BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4511.p
         (276 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311942|ref|YP_003776034.1| aliphatic amidase [Herbaspirill...    67   1e-12
gi|300310754|ref|YP_003774846.1| nitrilase [Herbaspirillum serop...    56   3e-09

>gi|300311942|ref|YP_003776034.1| aliphatic amidase [Herbaspirillum
           seropedicae SmR1]
          Length = 343

 Score = 67.4 bits (163), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 74/249 (29%), Positives = 110/249 (44%), Gaps = 39/249 (15%)

Query: 26  GAALVVLPELVNTGYVFASRAEAFALAETSPDGPTTLAWIEAARRNQIYIVAGIAEREGE 85
           G  LVV PE    G ++  R E F  A   P G  T  + EA R   I  V G+    GE
Sbjct: 51  GLDLVVFPEYSTHGIMY-DREEMFETAAAIP-GDETRIFSEACR---IAGVWGVFSLTGE 105

Query: 86  RL--------YNSAVVIGPDGWL-GVYRKLHLW--------GDEHLFFEAGDKGLPLFHT 128
           R         YN+ ++I   G +   YRK+  W        GD     + G KGL     
Sbjct: 106 RHEEHPRKVPYNTLILINDQGEIVQKYRKIMPWTPIEGWYPGDATYVCD-GPKGL----- 159

Query: 129 QWGRLGVAICYDGWFPEVYRLLAMQGADVVAIPTNWVPMPGQPANREAMATSLAMANAHS 188
              ++ + IC DG +PE++R  AM+GA++V     ++     PA  + +  S AM  A  
Sbjct: 160 ---KISLIICDDGNYPEIWRDCAMKGAELVVRCQGYM----YPAKEQQIMVSKAM--AWM 210

Query: 189 NALNIVCANRIGTERGQPFIGQSLIIGAQGWPLAGPASEDSEQVLYASINLKQTRQA-RH 247
           N L +  AN  G +    + G S I+G  G  L G    +   + YA +++   R A R+
Sbjct: 211 NNLYVAVANAAGFDGVYSYFGHSAIVGFDGRTL-GECGTEEMGIQYAELSISAIRDARRN 269

Query: 248 LTAFNHVLR 256
             + NH+ +
Sbjct: 270 WQSQNHLYK 278


>gi|300310754|ref|YP_003774846.1| nitrilase [Herbaspirillum
           seropedicae SmR1]
          Length = 268

 Score = 55.8 bits (133), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 55/190 (28%), Positives = 93/190 (48%), Gaps = 22/190 (11%)

Query: 10  DNVARSIAFIDRAAAEGAALVVLPELVNTGYVFASRAEAFALAETSPDG--PTTLAWIEA 67
           +N A +   +  AA +GA LV+LPE     +    R E   LA    DG  P        
Sbjct: 20  ENFASATRLVAAAAQQGAQLVLLPEY----WPIMGRHERDKLAHAEADGAGPIQECMASL 75

Query: 68  ARRNQIYIVAG---IAEREGERLYNSAVVIGPDGW-LGVYRKLHLWG--------DEHLF 115
           AR++ +++V G   +     +++ N+++V GP G  +  Y K+HL+         DE   
Sbjct: 76  ARQHGLWLVGGTLPLKADNPDKVLNTSLVYGPQGQRVARYDKIHLFNFVRGEENYDEART 135

Query: 116 FEAGDKGLPLFHTQWGRLGVAICYDGWFPEVYRLLAMQGADVVAIPTNWVPMPGQPANRE 175
            E G + +  F   +GR+G+++CYD  FPE+YR  AM    ++ +P  +    G+ A+ E
Sbjct: 136 IEYGHE-VQSFEAPFGRVGLSVCYDLRFPELYR--AMGECALIVMPAAFTYTTGR-AHWE 191

Query: 176 AMATSLAMAN 185
            +  + A+ N
Sbjct: 192 LLLRARAIEN 201


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.137    0.431 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 950,990
Number of extensions: 41090
Number of successful extensions: 138
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 140
Number of HSP's successfully gapped: 2
Length of query: 276
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 192
Effective length of database: 1,222,130
Effective search space: 234648960
Effective search space used: 234648960
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)