BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4532.p (288 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313932|ref|YP_003778024.1| branched-chain amino acid ABC t... 509 e-145 gi|300314070|ref|YP_003778162.1| branched-chain amino acid ABC t... 195 4e-51 gi|300312954|ref|YP_003777046.1| amino acid ABC transporter perm... 157 1e-39 gi|300313286|ref|YP_003777378.1| branched-chain amino acid ABC t... 134 1e-32 gi|300310992|ref|YP_003775084.1| branched-chain aminoacid ABC tr... 132 3e-32 >gi|300313932|ref|YP_003778024.1| branched-chain amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 288 Score = 509 bits (1311), Expect = e-145, Method: Compositional matrix adjust. Identities = 280/288 (97%), Positives = 285/288 (98%) Query: 1 MNIYLLQIANGVGIGMLYFLLAVGLSIVFGLLRFVNFSHGAFFLLGAYLCFEVTDLGLSF 60 MNIYLLQIANGVGIGMLYFLLAVGLSIVFGLLRFVNFSHGAFFLLGAYLCF+VTDLGL F Sbjct: 1 MNIYLLQIANGVGIGMLYFLLAVGLSIVFGLLRFVNFSHGAFFLLGAYLCFQVTDLGLGF 60 Query: 61 WWSLLVAPLGVGLFAWVVERFVLRHVYALPHHFHILFTVGMALVIQEAVISTWGPLGNNV 120 WWSLL+APL VGLFAW+VERFVLRHVYALPHHFHILFTVGMALVIQEAVISTWGPLGNNV Sbjct: 61 WWSLLIAPLVVGLFAWIVERFVLRHVYALPHHFHILFTVGMALVIQEAVISTWGPLGNNV 120 Query: 121 SPPDLLQGVVIWGSFVYPKYRLFVIGLTAVMALLLWWVLEGTRLGSIVRAGSESTEMVSL 180 +PPDLLQGVV+WG FVYPKYRLFVIGLTAVMALLLWWVLEGTRLGSIVRAGSESTEMVSL Sbjct: 121 APPDLLQGVVMWGGFVYPKYRLFVIGLTAVMALLLWWVLEGTRLGSIVRAGSESTEMVSL 180 Query: 181 LGLNINRIFSLVFALGAATAGLAGALAAPIRGADPFMGVEALGIAFVVVVIGGLGSFWGA 240 LGLNINRIFSLVFALGAATAGLAGALAAPIRGADPFMGVEALGIAFVVVVIGGLGSFWGA Sbjct: 181 LGLNINRIFSLVFALGAATAGLAGALAAPIRGADPFMGVEALGIAFVVVVIGGLGSFWGA 240 Query: 241 LIGGILVGIVQSVMSTVWSEGAHLMIYVAMAAVMLLRPNGLLGRPGAA 288 LIGGILVGIVQSVMSTVWSEGAHLMIYVAMAAVMLLRPNGLLGRPGAA Sbjct: 241 LIGGILVGIVQSVMSTVWSEGAHLMIYVAMAAVMLLRPNGLLGRPGAA 288 >gi|300314070|ref|YP_003778162.1| branched-chain amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 294 Score = 195 bits (495), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 105/271 (38%), Positives = 173/271 (63%), Gaps = 1/271 (0%) Query: 15 GMLYFLLAVGLSIVFGLLRFVNFSHGAFFLLGAYLCFE-VTDLGLSFWWSLLVAPLGVGL 73 G Y +L++GL+++FGLL +NF+HG ++LGA+L + ++ LGL++W L+VAP+ VG Sbjct: 22 GSFYAMLSLGLAVIFGLLNVINFAHGTLYMLGAFLAWMGLSYLGLNYWVMLIVAPILVGA 81 Query: 74 FAWVVERFVLRHVYALPHHFHILFTVGMALVIQEAVISTWGPLGNNVSPPDLLQGVVIWG 133 F V+E+ +LR +Y L H + +L T G+ L+I+ S +G G S PDLLQG G Sbjct: 82 FGIVIEKTMLRWLYKLDHLYGLLLTFGITLMIEGIFRSIYGVSGQPYSVPDLLQGATNLG 141 Query: 134 SFVYPKYRLFVIGLTAVMALLLWWVLEGTRLGSIVRAGSESTEMVSLLGLNINRIFSLVF 193 V P YR +V+ + ++ W+V+E TRLG+ +RAG+E+ ++V G+N+ + +L + Sbjct: 142 FMVLPNYRAWVVVASLIVCFATWFVIEKTRLGAYLRAGTENPKLVEAFGINVPLMVTLTY 201 Query: 194 ALGAATAGLAGALAAPIRGADPFMGVEALGIAFVVVVIGGLGSFWGALIGGILVGIVQSV 253 G A A AG LAAP+ P MG + F VVVIGG+GS G++I G+++G+++ + Sbjct: 202 GFGVALAAFAGVLAAPVIQVSPLMGSNLIITVFAVVVIGGMGSILGSIITGLVLGLIEGL 261 Query: 254 MSTVWSEGAHLMIYVAMAAVMLLRPNGLLGR 284 + E + ++++ MA V+++RP GL G+ Sbjct: 262 TRVFYPELSATVVFIIMAIVLMVRPAGLFGK 292 >gi|300312954|ref|YP_003777046.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 304 Score = 157 bits (397), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 107/297 (36%), Positives = 164/297 (55%), Gaps = 17/297 (5%) Query: 2 NIYLLQIANGVGIGMLYFLLAVGLSIVFGLLRFVNFSHGAFFLLGAYLCFEVTDLGLSFW 61 N+ Q+ N + G++ FL+A GL+++FG++ FVN +HG+FF++GAY+ V SFW Sbjct: 3 NLIFEQVLNSLQFGVMLFLIASGLTLIFGVMNFVNLAHGSFFMIGAYVAAVVAGASGSFW 62 Query: 62 WSLLVAPLGVGLFAWVVERFVLRHVYALPHHFHILFTVGMALVIQEAVISTWGPLGNNVS 121 LLVA +++E V R +Y H +L T L+ + V WGP ++ Sbjct: 63 LGLLVALPATAALGFLLEWVVFRRLYQKDHMVQVLATFAFILIFNDGVRMIWGPQPLPLN 122 Query: 122 PPDLLQGVVIWGSFVYPKYRLFVIGLTAVMALLLWWVLEGTRLGSIVRAGSESTEMVSLL 181 P G V Y YRL V+ + V+A+ L++++ TR+G VRAG+ + EMV+ + Sbjct: 123 MPAAFAGPVNLFGLPYSSYRLLVMAVGVVVAIALYFLINRTRIGMWVRAGANNLEMVTAM 182 Query: 182 GLNINRIFSLVFALGAATAGLAGALAAPIRGADPFMGVEALGIAFVVVVIGGLGSFWGAL 241 G+NI +F LVF+ G A LAG + P+ MG + L +AFVVVVIGG+GS GA Sbjct: 183 GINIRLLFRLVFSFGLLLAALAGIMLGPLVAVQAGMGDDVLILAFVVVVIGGIGSVPGAA 242 Query: 242 IGGILVGIVQSV-----------------MSTVWSEGAHLMIYVAMAAVMLLRPNGL 281 IG ++VG+V ++ ++V +MIY+ M AV+ RP+GL Sbjct: 243 IGALIVGVVDTLGRSLLPQLFALFLSADAAASVGPALGSMMIYLVMIAVLFWRPSGL 299 >gi|300313286|ref|YP_003777378.1| branched-chain amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 288 Score = 134 bits (336), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 91/278 (32%), Positives = 154/278 (55%), Gaps = 1/278 (0%) Query: 10 NGVGIGMLYFLLAVGLSIVFGLLRFVNFSHGAFFLLGAYLCFEVTD-LGLSFWWSLLVAP 68 +G+ G L FL++VGLS+ G++ F+N +HGAF +LG Y+C + + +G+ F +L +A Sbjct: 11 DGIAYGSLLFLISVGLSVTMGMMNFINLAHGAFAMLGGYVCVTLLNGMGVPFLATLPLAF 70 Query: 69 LGVGLFAWVVERFVLRHVYALPHHFHILFTVGMALVIQEAVISTWGPLGNNVSPPDLLQG 128 + + V+ER + R +Y H +LF++G+ + WGP V PD L+G Sbjct: 71 IAAAIVGLVLERSLYRRLYKASHLDQVLFSIGLTFMAVAGATWQWGPTQQPVVLPDWLRG 130 Query: 129 VVIWGSFVYPKYRLFVIGLTAVMALLLWWVLEGTRLGSIVRAGSESTEMVSLLGLNINRI 188 + YR+F+IG+ ++ + L ++E TR G+ +RA ++ + LG+N++R+ Sbjct: 131 QISLLGLEVGAYRVFLIGVVVIVTVALGLLIERTRFGAQIRASVDNQVAAAGLGINVSRV 190 Query: 189 FSLVFALGAATAGLAGALAAPIRGADPFMGVEALGIAFVVVVIGGLGSFWGALIGGILVG 248 FSL FALG+ AGL G L + G DP V+ + +VV +GG G+ G L+ +++G Sbjct: 191 FSLTFALGSGLAGLGGGLGIDVLGLDPTFPVKYMVYFLLVVAVGGAGTIKGPLLAALILG 250 Query: 249 IVQSVMSTVWSEGAHLMIYVAMAAVMLLRPNGLLGRPG 286 + E +IY M +++L P GL+ R G Sbjct: 251 VFDVAGKYYVPEIGAFVIYGLMVVLLILFPAGLMRRRG 288 >gi|300310992|ref|YP_003775084.1| branched-chain aminoacid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 308 Score = 132 bits (333), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 89/295 (30%), Positives = 164/295 (55%), Gaps = 18/295 (6%) Query: 7 QIANGVGIGMLYFLLAVGLSIVFGLLRFVNFSHGAFFLLGAYL-CFEVTDLGLSFWWSL- 64 Q+ NG+ +G +Y L+A+G ++V+G++ +NF+HG +++ +Y+ +T +G+ + L Sbjct: 11 QLVNGLSLGAIYALIAIGYTMVYGIIGMINFAHGEIYMIASYVGLVTLTAIGVQSGYPLP 70 Query: 65 -------LVAPLGVGLFAWVVERFVLRHVYALPHHFHILFTVGMALVIQEAVISTWGPLG 117 +V+ L GL+ W VER R + P ++ +GM++ +Q V G Sbjct: 71 LLLGGALIVSVLVTGLYGWTVERVAYRPLRGGPRLVPLISAIGMSIFLQNYV--QIGQGA 128 Query: 118 NNVSPPDLLQGVVIWG-----SFVYPKYRLFVIGLTAVMALLLWWVLEGTRLGSIVRAGS 172 ++S P L+ G + + + P R+ ++G+T V+ + L + +R+G RA + Sbjct: 129 RDMSVPVLISGALEFQMGSDFTVTIPYSRMVIVGVTLVLMVALTLFIARSRMGRACRACA 188 Query: 173 ESTEMVSLLGLNINRIFSLVFALGAATAGLAGALAAPIRGA-DPFMGVEALGIAFVVVVI 231 E M +LLG++ N++ S F LGA A + G L A G +P++G A AF V+ Sbjct: 189 EDMGMANLLGIDTNKVISFTFVLGAMLAAVGGVLIALTIGKLNPYIGFIAGIKAFTAAVL 248 Query: 232 GGLGSFWGALIGGILVGIVQSVMS-TVWSEGAHLMIYVAMAAVMLLRPNGLLGRP 285 GG+GS GA++GG+L+G+ ++ + + SE ++ + + ++L RP GLLG+P Sbjct: 249 GGIGSIPGAMLGGVLLGLAETFAAGYLPSEYKDVVSFGLLVLILLFRPTGLLGKP 303 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.330 0.146 0.461 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 793,389 Number of extensions: 32613 Number of successful extensions: 270 Number of sequences better than 1.0e-08: 31 Number of HSP's gapped: 252 Number of HSP's successfully gapped: 32 Length of query: 288 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 204 Effective length of database: 1,222,130 Effective search space: 249314520 Effective search space used: 249314520 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 130 (54.7 bits)