BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4492.p
         (247 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313907|ref|YP_003777999.1| XRE family transcription regula...   427   e-121

>gi|300313907|ref|YP_003777999.1| XRE family transcription regulator
           protein [Herbaspirillum seropedicae SmR1]
          Length = 247

 Score =  427 bits (1099), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 201/243 (82%), Positives = 227/243 (93%)

Query: 1   MAQTDALVTALKNVLKARGITYAQLAKGLALSEASVKRVFAERSFTLERLDQICTLLGME 60
           MAQ ++LV ALKN+LKARGITYAQLAKGL LSEASVKR+FAERSFTLERLDQ+CTLLG++
Sbjct: 1   MAQAESLVNALKNLLKARGITYAQLAKGLGLSEASVKRIFAERSFTLERLDQVCTLLGIQ 60

Query: 61  ISDLARMVVAEHPIPSRLTAEQEARLVADPRLLLVAVHALQQWTLEEMINTFALTKAECI 120
           ISDLARMVVAE P+PSRLT EQE +LVADP+LLLVAVHAL QWTLEE++++FA+T+AECI
Sbjct: 61  ISDLARMVVAEQPVPSRLTEEQEKKLVADPKLLLVAVHALHQWTLEEIVSSFAMTQAECI 120

Query: 121 RLLARLDKLGILDLLPNNRIRVRVAPDFSWLPGGPIQQYFRAQLRNDFFNSHFDQAGEKM 180
           RLLARLDKLGILDLLPNNRIRVRVAPDFSWLPGGPIQQYFRAQLRNDFFNSHFD+ GEKM
Sbjct: 121 RLLARLDKLGILDLLPNNRIRVRVAPDFSWLPGGPIQQYFRAQLRNDFFNSHFDKPGEKM 180

Query: 181 IMVSGTLSESSNATLQRAMNRLCSDFLAAHHQDLALPLDRRHGASMIVALRPWTPREFQK 240
           IMVSGTLSE SNA +QRAMNRL ++FLAAH QDLALPL+RR G++MIVALRPW+P  FQ+
Sbjct: 181 IMVSGTLSEESNAAVQRAMNRLSAEFLAAHQQDLALPLERRTGSAMIVALRPWSPAHFQQ 240

Query: 241 LLR 243
           + R
Sbjct: 241 MRR 243


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.135    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 713,187
Number of extensions: 27529
Number of successful extensions: 129
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 129
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 164
Effective length of database: 1,226,865
Effective search space: 201205860
Effective search space used: 201205860
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 129 (54.3 bits)