BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4485.p (1062 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313900|ref|YP_003777992.1| cation/multidrug efflux pump pr... 1995 0.0 gi|300311798|ref|YP_003775890.1| cation/multidrug efflux pump pr... 303 7e-83 gi|300313716|ref|YP_003777808.1| cobalt-zinc-cadmium resistance ... 296 5e-81 gi|300310852|ref|YP_003774944.1| cation/multidrug efflux pump tr... 270 7e-73 gi|300313893|ref|YP_003777985.1| cation/multidrug efflux pump pr... 247 4e-66 >gi|300313900|ref|YP_003777992.1| cation/multidrug efflux pump protein [Herbaspirillum seropedicae SmR1] Length = 1063 Score = 1995 bits (5168), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1025/1063 (96%), Positives = 1045/1063 (98%), Gaps = 1/1063 (0%) Query: 1 MNMVALALRRPYTFIVMALLIVLATPLTLKNMATDIFPEINIPVVSIIWNYNGLSAQEMG 60 MNMVALALRRPYTFIVMALLIVLATPLTLKNMATDIFPEINIPVVSIIWNYNGLSAQEMG Sbjct: 1 MNMVALALRRPYTFIVMALLIVLATPLTLKNMATDIFPEINIPVVSIIWNYNGLSAQEMG 60 Query: 61 QRIAAQNERGLTTVVSDIEHIESQSLAGVAVIKVFFQPKANIQTAIAQVVASVQSQLRQL 120 QRIAAQNERGLTTVVSDIEHIESQSLAGV+VIKVFFQPKANIQTAIAQVVASVQ+Q+RQL Sbjct: 61 QRIAAQNERGLTTVVSDIEHIESQSLAGVSVIKVFFQPKANIQTAIAQVVASVQTQVRQL 120 Query: 121 PPGITPPLVIKYSASSIPVMQLALSSPTLPEQAVFDNAVQTLRPQLVTIPGVAVPYPYGG 180 PPGITPPLVIKYSASSIPVMQLALSSPTLPEQ VFD AVQTLRPQLVTIPGVAVPYPYGG Sbjct: 121 PPGITPPLVIKYSASSIPVMQLALSSPTLPEQTVFDAAVQTLRPQLVTIPGVAVPYPYGG 180 Query: 181 KSRLISVDLDTQALQARGLAPIDVVNAINTQNLILPSGTAKFGGAEYSVKINGSPEAVAG 240 KSRLISVDLDTQALQARGLAPIDVVNAINTQNLILPSGTAKFG EYSVKINGSPEAVAG Sbjct: 181 KSRLISVDLDTQALQARGLAPIDVVNAINTQNLILPSGTAKFGATEYSVKINGSPEAVAG 240 Query: 241 LNELPVRTTNGATIYLKDVANVRDGFSPQTNVVRQDGARGVLLSILKNGGASTLDIVDNL 300 LNELPVRTTNGATIYLKDVANVRDGFSPQTNVVRQDGARGVLLSILKNGGASTLDIVDNL Sbjct: 241 LNELPVRTTNGATIYLKDVANVRDGFSPQTNVVRQDGARGVLLSILKNGGASTLDIVDNL 300 Query: 301 RKLLPAAAQTLPEDLKITPLFDQSLFVKAAVTGVISEALIAAGLTAAMVLLFLGNWRSTL 360 RKLLP AAQTLPED+KITPLFDQS+FVKAAVTGVISEALIAAGLTAAMVLLFLGNWRSTL Sbjct: 301 RKLLPTAAQTLPEDIKITPLFDQSVFVKAAVTGVISEALIAAGLTAAMVLLFLGNWRSTL 360 Query: 361 IIGLTIPLSIMAAILMLAALGETLNLMTLGGLALSVGILVDQAIVTIENIERHLHLGKPL 420 IIGLTIPLSIMAAIL+LAALGETLNLMTLGGLALSVGILVDQAIVTIENIERHLHLGKPL Sbjct: 361 IIGLTIPLSIMAAILILAALGETLNLMTLGGLALSVGILVDQAIVTIENIERHLHLGKPL 420 Query: 421 HEAIIVGAGEIGVPAFVATLCICIVFVPMFFLSGVARFLFVPLAEAVVFAMAASYLLSRT 480 H+AIIVGAGEIGVPAFVATLCICIVFVPMFFLSGVARFLFVPLAEAVVFAMAASYLLSRT Sbjct: 421 HDAIIVGAGEIGVPAFVATLCICIVFVPMFFLSGVARFLFVPLAEAVVFAMAASYLLSRT 480 Query: 481 LVPTLVMLLMGSHGQVDHAKQSLLQRLYRAFDSRFERVRHGYTLVLSSLLAHRRRFALSF 540 LVPTLVMLLMGSHGQVD AKQSLLQRLYRAFD+RFERVRHGYTLVLSSLLAHRRRFAL+F Sbjct: 481 LVPTLVMLLMGSHGQVDSAKQSLLQRLYRAFDNRFERVRHGYTLVLSSLLAHRRRFALAF 540 Query: 541 LGFCLLSCLLYPFLGRDFFPNVDGGQIRLHMRMPTGTRIEETARAADEVERVIRSLIPAS 600 LGFCLLSCLLYPFLGRDFFPNVDGGQIRLHMRMPTGTRIEETARAADEVERVIR+LIPAS Sbjct: 541 LGFCLLSCLLYPFLGRDFFPNVDGGQIRLHMRMPTGTRIEETARAADEVERVIRTLIPAS 600 Query: 601 ELETILDNLGVPNSGINLSYSNAGTIGTLDGEILMALKPGHRPSEELVAMLREQLPHRFP 660 ELETILDNLGVPNSGINLSYSNAGTIGTLDGEILMALK GHRP+E LV+MLR +LP RFP Sbjct: 601 ELETILDNLGVPNSGINLSYSNAGTIGTLDGEILMALKEGHRPTEALVSMLRAELPRRFP 660 Query: 661 GIEFFFQPADIVTQILNFGLPAAIDVQFTGANMEANARLAAELTKQIRQIPGAVDAHVHQ 720 GIEFFFQPADIVTQILNFGLPAAIDVQFTG NMEANARLAAELTKQIRQIPGAVDAHVHQ Sbjct: 661 GIEFFFQPADIVTQILNFGLPAAIDVQFTGPNMEANARLAAELTKQIRQIPGAVDAHVHQ 720 Query: 721 RLDGPSLDLRMDRTRLQQFGLSASNVGQNLLIALSGSSQTQPAFWLNPNNGVVYSIAVQS 780 RLDGPSLDLRMDRTRLQQFGLSASNVGQNLLIAL+GSSQTQPAFWLNPNNGVVY+IAVQS Sbjct: 721 RLDGPSLDLRMDRTRLQQFGLSASNVGQNLLIALAGSSQTQPAFWLNPNNGVVYNIAVQS 780 Query: 781 PQYQVDSLDALLNIPVGAGANAA-TPPQLLGNLVDVHAGRQMAVASRYNISPAIDVYVSV 839 PQYQVDSLDALLNIPV GANA+ TPPQLLGNLVDVHAGRQMAVASRYNI+PAIDVYVSV Sbjct: 781 PQYQVDSLDALLNIPVSPGANASTTPPQLLGNLVDVHAGRQMAVASRYNIAPAIDVYVSV 840 Query: 840 QGTDLASVAGKVSELVEQIKPKLARGSQVVIRGQVETMQSSFIGLGVGLAMAIVLVYLLV 899 QGTDLASVAGKVS LVEQIKPKLARGSQVVIRGQVETMQSSF GLGVGLAMAIVLVYLLV Sbjct: 841 QGTDLASVAGKVSALVEQIKPKLARGSQVVIRGQVETMQSSFTGLGVGLAMAIVLVYLLV 900 Query: 900 VVNFQSWIDAAIIIAALPAALAGIAWMLFITGTTLSVPALTGAIMTMGVATANSILIVAF 959 VVNFQSWIDAAIIIAALPAALAGIAWMLFITGTTLSVPALTGAIMTMGVATANSILIVAF Sbjct: 901 VVNFQSWIDAAIIIAALPAALAGIAWMLFITGTTLSVPALTGAIMTMGVATANSILIVAF 960 Query: 960 ARQRREDGATPLAAALEAGSTRIRPVLMTALAMIIGMIPMALGLGEGAEQNAPLGRAVIG 1019 ARQRRE+GATPLAAALEAGSTRIRPVLMTALAMIIGMIPMALGLGEGAEQNAPLGRAVIG Sbjct: 961 ARQRREEGATPLAAALEAGSTRIRPVLMTALAMIIGMIPMALGLGEGAEQNAPLGRAVIG 1020 Query: 1020 GLLLATVSTLFFVPVVFAGVHQRLARRAEQRRARAAGPAHQES 1062 GL+LATVSTLFFVPVVFAGVHQRLARRA+QRRA A GPAHQES Sbjct: 1021 GLMLATVSTLFFVPVVFAGVHQRLARRADQRRALAGGPAHQES 1063 >gi|300311798|ref|YP_003775890.1| cation/multidrug efflux pump protein [Herbaspirillum seropedicae SmR1] Length = 1051 Score = 303 bits (775), Expect = 7e-83, Method: Compositional matrix adjust. Identities = 289/1091 (26%), Positives = 506/1091 (46%), Gaps = 84/1091 (7%) Query: 1 MNMVALALRRPYTFIVMALLIVLATPLTLKNMATDIFPEINIPVVSIIWNYNGLSAQEMG 60 M++ A ++RP ++A+ I+L + P+++ P + + G S + M Sbjct: 1 MSVSAAFIKRPIGTTLLAIAILLVGVAVWPLLPVAPLPQVDFPTIQVTAQLPGGSPETMA 60 Query: 61 QRIAAQNERGLTTVVSDIEHIESQSLAGVAVIKVFFQPKANIQTAIAQVVASVQSQLRQL 120 +A ER + +++ + + SQS G I + F NI A V A++ + QL Sbjct: 61 SNVAQPLERQFS-LIAGLSQMTSQSTLGSTQITLQFDLNRNIDAAALDVQAAINASTGQL 119 Query: 121 PPGI-TPPLVIKYSASSIPVMQLALSSPTLPEQAVFDNAVQTLRPQLVTIPGVAVPYPYG 179 P + PP K + + P+M +++ S LP V D A L Q+ I GV + G Sbjct: 120 PANLPNPPTFRKINPADSPIMIMSVQSEALPLTVVNDYADNILAQQISQISGVGLVNVNG 179 Query: 180 GKSRLISVDLDTQALQARGLAPIDVVNAINTQNLILPSGTAKFGGAEYSVKINGSPEAVA 239 + + + +D L GL+ D+ I T + P GT ++V N Sbjct: 180 QQKPAVRIQVDPAKLATLGLSLEDIRGVIATTTVNQPKGTVDGARQAFTVYTNDQLLKAE 239 Query: 240 GLNELPVRTTNGATIYLKDVANVRDGFSPQTNVVRQ--------------DGARGVLLSI 285 N++ + NGA I +KD+ DG P+ N + R ++L+I Sbjct: 240 QWNDMVLAWRNGAPIRVKDIGIAVDG--PENNKIAAWAFAGAANTADHSITNGRSIVLAI 297 Query: 286 LKNGGASTLDIVDNLRKLLPAAAQTLPEDLKITPLFDQSLFVKAAVTGVISEALIAAGLT 345 K GA+ ++ V ++ +P +P + + L D++ ++A+V V ++ L Sbjct: 298 TKQPGANVIETVGRIKAAMPRLRAAIPAAIHVNTLIDRTQTIRASVEDVEFTLVLTIALV 357 Query: 346 AAMVLLFLGNWRSTLIIGLTIPLSIMAAILMLAALGETLNLMTLGGLALSVGILVDQAIV 405 ++ +FL N +TLI +T+PL+IM ++ +G +L+ ++L L ++VG +VD AIV Sbjct: 358 VMVIFVFLRNVAATLIPSVTVPLAIMGTAGVMYVVGYSLDNLSLMALTIAVGFVVDDAIV 417 Query: 406 TIENIERHLHLGKPLHEAIIVGAGEIGVPAFVATLCICIVFVPMFFLSGVARFLFVPLAE 465 +ENI R++ G EA + GAGEIG ++ + VF+P+ + G+ LF A Sbjct: 418 MLENIYRYVEEGMTPLEAALKGAGEIGFTIISISVSLVAVFIPLLLMGGIVGRLFREFAV 477 Query: 466 AVVFAMAASYLLSRTLVPTLV-MLLMGSHGQVDHAKQSLLQRLYRAFDSRFERVRHGYTL 524 V +A S ++S TL P L L HGQ H K LY+ F+ F+ + GY Sbjct: 478 TVTLTIAVSVIISLTLTPMLCSRFLKNEHGQ-RHGK------LYQWFERCFDAMLAGYKR 530 Query: 525 VLSSLLAHRRRFALSFLGFCLLSCLLYPFLGRDFFPNVDGGQIRLHMRMPTGTRIEETAR 584 L ++ H+ +SF+ L+ +L+ F+ + FFP D G I + ++T+ Sbjct: 531 GLDVVMKHQFITLMSFIATLALTAVLFIFIPKGFFPQQDNGVI-----VGFAESAQDTSS 585 Query: 585 AADEVERVIRSLIPASELETILDNLGVPNSGINLSYSNAGTIGTLDGEILMALKPGHR-- 642 AA ER+++ A + D +G S AG+ G+ +ALKP + Sbjct: 586 AAMH-ERLLKV---AEVVRQDPDVIGFAMS--------AGSTTFNTGQFFIALKPKDQGR 633 Query: 643 --PSEELVAMLREQLPHRFPGIEFFFQPADIVTQILNFG---LPAAIDVQFTGANMEANA 697 ++E++A LR ++ R G+ F Q +Q +N G T +++ Sbjct: 634 TTNADEIIARLRPKV-ARIEGVNLFMQ----ASQDINVGGRLSRTQYQYTITDTDLDELN 688 Query: 698 RLAAELTKQIRQIPGAVDAHVHQRLDGPSLDLRMDRTRLQQFGLSASNVGQNLLIALSGS 757 A + ++ RQ+P D Q+ + + +DR R FG+S S + + A+ Sbjct: 689 VWAPRMLERFRQLPQLTDVASDQQNQAAAAVITIDRARASSFGISPSLIDATIYDAI--- 745 Query: 758 SQTQPAFWLNPNNGVVYSIAVQ-SPQYQVDS--LDAL-LNIPVGAGANAATPPQL-LGNL 812 Q Q A + N Y + ++ +P Q D D L L P+ T Q+ L Sbjct: 746 GQRQVAQYFTQINS--YRVILEVTPALQKDPALFDKLYLTSPL-------TGQQVPLSTF 796 Query: 813 VDVHAGRQMAVA-SRYNISPAIDVYVSV-QGTDLASVAGKVSELVEQIKPKLARGSQVV- 869 V + + ++ S + PA+ + ++ +G L G+ +++++ K ++ +V Sbjct: 797 VKIDTSKTSYLSISHQSQFPAVTISFNLAKGVSL----GEAVDVIQKTKDQMGVPQTLVG 852 Query: 870 -IRGQVETMQSSFIGLGVGLAMAIVLVYLLVVVNFQSWIDAAIIIAALPAALAGIAWMLF 928 +G + S +A A++ VY+++ + ++S+I I++ LP+A G +L Sbjct: 853 NFQGTAKAFGDSLSSQPYLIAAALIAVYIVLGLLYESYIHPLTILSTLPSAGVGALLILM 912 Query: 929 ITGTTLSVPALTGAIMTMGVATANSILIVAFA-RQRREDGATPLAAALEAGSTRIRPVLM 987 G LSV AL G I+ +G+ N I+++ FA R G P A +A R RP++M Sbjct: 913 AGGYDLSVIALIGIILLIGIVKKNGIMMIDFALTAERSQGMKPEQAIYQACLLRFRPIMM 972 Query: 988 TALAMIIGMIPMALGLGEGAEQNAPLGRAVIGGLLLATVSTLFFVPVVFAGV---HQRLA 1044 T + ++ +P+ LG G G+E PLG A++GGL+L+ TLF PVV+ + H Sbjct: 973 TTMCALLSGLPLMLGHGAGSELRRPLGYAMVGGLILSQALTLFTTPVVYLYLDRAHYWYM 1032 Query: 1045 RRAEQRRARAA 1055 R+ E R+AR A Sbjct: 1033 RKKEARQARKA 1043 >gi|300313716|ref|YP_003777808.1| cobalt-zinc-cadmium resistance cation efflux system transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 1073 Score = 296 bits (759), Expect = 5e-81, Method: Compositional matrix adjust. Identities = 273/1037 (26%), Positives = 486/1037 (46%), Gaps = 82/1037 (7%) Query: 28 TLKNMATDIFPEINIPVVSIIWNYNGLSAQEMGQRIAAQNERGLTTVVSDIEHIESQSLA 87 + + + D P+I V I + G S E QRI+ E L + + ++E + S S Sbjct: 30 SYQKLPIDAVPDITNVQVQINTSAPGYSPLEAEQRISYPIET-LMSGLPNLEQVRSLSRY 88 Query: 88 GVAVIKVFFQPKANIQTAIAQVVASVQSQLRQLPPGITPPL------VIKYSASSIPVMQ 141 G++ + V F+ +I A V +Q QLPPGI P + + + ++ Sbjct: 89 GLSQVTVIFKDGTDIYFARQLVNERIQLARSQLPPGIDPGMGPISTGLGEIYLWTVESRD 148 Query: 142 LALSSPTLPEQAVFDNAVQ--TLRPQLVTIPGVAVPYPYGGKSRLISVDLDTQALQARGL 199 A P A +Q ++PQL +PGV GG ++ V + L + G+ Sbjct: 149 DARKPDGTPYTATDLREIQDWVIKPQLRLVPGVTEINTIGGFAKEYLVAPSAEKLASYGM 208 Query: 200 APIDVVNAINTQNLILPSGTAKFGGAEYSVKINGSPEAVAGLNELPVRTTNGATIYLKDV 259 ++ A+ N + +G + G +Y ++ G ++ + + + G I ++DV Sbjct: 209 TMDTIIKALEKNNSNVGAGYIERRGEQYLIRAPGQVASIDDIGNIVLANVKGVPIRIRDV 268 Query: 260 ANVRDGFSPQTNVVRQDGARGVLLSILKNGGASTLDIVDNLRKLLPAAAQTLPEDLKITP 319 A V G +T ++G VL ++ G ++ + + + + ++LP+ ++ Sbjct: 269 AEVEIGRELRTGAATENGREVVLGTVFMLIGENSRKVSQAVARKMEEINRSLPKGVEAVT 328 Query: 320 LFDQSLFVKAAVTGVISEALIAAGLTAAMVLLFLGNWRSTLIIGLTIPLSIMAAILMLAA 379 ++D+++ V A+ V + A L A++ +FLGN R+ +I + IPL+++ + + Sbjct: 329 VYDRTVLVDKAIATVKKNLVEGALLVVAVLFVFLGNIRAAIITAMVIPLAMLFTFTGMVS 388 Query: 380 LGETLNLMTLGGLALSVGILVDQAIVTIENIERHL-----HLGKPL------HEAIIVGA 428 + NL++LG AL GI++D A+V +EN R L H G+ L HE + A Sbjct: 389 NKVSANLLSLG--ALDFGIIIDGAVVIVENCVRRLAHAQAHHGRTLTRSERFHE-VFAAA 445 Query: 429 GEIGVPAFVATLCICIVFVPMFFLSGVARFLFVPLAEAVVFAMAASYLLSRTLVPTLVML 488 E P L I IV++PMF L+GV +F P+A VV A+ + +LS T +P + L Sbjct: 446 KEARRPLIFGQLIIMIVYLPMFALTGVEGKMFTPMAFTVVAALIGAMILSVTFIPAAIAL 505 Query: 489 LMGSHGQVDHAKQSLLQRLYRAFDSRFERVRHGYTLVLSSLLAHRRRFALSFLGFCLLSC 548 +G +V + L+ R ++ + + +VL+ F G +L C Sbjct: 506 FIGE--KVAEKENILMLWAKRLYEPMLKTIMENKPVVLT------------FAGALILVC 551 Query: 549 -LLYPFLGRDFFPNVDGGQIRLH-MRMPTGTRIEETARAADEVERVIRSLIPASELETIL 606 ++ LG +F P+++ G + + +R+P GT + ++ ++E+ ++ P E+E + Sbjct: 552 GVVASRLGSEFVPSLNEGDMAIQALRIP-GTSLSQSLEMQKQIEKTLKQKFP--EVERVF 608 Query: 607 DNLGVPNSGINLSYSNAGTIGTLDGEILMALKPGH------RPSEELVAMLREQLPHRFP 660 G + N DG I+ LKP + EEL+ +++++ + P Sbjct: 609 ARTGTAEVASDPMPPNIS-----DGYIM--LKPQEQWPEPKKSREELLEAIQDEV-AKIP 660 Query: 661 GIEF-FFQPADIVTQILNFGLPAAIDVQFTGANMEANARLAAELTKQIRQIPGAVDAHVH 719 G + F QP + L G+ + + V+ G +M+ A++++ + +IPGA + + Sbjct: 661 GNSYEFSQPIQLRFNELISGVRSDVAVKVFGDDMKVLNDTASKISAVLEKIPGATEVKIE 720 Query: 720 QRLDGPSLDLRMDRTRLQQFGLSASNVGQNLLIALSGSSQTQPAFWLNPNNGVVYSIAVQ 779 Q P L + +DR + ++GL+ S++ + A+ G + F + G+V V+ Sbjct: 721 QTTGLPMLTVEIDREKTARYGLNVSDIQDTVATAIGGK-EAGTMFQGDRRFGIV----VR 775 Query: 780 SPQYQVDSLDALLNIPVGAGANAATPPQL---------LGNLVDVHAGRQMAVASRYNIS 830 P L+A+ +P+ A PPQ LG + + SR + Sbjct: 776 LPDQARTDLEAIRRLPI------ALPPQEGATRVSYVPLGEVASLTIAPGPNQISREDGK 829 Query: 831 PAIDVYVSVQGTDLASVAGKVSELVEQIKP--KLARGSQVVIRGQVETMQSSFIGLGVGL 888 I V +V+G DL G V+E Q++ K+ G GQ E +QS+ L + + Sbjct: 830 RRIVVSANVRGRDLG---GFVAEAERQLQSAVKVPAGYWTTWGGQFENLQSATQRLQIVI 886 Query: 889 AMAIVLVYLLVVVNFQSWIDAAIIIAALPAALAGIAWMLFITGTTLSVPALTGAIMTMGV 948 +A+++V++L+ F + D ++ +P AL G L + G +S+ A G I GV Sbjct: 887 PVALLMVFVLLFAMFSNVKDGLLVFTGIPFALTGGILALAMRGIPMSISAAVGFIALSGV 946 Query: 949 ATANSILIVAFARQRREDGATPLAAALEAGSTRIRPVLMTALAMIIGMIPMALGLGEGAE 1008 A N +++++F R RE+G T AA E TR+RPVLMTAL +G +PMAL G GAE Sbjct: 947 AVLNGLVMISFIRSLREEGRTLDAAIHEGAMTRLRPVLMTALVASLGFVPMALATGTGAE 1006 Query: 1009 QNAPLGRAVIGGLLLAT 1025 PL VIGG+L +T Sbjct: 1007 VQRPLATVVIGGILSST 1023 >gi|300310852|ref|YP_003774944.1| cation/multidrug efflux pump transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 1048 Score = 270 bits (689), Expect = 7e-73, Method: Compositional matrix adjust. Identities = 270/1071 (25%), Positives = 492/1071 (45%), Gaps = 76/1071 (7%) Query: 10 RPYTFIVMALLIVLATPLTLKNMATDIFPEINIPVVSIIWNYNGLSAQEMGQRIAAQNER 69 RP ++ L I+L + + + PE++ P + ++ Y G S M + A ER Sbjct: 10 RPVATSLLMLAILLVGIVAYRLLPLSALPEVDYPTIQVVTLYPGASPDVMTSSVTAPLER 69 Query: 70 GLTTVVSDIEHIESQSLAGVAVIKVFFQPKANIQTAIAQVVASVQSQLRQLPPGI-TPPL 128 + ++ + S S G +VI + F ++ A +V A++ + LP + PP+ Sbjct: 70 QFGQM-PGLKQMSSTSSGGASVITLQFNLDLSLDIAEQEVQAAINAGSNLLPSDLPMPPV 128 Query: 129 VIKYSASSIPVMQLALSSPTLPEQAVFDNAVQTLRPQLVTIPGVAVPYPYGGKSRLISVD 188 K + + P++ LA++S T+P V D + ++ + GV + GG+ + + Sbjct: 129 YSKVNPADTPIITLAVTSNTMPLPKVQDLIDTRIAQKISQLSGVGLVSLSGGQRPAVRMQ 188 Query: 189 LDTQALQARGLAPIDVVNAINTQNLILPSGTAKFGGAEYSVKINGSPEAVAGLNELPVRT 248 L+ +A+ A GL DV AI N+ G+ ++ N + L + Sbjct: 189 LNPRAVAALGLNLDDVRTAIGNANVNQAKGSFDGPTRASTIDANDQLRSADEYRNLIIAY 248 Query: 249 TNGATIYLKDVANVRDGFSPQTNVVRQDGARGVLLSILKNGGASTLDIVDNLRKLLPAAA 308 NGA I + DVA+V DG + V+++I + GA+ + +VD+++K+LP Sbjct: 249 KNGAPIRVSDVADVVDGAENVRLGAWANTQPAVIVNIQRQPGANVIAVVDSIKKILPQLQ 308 Query: 309 QTLPEDLKITPLFDQSLFVKAAVTGVISEALIAAGLTAAMVLLFLGNWRSTLIIGLTIPL 368 +LP + + L D++ ++A+V V E L++ L ++ +FL N +T+I + +PL Sbjct: 309 ASLPGAIDVHILTDRTTTIRASVDDVKFELLLSVALVVMVIFVFLRNVPATIIPSVAVPL 368 Query: 369 SIMAAILMLAALGETLNLMTLGGLALSVGILVDQAIVTIENIERHLHLGKPLHEAIIVGA 428 S++ ++ G ++N +TL L ++ G +VD AIV IENI R++ G +A + GA Sbjct: 369 SLVGTFAIMYLAGFSINNLTLMALTIATGFVVDDAIVMIENISRYIEEGMKPMQAALKGA 428 Query: 429 GEIGVPAFVATLCICIVFVPMFFLSGVARFLFVPLAEAVVFAMAASYLLSRTLVPTLVML 488 +IG T + V +P+ F+ V LF A + ++ S ++S TL P + Sbjct: 429 EQIGFTIISLTFSLIAVLIPLLFMGDVVGRLFHEFAVTLAVSILISAVVSLTLTPMMCAR 488 Query: 489 LMGSHGQVDHAKQSLLQRLYRAFDSRFERVRHGYTLVLSSLLAHRRRFALSFLGFCLLSC 548 L+ H + Y F+R+ Y ++L +LA ++ L L+ Sbjct: 489 LL------RHQPEEQQGWFYHKSQQFFDRIIARYGVMLQWVLARQKLTLLVAAATLGLTV 542 Query: 549 LLYPFLGRDFFPNVDGGQIRLHMRMPTGTRIEETARAADEVERVIRSLIPASELETILDN 608 LLY F+ + FFP D G I+ + T+ + ++ +++ + ++ +E++ Sbjct: 543 LLYVFVPKGFFPLQDTGVIQ---GISEATQSISFSAMGEKQQQLAKVVLQDPAVESLTSF 599 Query: 609 LGVPNSGINLSYSNAGTIGTLD-GEILMALKPGHRPSE----ELVAMLREQLPHRFPGIE 663 +GV GT TL+ G +L+ LKP H E +++ L+ +L PGI Sbjct: 600 IGVD-----------GTNATLNSGRMLINLKP-HDVREVSATDVIRRLQGKLAAEVPGIT 647 Query: 664 FFFQPADIVTQILNFGLPAAIDVQFT--GANMEANARLAAELTKQIRQIPGAVDAHVHQR 721 + QP +T + + QFT A+ + +L +++Q D + + Sbjct: 648 LYMQPVQDLTIEDSV---SRTQYQFTLEDADPAVLSTWVPKLIARLQQQSELADVATNLQ 704 Query: 722 LDGPSLDLRMDRTRLQQFGLSASNVGQNLLIALSGSSQTQPAFWLNPNNGVVYSIAVQSP 781 G + +DR + G++ + + L A ++ +I QS Sbjct: 705 DQGLQAYIEIDRNAASRLGITTAAIDNALYNAF--------------GQRLISTIYTQSN 750 Query: 782 QYQV------------DSLDALLNIPVGAG----ANAATPPQLLGNLVDVHAGRQMAVAS 825 QY+V +LD++ + G G ++ AT + LV H G+ A Sbjct: 751 QYRVVMEVKPEFQHGPAALDSIYLVTSGGGKVPLSSIATVTERTAPLVVNHIGQFPAATV 810 Query: 826 RYNISPAIDVYVSVQGTDLASVAGKVSELVEQIKPKLARGSQVVIRGQVETMQSSFIGLG 885 +N++ +G L + E+I + + +G Q+S Sbjct: 811 SFNLA---------KGASLGEAVKAIKAAEEEI--GMPASTVTNFQGAALAFQASLSNTL 859 Query: 886 VGLAMAIVLVYLLVVVNFQSWIDAAIIIAALPAALAGIAWMLFITGTTLSVPALTGAIMT 945 + AIV +Y+++ V ++S+I I++ LP+A G L I+GT L + + G I+ Sbjct: 860 WLILAAIVTMYIVLGVLYESYIHPITILSTLPSAGVGALLSLMISGTDLGIIGIIGIILL 919 Query: 946 MGVATANSILIVAFARQ-RREDGATPLAAALEAGSTRIRPVLMTALAMIIGMIPMALGLG 1004 +G+ N+I+++ FA + R +G +P A +A R RP+LMT +A ++G +P+ LG G Sbjct: 920 IGIVKKNAIMMIDFALEAERHEGKSPREAIYQACLLRFRPILMTTMAALLGALPLMLGTG 979 Query: 1005 EGAEQNAPLGRAVIGGLLLATVSTLFFVPVVFAGVHQRLARRAEQRRARAA 1055 G+E PLG ++GGLL++ V TLF PV++ G L RR R + A Sbjct: 980 VGSELRQPLGITMVGGLLVSQVLTLFTTPVIYLG-FDSLGRRLRARFGQRA 1029 >gi|300313893|ref|YP_003777985.1| cation/multidrug efflux pump protein [Herbaspirillum seropedicae SmR1] Length = 1051 Score = 247 bits (630), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 265/1073 (24%), Positives = 473/1073 (44%), Gaps = 61/1073 (5%) Query: 3 MVALALRRPYTFIVMALLIVLATPLTLKNMATDIFPEINIPVVSIIWNYNGLSAQEMGQ- 61 M + RP V+A++I+L +++++++ + +P+I P V+I Y G SA+ + Sbjct: 1 MARFFIDRPIFAWVIAIIIMLGGMMSIRSLSLEQYPDIAPPKVNIKATYTGASAKTLEDS 60 Query: 62 --RIAAQNERGLTTVVSDIEHIESQSLAGVA-VIKVFFQPKANIQTAIAQVVASVQSQLR 118 ++ Q +GL +++++ + S + + + + F N A QV +Q Sbjct: 61 VTQVIEQQMKGL----DNLQYMSASSSSAGSATVSLTFTAGTNPDVAQMQVQNKLQQVTA 116 Query: 119 QLPPGITPPLVIKYSASSIPVMQLALSS--PTLPEQAVFDNAVQTLRPQLVTIPGVAVPY 176 +LP + V AS+ +M L+L+S P + + D TL Q+ + GV Sbjct: 117 RLPQAVQNNGVTVTKASTDILMVLSLTSDDPRITSIDIGDFISSTLTDQISRVEGVGDVT 176 Query: 177 PYGGKSRLISVDLDTQALQARGLAPIDVVNAINTQNLILPSGTAKFGGAEYSVKINGSPE 236 +G + + + +D LQ L P D+ +A+ QN + +G A+ +IN + Sbjct: 177 AFG-TNYAMRIWIDPAKLQKYALMPSDITSALQAQNTEVSAGEIGALPAQPGQQINATIT 235 Query: 237 AVAGL-------NELPVRTTNGATIYLKDVANVRDGFSPQTNVVRQDGARGVLLSILKNG 289 A + L N + + +G+ + L DVA V G +Q+G L+I Sbjct: 236 ARSKLTTPDEFRNIIVKSSVDGSVVKLSDVARVELGGESYQVASQQNGKPSSALAIQLAT 295 Query: 290 GASTLDIVDNLRKLLPAAAQTLPEDLKITP--LFDQSLFVKAAVTGVISEALIAAGLTAA 347 GA+ L D ++K L P +K+ +D + FV+ ++ V+ + A L Sbjct: 296 GANALATADAVKKKLAELEPYFPASMKLKTNIAYDTTPFVRVSLEEVVKTLIEAIVLVVL 355 Query: 348 MVLLFLGNWRSTLIIGLTIPLSIMAAILMLAALGETLNLMTLGGLALSVGILVDQAIVTI 407 ++ LFL N R+T I +T+P+ ++ +LA G ++N +T+ G+ L++G+LVD AIV + Sbjct: 356 IMYLFLQNIRATFIPAITVPVVLLGTFGILAMFGYSINTLTMFGMVLAIGLLVDDAIVVV 415 Query: 408 ENIERHLHLGK-PLHEAIIVGAGEIGVPAFVATLCICIVFVPMFFLSGVARFLFVPLAEA 466 EN+ER + K EA EI + + VF+PM F G ++ + Sbjct: 416 ENVERLMSEEKLSPKEATRKSMQEITGALVGIAMVLSAVFIPMAFFGGSTGVIYRQFSIT 475 Query: 467 VVFAMAASYLLSRTLVPTLVMLLMGSHGQVDHAKQSLLQRLYRAFDSRFERVRHGYTLVL 526 +V AMA S +++ TL P L L+ H H +Q R + F+ F+R Y + Sbjct: 476 IVSAMALSVMVALTLTPALCATLLKPHAG-GHVQQG---RFFTWFNRSFDRSATRYQGGV 531 Query: 527 SSLLAHRRRFALSFLGFCLLSCLLYPFLGRDFFPNVDGGQIRLHMRMPTGTRIEETARAA 586 + LL +R L + + +L+ L F P D G + +++PTG E+TA Sbjct: 532 AGLLKRGKRGLLMYALIAVAMAVLFMRLPTSFLPEEDQGVLMAQIQLPTGATAEQTATVV 591 Query: 587 DEVERVIRSLIPASELETILDNLGVPNSGINLSYSNAGTIGTLDGEILMALKPGHRPSEE 646 V+ ++ E++ L + +G+ + N + G S E Sbjct: 592 KTVQEYF-----MNKPESVESVLAIVGAGVGGNSQNGARAFIRLKDWEQRTGAGQSAS-E 645 Query: 647 LVAMLREQLPHRFPGIEFFFQPADIVTQILNFGLPAAIDVQFT---GANMEANARLAAEL 703 LV L F P + G + D++ G +A + + Sbjct: 646 LVRRANADLSKIRGARVFLMNPP----AVRGLGQSSGFDLELKDVGGVGHDALLQARDQF 701 Query: 704 TKQIRQIPGAVDAHVHQRLDGPSLDLRMDRTRLQQFGLSASNVGQNLLIALSGSSQTQPA 763 + R + D P L + +D + ++ S++ L A+ G+ Sbjct: 702 LQLARSNALLANVRTTGLDDTPQLRVAIDDRKADALSIATSDINATLATAMGGT------ 755 Query: 764 FWLNP--NNGVVYSIAVQSP---QYQVDSLDALLNIPVGAGANAATPPQLLGNLVDVHAG 818 ++N +NG V + VQ + Q D L+ NAA+ + Sbjct: 756 -YVNDFLSNGRVKKVYVQGDSAFRMQADDLNRWYV------RNAASQMVPFAAFMSSQWT 808 Query: 819 RQMAVASRYNISPAIDVYVSVQGTDLASV-AGKVSELVEQIKPKLARGSQVVIRGQVETM 877 ++ RYN + ++ G A V +G VE++ +L G G Sbjct: 809 YGPSLLERYNGVSSFEIV----GEPAAGVSSGTAMAEVEKLVAQLPAGIGFEWTGSSYQE 864 Query: 878 QSSFIGLGVGLAMAIVLVYLLVVVNFQSWIDAAIIIAALPAALAGIAWMLFITGTTLSVP 937 + S + A++I+ V+L + ++SW +I A+P + G + I G + V Sbjct: 865 RLSGNQAPMLYAISILFVFLCLAALYESWSVPFAVILAVPLGIIGTVLLTGIFGMSNDVY 924 Query: 938 ALTGAIMTMGVATANSILIVAFARQRREDGATPLAAALEAGSTRIRPVLMTALAMIIGMI 997 G + T+G++ N+ILIV FA+Q E G + A LEA R+RP+LMT+LA + G++ Sbjct: 925 FQVGLLTTVGLSAKNAILIVEFAKQLHESGKSLWEATLEAVQLRLRPILMTSLAFMFGVL 984 Query: 998 PMALGLGEGAEQNAPLGRAVIGGLLLATVSTLFFVPVVFAGVHQRLARRAEQR 1050 P+A+ G G+ +G V+GG+L AT+ +FFVP+ + + L RRA ++ Sbjct: 985 PLAVASGAGSASRRAIGTGVLGGMLSATLLGIFFVPLFYYLIGAWLDRRAARK 1037 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.137 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 3,054,710 Number of extensions: 131169 Number of successful extensions: 664 Number of sequences better than 1.0e-08: 11 Number of HSP's gapped: 595 Number of HSP's successfully gapped: 17 Length of query: 1062 Length of database: 1,619,870 Length adjustment: 95 Effective length of query: 967 Effective length of database: 1,170,045 Effective search space: 1131433515 Effective search space used: 1131433515 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 136 (57.0 bits)