BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4515.p (235 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313999|ref|YP_003778091.1| urea ABC transporter ATPase [He... 166 1e-42 gi|300311769|ref|YP_003775861.1| branched-chain amino acid ABC t... 164 7e-42 gi|300311566|ref|YP_003775658.1| branched-chain amino acid ABC t... 157 1e-39 gi|300311943|ref|YP_003776035.1| branched-chain amino acid ABC t... 153 1e-38 gi|300311116|ref|YP_003775208.1| branched-chain amino acid ABC t... 152 2e-38 >gi|300313999|ref|YP_003778091.1| urea ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 232 Score = 166 bits (421), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 92/234 (39%), Positives = 145/234 (61%), Gaps = 7/234 (2%) Query: 6 LVMKDITSGYRASVVLRGLSLEIAQGEAVALLGKNGMGKSTLLKTVMGYLGKQSGAVHLH 65 L + ++ Y A+ LRG+SL++ +G+ ++LLG+NG+GK+TLLK +MG L G V Sbjct: 2 LQVNELNQYYGAAHTLRGVSLDVQKGKVLSLLGRNGVGKTTLLKCLMGVLPVAKGNVMFE 61 Query: 66 GSNITRMSPHRIARLGVAYAAQENALFAELSIADNLRLGLTRPALFEERFAAIEG----L 121 G +IT++ PH+ A+LG+AY Q +FA L++ +N+ +G+ L R ++I+G L Sbjct: 62 GHDITKLKPHQRAKLGIAYVPQGREIFARLTVEENMLMGMA--TLSGRRASSIKGEVYEL 119 Query: 122 FPVFRSRLQQYAGTLSGGEQKMLLLARALMMRPALILLDEITEGLQPSVIDRLAHALLEE 181 FPV + L + G LSGG+Q+ L +ARAL+ P LI+LDE TEG+QPS+I + + Sbjct: 120 FPVLKEMLHRRGGDLSGGQQQQLAIARALLAEPKLIILDEPTEGIQPSIIKDIGRVISLL 179 Query: 182 RRQHGTTLLLVEQNVPFALQVADRYLILKQGELVEEGDAKHAGATETVFAHLRV 235 R++ +LL EQ FA ++AD ++++ +GE+V G E V HL V Sbjct: 180 RQRGDIGILLCEQYFDFARELADTFVVMSRGEVVAAGTQDQMDG-EDVKKHLAV 232 >gi|300311769|ref|YP_003775861.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 233 Score = 164 bits (414), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 92/220 (41%), Positives = 137/220 (62%), Gaps = 3/220 (1%) Query: 1 MKQSALVMKDITSGYRASVVLRGLSLEIAQGEAVALLGKNGMGKSTLLKTVMGYLGKQSG 60 M Q L ++ + Y + +L GL LEI GE VAL+G+NG GKST LK +MG L ++ G Sbjct: 1 MSQCLLQVQGLHGWYADAHILFGLDLEIRAGEVVALMGRNGAGKSTTLKALMGLLERRQG 60 Query: 61 AVHLHGSNITRMSPHRIARLGVAYAAQENALFAELSIADNLRLG--LTRPALFEERFAAI 118 + L G +I +++PH+ ARLG+ Y ++ +F ELS+ +NL G RP A+ Sbjct: 61 QIRLAGRDIGKLAPHQRARLGLGYVPEDRRIFTELSVLENLETGRQPPRPGAPHWTPQAL 120 Query: 119 EGLFPVFRSRLQQYAGTLSGGEQKMLLLARALMMRPALILLDEITEGLQPSVIDRLAHAL 178 LFP + Q+ G +SGGEQ+ML +AR LM P L+LLDE +EG+ P +++++A A+ Sbjct: 121 FELFPNLGAMPQRLGGRMSGGEQQMLTIARTLMGNPRLLLLDEPSEGVAPVIVEQMA-AM 179 Query: 179 LEERRQHGTTLLLVEQNVPFALQVADRYLILKQGELVEEG 218 ++E ++ G +LL EQN+ FA V DR +L QG +V G Sbjct: 180 IQELKRSGIAILLCEQNLHFASLVCDRGYLLDQGRIVAAG 219 >gi|300311566|ref|YP_003775658.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 238 Score = 157 bits (396), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 97/234 (41%), Positives = 139/234 (59%), Gaps = 8/234 (3%) Query: 1 MKQSALVMK--DITSGYRASVVLRGLSLEIAQGEAVALLGKNGMGKSTLLKTVMGYLGKQ 58 M +++L++ + +GY S VL G+ L + +GE V++LG+NG G+STLLK +MG L Sbjct: 1 MDKTSLLLSVTGLQAGYGHSRVLHGVDLTVQRGEIVSILGRNGAGRSTLLKALMGLL-PS 59 Query: 59 SGAVHLHGSNITRMSPHRIARLGVAYAAQENALFAELSIADNLRLGLTRPALFEERFAA- 117 G G +I+ + H IARLG+ Y + +F LS+A NL LG +P R Sbjct: 60 RGDCRFEGRDISGLPTHAIARLGMGYVPESREVFPTLSVAQNLLLG-RKPGPQPGRGWCE 118 Query: 118 --IEGLFPVFRSRLQQYAGTLSGGEQKMLLLARALMMRPALILLDEITEGLQPSVIDRLA 175 I LFP R Q A LSGGEQ+ML L RAL+ P+L+L+DE TEGL P +++++A Sbjct: 119 DDIHALFPALYKRRQVAAAALSGGEQQMLALGRALLGNPSLLLVDEPTEGLAPQMVEQVA 178 Query: 176 HALLEERRQHGTTLLLVEQNVPFALQVADRYLILKQGELVEEGDAKHAGATETV 229 A L+E R G +LLVEQ AL+++ R ++ +GE+V EG A ETV Sbjct: 179 RA-LQELRTRGVAVLLVEQKQALALELSQRVYVMGRGEMVFEGTPTGLSAQETV 231 >gi|300311943|ref|YP_003776035.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 229 Score = 153 bits (386), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 84/226 (37%), Positives = 136/226 (60%), Gaps = 4/226 (1%) Query: 11 ITSGYRASVVLRGLSLEIAQGEAVALLGKNGMGKSTLLKTVMGYLGKQSGAVHLHGSNIT 70 + SGY S V+ + L +A+ E VA++G+NGMGK+TL KT+MG L + G++ + G + Sbjct: 7 LASGYGQSKVIHDVDLSVAKEEIVAVMGRNGMGKTTLFKTLMGILPLRGGSISIDGVELG 66 Query: 71 RMSPHRIARLGVAYAAQENALFAELSIADNLRLGLTRPALFEERFA-AIEGLFPVFRSRL 129 + H+ GVAY Q +F+ +++ +N++ GL PA + + + LFPV Sbjct: 67 SLESHQRVERGVAYVPQGRMIFSHMTVLENIQTGL--PAAAKGKVPDELYSLFPVLYDMR 124 Query: 130 QQYAGTLSGGEQKMLLLARALMMRPALILLDEITEGLQPSVIDRLAHALLEERRQHGTTL 189 + G LSGG+Q+ L +ARAL P ++LLDE TEG+QPS+I +A +L E R+ T+ Sbjct: 125 TRKGGNLSGGQQQQLAIARALATNPRVLLLDEPTEGIQPSIIKDIARSLKEIRKIRALTI 184 Query: 190 LLVEQNVPFALQVADRYLILKQGELVEEGDAKHAGATETVFAHLRV 235 ++ EQ + F L++ADR+L++ +G V E D + T+ +L V Sbjct: 185 VVSEQVLSFTLEIADRFLVIDKGRFVYE-DTRENVDAPTISKYLSV 229 >gi|300311116|ref|YP_003775208.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 242 Score = 152 bits (385), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 89/223 (39%), Positives = 135/223 (60%), Gaps = 10/223 (4%) Query: 6 LVMKDITSGYRASVVLRGLSLEIAQGEAVALLGKNGMGKSTLLKTVMGYLGKQSGAVHLH 65 L + ++ + Y VL G+S+E+ +G+ V L+G NG GK+T ++ + G + + G V L Sbjct: 2 LTISNLHAAYGKVEVLHGISMEVPKGKVVTLIGSNGAGKTTTMRAISGMIKPKGGEVTLG 61 Query: 66 GSNITRMSPHRIARLGVAYAAQENALFAELSIADNLRLGL------TRPA--LFEERFAA 117 G NIT + H+IAR G+A++ + +FA +S+ DNL LG RP + + A Sbjct: 62 GKNITGLDSHKIARFGLAHSPEGRRVFATMSVTDNLLLGAFPRFTRARPKGDIAHDLERA 121 Query: 118 IEGLFPVFRSRLQQYAGTLSGGEQKMLLLARALMMRPALILLDEITEGLQPSVIDRLAHA 177 +E LFP + R Q AGTLSGGEQ+ML +ARA+M+ P +ILLDE + GL P ++D + Sbjct: 122 LE-LFPRLKERQSQLAGTLSGGEQQMLAMARAVMLNPEVILLDEPSMGLAPILVDEVFRI 180 Query: 178 LLEERRQHGTTLLLVEQNVPFALQVADRYLILKQGELVEEGDA 220 ++ + Q G T+LLVEQ AL VAD +L+ G++ G A Sbjct: 181 IVRLKEQ-GVTMLLVEQFAAAALNVADYGYVLENGKISVHGPA 222 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.136 0.371 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 649,839 Number of extensions: 24894 Number of successful extensions: 424 Number of sequences better than 1.0e-08: 129 Number of HSP's gapped: 268 Number of HSP's successfully gapped: 145 Length of query: 235 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 153 Effective length of database: 1,231,600 Effective search space: 188434800 Effective search space used: 188434800 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)