BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4486.p
         (312 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313901|ref|YP_003777993.1| hypothetical protein Hsero_4619...   530   e-152

>gi|300313901|ref|YP_003777993.1| hypothetical protein Hsero_4619
           [Herbaspirillum seropedicae SmR1]
          Length = 315

 Score =  530 bits (1365), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 264/292 (90%), Positives = 275/292 (94%)

Query: 21  MEFLRQRIEANVLAISRGPGSADFLQPPGDPGLFGPDSAAWQVHSDFTAMLTGGVAALLL 80
           MEFLRQRIEA VL+ISRGPGSADFLQPPGDPGLFGPDSAAWQVHSDFTAMLTGGVAALLL
Sbjct: 24  MEFLRQRIEATVLSISRGPGSADFLQPPGDPGLFGPDSAAWQVHSDFTAMLTGGVAALLL 83

Query: 81  QMLHPLPLAGVWDHSNFQADMLGRLRRTAQFIAGTTFGSRADAERLIARVKQIHLGVTGV 140
           QMLHPLPLAGVWDHSNFQADMLGRLRRTAQF+AGTTFGSRADAERLIARVKQIHLGV GV
Sbjct: 84  QMLHPLPLAGVWDHSNFQADMLGRLRRTAQFVAGTTFGSRADAERLIARVKQIHLGVNGV 143

Query: 141 APDGRPYAASDPELLTWVHVAEVQCFLQGYLRYRNPSFPAVRQDQYFAEIARIAEALGAR 200
           A DGR YAASDP+LLTWVHVAEV CFLQGYLRYR+P+FPA RQDQYF EIA +AEALGAR
Sbjct: 144 AADGRAYAASDPDLLTWVHVAEVHCFLQGYLRYRHPAFPAARQDQYFDEIAGVAEALGAR 203

Query: 201 DVPRSRTQIADYLEAMRAQLQCDERTRQTLQLVLNAPAPNAVAQPWTRLMMRGGVDLLPP 260
            VPRS   IA Y+E MRAQL+CDERTRQTLQLVLNAPAPNAVAQPWTRLMMRGGVDLLPP
Sbjct: 204 AVPRSGAAIARYIEDMRAQLRCDERTRQTLQLVLNAPAPNAVAQPWTRLMMRGGVDLLPP 263

Query: 261 WAQEMLGVTPRPAWRRALLQRSVLLAAQPVRWAMRNGSIHLARRRMGLPPQP 312
           WAQ+MLGV PRP WRRALLQ SVLLAAQP+RWAMRNGS+HLARRRMGLPPQP
Sbjct: 264 WAQQMLGVAPRPPWRRALLQHSVLLAAQPLRWAMRNGSLHLARRRMGLPPQP 315


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.137    0.439 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,058,098
Number of extensions: 44185
Number of successful extensions: 160
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 160
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 227
Effective length of database: 1,217,395
Effective search space: 276348665
Effective search space used: 276348665
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 130 (54.7 bits)