BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4516.p
         (349 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313220|ref|YP_003777312.1| L-asparaginase/archaeal Glu-tRN...   174   1e-44
gi|300310776|ref|YP_003774868.1| L-asparaginase/archaeal Glu-tRN...   171   1e-43

>gi|300313220|ref|YP_003777312.1| L-asparaginase/archaeal
           Glu-tRNAGln amidotransferase subunit D protein
           [Herbaspirillum seropedicae SmR1]
          Length = 275

 Score =  174 bits (441), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 99/275 (36%), Positives = 161/275 (58%), Gaps = 10/275 (3%)

Query: 78  LPSDYMDPPRWIALQQATAAALDRPEISGVIISHGTDTLEETAWFLDLTLSSDKPVVLIG 137
           + S+ M+   W+ L +     L + ++ G++I+HGTDT+EETA+FLDL + S KPVV++G
Sbjct: 3   IASENMNNDAWLKLGKRVNTLLAQSDVDGIVITHGTDTIEETAYFLDLVVKSKKPVVIVG 62

Query: 138 AQRNASSPDFDGPRNLLNAARICVCPESRDMGVMIAMNNQINAARDVSKTHTADVETFKS 197
           A R +++   DGP NL NA  +    E+   GV++ +N+QINA R+V+KT+T+ ++TFK+
Sbjct: 63  AMRPSTAISADGPINLYNAVLLAGSKEAIGKGVLVTLNDQINAGREVTKTNTSTLDTFKT 122

Query: 198 GDFGVLGVADEDRIVFARRPLRRQYLP-----LLGGTLPRVEIIPMFGGASGDLLRAAVS 252
            + G LG     +  F R+  R+  +      +    LP+V+I+  +   +   L A V+
Sbjct: 123 PELGFLGYIQGSKPYFYRQSTRKNTVDTPFDIMNLDKLPQVDIVYGYANMNPIALNAFVA 182

Query: 253 LGTRGIVIQALGFGNVNAALYEAIREAIVQGVTVVISTRVANGRVLPSYGFDGGGATLKA 312
            G +GI+   +G G++N  +  ++ EA  +GV +V S+RV  G V  +     G A    
Sbjct: 183 AGAQGIIHAGVGDGSLNNTVVPSLTEARKKGVVIVRSSRVGQGIVARN-----GEADDDK 237

Query: 313 AGAIFADDLSAQKARILLMLGLQSTHDATQLQALF 347
              + +D L+AQKARILLML L  T D  ++Q +F
Sbjct: 238 LDFVVSDTLNAQKARILLMLALTKTTDTKEIQKMF 272


>gi|300310776|ref|YP_003774868.1| L-asparaginase/archaeal
           Glu-tRNAGln amidotransferase subunit D protein
           [Herbaspirillum seropedicae SmR1]
          Length = 356

 Score =  171 bits (432), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 102/303 (33%), Positives = 168/303 (55%), Gaps = 21/303 (6%)

Query: 55  DDLLATVPAMATIATLEVNNLFNLPSDYMDPPRWIALQQATAAALDRPEISGVIISHGTD 114
           D ++A VP ++ IA +    +F + S+  +  R I L +  +  L + ++ G++I+HGTD
Sbjct: 62  DKIIAAVPEISKIANVRGEQIFQIGSESFNDERLIKLGKRVSELLKQNDVDGIVITHGTD 121

Query: 115 TLEETAWFLDLTLSSDKPVVLIGAQRNASSPDFDGPRNLLNAARICVCPESRDMGVMIAM 174
           T+EETA+FL+L L SDKPVV++G+ R  ++   DG  NL +A  +    E+   G ++ M
Sbjct: 122 TIEETAYFLNLVLKSDKPVVVVGSMRPGTALGADGALNLYDAVLVAGSKEAAGKGTLVVM 181

Query: 175 NNQINAARDVSKTHTADVETFKSGDFGVLGVADEDRIVFARRPLR-----RQYLPLLGGT 229
           N++I++ RDV+K++T  VETF+S  +G LG   E+++ F R P R      ++      +
Sbjct: 182 NDEIHSGRDVTKSNTFKVETFRS-PYGPLGYVVENKLSFYRLPARPHTTQTEFDIDKISS 240

Query: 230 LPRVEIIPMFGGASGDLLRAAVSLGTRGIVIQALGFGNVNAALYEAIREAIVQGVTVVIS 289
           LPRV+I+  +G  S     A V+ G + I+    G G+V   +   ++E   +GV V+ +
Sbjct: 241 LPRVDIVYNYGNVSRTAYDAFVAAGAKAIIHDGTGNGSVAEQIVPVLQEVRSKGVQVIRA 300

Query: 290 TRVANGRVL-----PSYGFDGGGATLKAAGAIFADDLSAQKARILLMLGLQSTHDATQLQ 344
           +R  +G V+     P   FD           +  DD +AQKARIL  L L  T+D  +LQ
Sbjct: 301 SRTGSGVVIRNGEQPDDKFDW----------VVTDDQNAQKARILAELALTKTNDPKELQ 350

Query: 345 ALF 347
            + 
Sbjct: 351 KIM 353


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.137    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,050,426
Number of extensions: 44342
Number of successful extensions: 150
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 146
Number of HSP's successfully gapped: 2
Length of query: 349
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 263
Effective length of database: 1,212,660
Effective search space: 318929580
Effective search space used: 318929580
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)