BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4487.p
         (299 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313902|ref|YP_003777994.1| hypothetical protein Hsero_4620...   437   e-124

>gi|300313902|ref|YP_003777994.1| hypothetical protein Hsero_4620
           [Herbaspirillum seropedicae SmR1]
          Length = 298

 Score =  437 bits (1123), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 252/299 (84%), Positives = 274/299 (91%), Gaps = 1/299 (0%)

Query: 1   MTSSPLTDALRAELRAALPILERADSLLGPRLGQVRRAIADADLRRRRYRIHLVERQLLP 60
           MTSSPLTDALRAELRAALPILERAD LLGPRLG+VR AIA AD RRRRYRIHLVERQLLP
Sbjct: 1   MTSSPLTDALRAELRAALPILERADDLLGPRLGKVRSAIATADRRRRRYRIHLVERQLLP 60

Query: 61  AISPTTLKRLIDSVPDFVDEIIRASFAQHQRRFIWFGWMAWFAGRPYREALTLMRVRLTR 120
           AISP TL+RL D++PDFVD++IR++FAQHQRRF+WFGWMAWFAG+PYREALTLMRVRLTR
Sbjct: 61  AISPATLQRLHDTLPDFVDDLIRSTFAQHQRRFMWFGWMAWFAGKPYREALTLMRVRLTR 120

Query: 121 YIDRQRFGQLAAMRDELDRLDGERRALFDASRALGAMMHLIRQSLRNGTDLDQQSWQQLR 180
           Y+DRQRFGQL AMR ELDRLDGERRAL+DASR L A+M LIRQ+LR+G DLD QSWQQLR
Sbjct: 121 YVDRQRFGQLDAMRRELDRLDGERRALYDASRTLRALMRLIRQALRDGIDLDPQSWQQLR 180

Query: 181 TLLAQLPPLQPQTARRTQRQDDDDHAALFSFTTSSQGSSLWRDLGQRNHDPDAFQGQFDG 240
           TLLAQLPPLQP   RRT+RQDDDD AALFSFTTSSQGSSLWRD+GQ   DPDAFQGQFDG
Sbjct: 181 TLLAQLPPLQPPAVRRTRRQDDDDGAALFSFTTSSQGSSLWRDMGQ-GRDPDAFQGQFDG 239

Query: 241 GGASGDWDNGKDSSGDTSGPEGKSAAQQERGNAANDMAPVAAAAGAVAIATDDSLGLFS 299
           GGASGDWDNGK+ +GDT+GPE +S +Q  RGNAANDMAPVAAAAGAVAIATDDSLGLFS
Sbjct: 240 GGASGDWDNGKEGNGDTAGPESRSGSQANRGNAANDMAPVAAAAGAVAIATDDSLGLFS 298


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.134    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 753,521
Number of extensions: 25915
Number of successful extensions: 89
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 88
Number of HSP's successfully gapped: 1
Length of query: 299
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 214
Effective length of database: 1,217,395
Effective search space: 260522530
Effective search space used: 260522530
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)