BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4535.p (234 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313935|ref|YP_003778027.1| branched-chain amino acid ABC t... 455 e-129 gi|300312951|ref|YP_003777043.1| amino acid ABC transporter ATPa... 235 2e-63 gi|300314072|ref|YP_003778164.1| amino acid ABC transporter ATPa... 216 2e-57 gi|300310995|ref|YP_003775087.1| branched-chain amino acid ABC t... 210 7e-56 gi|300310524|ref|YP_003774616.1| branched-chain amino acid ABC t... 202 2e-53 >gi|300313935|ref|YP_003778027.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 234 Score = 455 bits (1170), Expect = e-129, Method: Compositional matrix adjust. Identities = 223/234 (95%), Positives = 231/234 (98%) Query: 1 MILQVQDVHGYYGKSHILQGVSLQVDAGEVVTLLGRNGAGKTTTLKSIVGVVPPAQGQVL 60 MILQV+DVHGYYGKSHILQGVSLQVDAGEVVTLLGRNGAGKTTTLKSIVGVVPP QG+VL Sbjct: 1 MILQVEDVHGYYGKSHILQGVSLQVDAGEVVTLLGRNGAGKTTTLKSIVGVVPPVQGRVL 60 Query: 61 FEGKVISGLPSYQIAARGVCLVPEHRGIFKLLTVEENLTMAARKESAWGLEEIYAIFPRL 120 FEG++ISGLPSY+IAARGVCLVPEHRGIFKLLTVEENLTMAARKESAWGLEEIYAIFPRL Sbjct: 61 FEGQLISGLPSYKIAARGVCLVPEHRGIFKLLTVEENLTMAARKESAWGLEEIYAIFPRL 120 Query: 121 KERRKNGGGQLSGGEQQMLAIARALMTHPHVLMLDEPVEGLAPVIVDEIVAQIKQIKSTG 180 KERRKNGGGQLSGGEQQMLAIARALMTHP VLMLDEPVEGLAPVIVDEIVAQI+QIK+TG Sbjct: 121 KERRKNGGGQLSGGEQQMLAIARALMTHPRVLMLDEPVEGLAPVIVDEIVAQIRQIKATG 180 Query: 181 MSIILVEQNLEVCTQLADRHYIVEQGRIVYSGSNAQFLADEGVKDRYLGVNLAA 234 MSIILVEQNLEVCTQLADRHYIVEQGRIVY GSNA+FLADEGVKDRYLGVNLAA Sbjct: 181 MSIILVEQNLEVCTQLADRHYIVEQGRIVYHGSNAEFLADEGVKDRYLGVNLAA 234 >gi|300312951|ref|YP_003777043.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 236 Score = 235 bits (600), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 120/233 (51%), Positives = 168/233 (72%), Gaps = 4/233 (1%) Query: 2 ILQVQDVHGYYGKSHILQGVSLQVDAGEVVTLLGRNGAGKTTTLKSIVGVVPPAQGQVLF 61 +L+V+ + G YG S +L G+ +QV GEVVTLLGRNG GKTTTL++I+G+ P G V F Sbjct: 4 LLEVEGLTGGYGASQVLFGIDMQVREGEVVTLLGRNGMGKTTTLRTILGLNRPTGGVVRF 63 Query: 62 EGKVISGLPSYQIAARGVCLVPEHRGIFKLLTVEENLT-MAARK---ESAWGLEEIYAIF 117 G+ I + IA RG+ +VPE R IFK L+VEENL+ AAR+ ++ W LE+IY F Sbjct: 64 RGEAIHSASADAIARRGMAIVPEGRQIFKNLSVEENLSAFAARRNGRDNPWTLEKIYQQF 123 Query: 118 PRLKERRKNGGGQLSGGEQQMLAIARALMTHPHVLMLDEPVEGLAPVIVDEIVAQIKQIK 177 PRLKERR NGGGQLSGGEQQMLAI RALMT+PH+L+LDE EGLAP++ +EI + +K ++ Sbjct: 124 PRLKERRHNGGGQLSGGEQQMLAIGRALMTNPHLLILDEATEGLAPLVREEIWSCLKALR 183 Query: 178 STGMSIILVEQNLEVCTQLADRHYIVEQGRIVYSGSNAQFLADEGVKDRYLGV 230 G++II++++ ++ AD+H I+E+G++V+ G +AQ + D+YL V Sbjct: 184 EYGLTIIVIDKYIKRLIGFADQHTILEKGKVVWQGDSAQLSVQTELWDQYLSV 236 >gi|300314072|ref|YP_003778164.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 242 Score = 216 bits (549), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 111/233 (47%), Positives = 154/233 (66%), Gaps = 3/233 (1%) Query: 1 MILQVQDVHGYYGKSHILQGVSLQVDAGEVVTLLGRNGAGKTTTLKSIVGVVPPAQGQVL 60 ++LQ+ D+ +YG+SHIL V+L V GEVVTLLGRNGAG+TTTL+SI+G+V +G + Sbjct: 10 LVLQISDLQSWYGESHILHNVNLNVHQGEVVTLLGRNGAGRTTTLRSIMGLVGTRKGSIK 69 Query: 61 FEGKVISGLPSYQIAARGVCLVPEHRGIFKLLTVEENLTM---AARKESAWGLEEIYAIF 117 G+ L +++IA GV PE RGIF L+ EENL + ++ + ++EIY +F Sbjct: 70 INGQETINLATHKIAHHGVGYCPEERGIFSSLSAEENLMLPPFVSKTDKGMSIDEIYEMF 129 Query: 118 PRLKERRKNGGGQLSGGEQQMLAIARALMTHPHVLMLDEPVEGLAPVIVDEIVAQIKQIK 177 P LKERR + G +LSGGEQQMLA+AR L T +L+LDE EGLAPVIV + I +K Sbjct: 130 PNLKERRNSQGTRLSGGEQQMLAVARILRTGARLLLLDEISEGLAPVIVQALARMITTLK 189 Query: 178 STGMSIILVEQNLEVCTQLADRHYIVEQGRIVYSGSNAQFLADEGVKDRYLGV 230 + G +I++VEQN LADR Y++E G+IV S +++Q A + LGV Sbjct: 190 AKGYTIVMVEQNFRFAAPLADRFYVMEHGQIVESFASSQLEAKMQTLNELLGV 242 >gi|300310995|ref|YP_003775087.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 235 Score = 210 bits (535), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 109/233 (46%), Positives = 152/233 (65%), Gaps = 4/233 (1%) Query: 1 MILQVQDVHGYYGKSHILQGVSLQVDAGEVVTLLGRNGAGKTTTLKSIVGVVPPAQGQVL 60 M+LQ VH +YG L GVSL V+ GE+VTL+G NGAGKTT L ++ G + G+V+ Sbjct: 1 MMLQFDKVHTHYGAIEALHGVSLNVEKGEIVTLIGANGAGKTTLLMTLCGRPRASSGRVI 60 Query: 61 FEGKVISGLPSYQIAARGVCLVPEHRGIFKLLTVEENLTMAARKES----AWGLEEIYAI 116 FEG+ I+ L +++I RG+ + PE R +F LTV ENL M A S G+E ++ + Sbjct: 61 FEGQDITQLQTHEIMRRGLAISPEGRRVFPSLTVLENLKMGAFFASNEAIEQGIEYVFGL 120 Query: 117 FPRLKERRKNGGGQLSGGEQQMLAIARALMTHPHVLMLDEPVEGLAPVIVDEIVAQIKQI 176 FPRLKER G +SGGEQQMLAI RALM+ P +L+LDEP GLAP+++ +I I+ I Sbjct: 121 FPRLKERAAQRAGTMSGGEQQMLAIGRALMSKPRLLLLDEPTLGLAPLVIAQIFDIIRTI 180 Query: 177 KSTGMSIILVEQNLEVCTQLADRHYIVEQGRIVYSGSNAQFLADEGVKDRYLG 229 + +G+++ LVEQN +ADR Y++E G +V S + A LA+ V+ YLG Sbjct: 181 RESGVTVFLVEQNANKALGVADRGYVLENGHVVMSDTGANLLANSDVRKAYLG 233 >gi|300310524|ref|YP_003774616.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 241 Score = 202 bits (514), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 103/235 (43%), Positives = 157/235 (66%), Gaps = 7/235 (2%) Query: 2 ILQVQDVHGYYGKSHILQGVSLQVDAGEVVTLLGRNGAGKTTTLKSIVGVVPPA--QGQV 59 IL+VQ + YG ++G+ L+V+ GE+VTL+G NGAGKTTTLK+I G +P + +G + Sbjct: 5 ILKVQQLSVAYGGIQAVKGIDLEVNEGELVTLIGANGAGKTTTLKAITGTLPASRVEGHI 64 Query: 60 LFEGKVISGLPSYQIAARGVCLVPEHRGIFKLLTVEENLTMAA-----RKESAWGLEEIY 114 + G+ + G S+++ + +VPE RG+F ++++ENL M A + + A +++ + Sbjct: 65 EYLGQPLKGKKSFELVKDKLAMVPEGRGVFTRMSIQENLLMGAYTSDDKGQIAADIDKWF 124 Query: 115 AIFPRLKERRKNGGGQLSGGEQQMLAIARALMTHPHVLMLDEPVEGLAPVIVDEIVAQIK 174 A+FPRLKER G LSGGEQQMLA+ARALM+HP +L+LDEP GL+P++V++I I+ Sbjct: 125 AVFPRLKERAAQMAGTLSGGEQQMLAMARALMSHPKLLLLDEPSMGLSPIMVEKIFEVIR 184 Query: 175 QIKSTGMSIILVEQNLEVCTQLADRHYIVEQGRIVYSGSNAQFLADEGVKDRYLG 229 + + G++I+LVEQN ++ + A R Y++E G I G Q L D VK YLG Sbjct: 185 NVSAQGITILLVEQNAKLALEAAHRGYVMESGLITMQGQAQQMLDDPRVKAAYLG 239 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.137 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 735,892 Number of extensions: 30565 Number of successful extensions: 500 Number of sequences better than 1.0e-08: 125 Number of HSP's gapped: 312 Number of HSP's successfully gapped: 141 Length of query: 234 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 152 Effective length of database: 1,231,600 Effective search space: 187203200 Effective search space used: 187203200 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 129 (54.3 bits)