BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4490.p
         (274 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313905|ref|YP_003777997.1| hypothetical protein Hsero_4623...   427   e-121

>gi|300313905|ref|YP_003777997.1| hypothetical protein Hsero_4623
           [Herbaspirillum seropedicae SmR1]
          Length = 265

 Score =  427 bits (1097), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 207/265 (78%), Positives = 233/265 (87%)

Query: 1   MSLRRSCIQRLLASLALSLIFILPMTAYAGQACEQTIPEATAVRAQLEMAARTVERLNAS 60
           MSLR   I+ LLASL L+      + A+AGQACEQTIPEATAVRAQL+MA +TVERLNAS
Sbjct: 1   MSLRPFSIKHLLASLVLAQGLCAALAAHAGQACEQTIPEATAVRAQLDMAVKTVERLNAS 60

Query: 61  GAEVVIIARVGQDLSTYRQRYSHLAFAYRDDQQWYVVHKLNDCGTALSNIYEQGMGQFFM 120
           GA+VVII R+GQDLS Y+QRYSHLA AYRD+QQWYVVHKLN+CGTA+SN+YEQGMGQFFM
Sbjct: 61  GADVVIIGRIGQDLSKYQQRYSHLAIAYRDEQQWYVVHKLNECGTAVSNLYEQGMGQFFM 120

Query: 121 DRPFLLEAYVSVPPPEMQAKLRLAIRGAQVTHLHEPHYNMLAYPWATRYQQSNQWVNETL 180
           D PFLLEAYV+VPPPE+Q KLR AI   QVT +HEP Y+MLAYPWA+RYQQSNQW+ ETL
Sbjct: 121 DSPFLLEAYVAVPPPEVQEKLRAAIVRPQVTRMHEPQYSMLAYPWASRYQQSNQWITETL 180

Query: 181 AHALEPQIESREQAQAWLRLKGYLPDTLHLGPLTRLGGRMFKANIAFDDHPTALRFSDRI 240
           A ALEPQI +REQAQAWLR KGY PDTLHLGP+TRLGGRMFKANIAFDDHP ALRFSDRI
Sbjct: 181 ALALEPQISNREQAQAWLRFKGYAPDTLHLGPMTRLGGRMFKANIAFDDHPNALRFSDRI 240

Query: 241 QTTTADSVLAFLQQAGLESSHFVIQ 265
           +TTTADSV  FL+++GLE+SHFVIQ
Sbjct: 241 ETTTADSVFTFLRRSGLEASHFVIQ 265


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.133    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 806,576
Number of extensions: 31460
Number of successful extensions: 109
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 109
Number of HSP's successfully gapped: 1
Length of query: 274
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 190
Effective length of database: 1,222,130
Effective search space: 232204700
Effective search space used: 232204700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 130 (54.7 bits)