLEGIAVGP+SDPEAVAQL++AG+GATVTLAVGNK
Sbjct: 301 LDHSDNVMSGGTCNTMDVLEAALQEGLEGIAVGPVSDPEAVAQLVEAGLGATVTLAVGNK 360

Query: 361 VALAAQGIVKVPPVYTGKVVAISDGRFTVSGPIYTGSTLQMGRSVLFDIGAARIVVTEER 420
           V LAAQGI K PPVYTGKVVAI+DGRFTV+GPIYTGS LQMGRSVLFDIGAARIV+TEER
Sbjct: 361 VDLAAQGITKTPPVYTGKVVAITDGRFTVTGPIYTGSHLQMGRSVLFDIGAARIVITEER 420

Query: 421 VEPYDLGVFTSLGLDPAQQAFLILKSRMYCRPVFVPISRALVECDSDSGGPTSANFRLFP 480
           VEPYDLGVFTSLGLDPAQQ+FLILKSRMYCRPVF PISRALVECDSDSGGPTSANFRLFP
Sbjct: 421 VEPYDLGVFTSLGLDPAQQSFLILKSRMYCRPVFAPISRALVECDSDSGGPTSANFRLFP 480

Query: 481 IKQVRRPVYPLDAAMEWDAAA 501
           IK+VRRP+YPLDA M W+  A
Sbjct: 481 IKKVRRPIYPLDADMRWEGGA 501


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.132    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,316,490
Number of extensions: 47118
Number of successful extensions: 181
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 181
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 415
Effective length of database: 1,198,455
Effective search space: 497358825
Effective search space used: 497358825
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 133 (55.8 bits)