BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4493.p
         (408 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313908|ref|YP_003778000.1| major facilitator superfamily p...   642   0.0  

>gi|300313908|ref|YP_003778000.1| major facilitator superfamily
           permease [Herbaspirillum seropedicae SmR1]
          Length = 410

 Score =  642 bits (1655), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/404 (88%), Positives = 376/404 (93%)

Query: 1   MNPKARSIAWLSRLNFFLADVRDGLGPFLGVFLMGHGWAADDIGYVMTLGGIAGMLATTP 60
           MN KA S+AWLSRLNF LADVRDGLGPFLGVFLMGHGWAADDIGYVMTLGGIAGMLATTP
Sbjct: 1   MNAKAASLAWLSRLNFCLADVRDGLGPFLGVFLMGHGWAADDIGYVMTLGGIAGMLATTP 60

Query: 61  AGALTDAVRAKRLVVGLGSVLVVGGSLLLLVSPSFTITALSQVGTGIVGAVIGPAIAGLT 120
           AGALTDAVRAKRLVVGLGSVLVV GSLLLL+SPSFT+TA+SQVGTGIVGA+IGPAIAGLT
Sbjct: 61  AGALTDAVRAKRLVVGLGSVLVVAGSLLLLISPSFTVTAISQVGTGIVGAIIGPAIAGLT 120

Query: 121 LGIVGQQGLPAQLGRNEAWNHAGNVCSAALAGAIGYYWGLPAVFVLMAVMAVASLLCLAR 180
           LGIVGQQGLP+QLGRNEAWNHAGNV SA LAGA+GY+WGLPAVFVLMAVMAVASLLCLAR
Sbjct: 121 LGIVGQQGLPSQLGRNEAWNHAGNVFSATLAGALGYFWGLPAVFVLMAVMAVASLLCLAR 180

Query: 181 IRPDDIDHDVARGLDPQRAADAPQVSTWRVLAGSRPLLLLALAMMLFHLGNAAMLPLLSQ 240
           IRP+DIDHDVARGLDPQR    P+ STWRVLA SRPL+LLALAMMLFHLGNAAMLPLL Q
Sbjct: 181 IRPEDIDHDVARGLDPQRTGGKPEASTWRVLASSRPLMLLALAMMLFHLGNAAMLPLLGQ 240

Query: 241 SVVARGSADPALYTALTVIVAQLVMIPTALMAGRFAERNGYWLPITIALLVLPVRGMVAG 300
           S V+RG ADPALYTALTVIVAQLVMIPTAL AGRFA+R GYWL ITIALL LP+RGMVAG
Sbjct: 241 SAVSRGGADPALYTALTVIVAQLVMIPTALFAGRFADRKGYWLLITIALLALPLRGMVAG 300

Query: 301 VWDSPWALLPVQVLDGVGAGLLGVALPGSVARILQGSGHINIGLGAVTTIQSIGAAMSPA 360
           VWDSPWALLPVQ+LDGVGAGLLGVALPGSVARIL GSGHINIGLGAVTTIQSIGAAMSPA
Sbjct: 301 VWDSPWALLPVQMLDGVGAGLLGVALPGSVARILHGSGHINIGLGAVTTIQSIGAAMSPA 360

Query: 361 LAGVVAKHYGYGAAFTVLTGIALMALLVWGWLAERRDHGAAVLP 404
           LAGVVA+HYGYGAAF VLTGIAL+AL VW WLAERRDH     P
Sbjct: 361 LAGVVARHYGYGAAFAVLTGIALLALAVWAWLAERRDHAPQGCP 404


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.140    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,203,018
Number of extensions: 46438
Number of successful extensions: 384
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 385
Number of HSP's successfully gapped: 1
Length of query: 408
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 321
Effective length of database: 1,207,925
Effective search space: 387743925
Effective search space used: 387743925
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 132 (55.5 bits)