BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4482.p (516 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313897|ref|YP_003777989.1| methyl-accepting chemotaxis pro... 850 0.0 gi|300310474|ref|YP_003774566.1| methyl-accepting chemotaxis tra... 667 0.0 gi|300312038|ref|YP_003776130.1| methyl-accepting chemotaxis tra... 548 e-157 gi|300309735|ref|YP_003773827.1| methyl-accepting chemotaxis sen... 517 e-148 gi|300313024|ref|YP_003777116.1| methyl-accepting chemotaxis pro... 509 e-145 >gi|300313897|ref|YP_003777989.1| methyl-accepting chemotaxis protein I [Herbaspirillum seropedicae SmR1] Length = 516 Score = 850 bits (2197), Expect = 0.0, Method: Compositional matrix adjust. Identities = 449/516 (87%), Positives = 480/516 (93%) Query: 1 MNWFNNLKIAKKLILSFAAVIVLTVALGVFAIIELKVVNQASTDMASNWLPTIKAAQSIQ 60 M WFNNLKIAKKLI+SFAAVIVLTV LG+FAI ELK VNQASTDMA+NWLPTIKAAQSIQ Sbjct: 1 MTWFNNLKIAKKLIVSFAAVIVLTVILGLFAIRELKAVNQASTDMATNWLPTIKAAQSIQ 60 Query: 61 ASLPRMRISELQMITAVTPAEREDAIKAIKSRLDILTKQRAAYEALISEAEEKLAYDKFS 120 ASLPRMRISELQM+TA TPAEREDA+KAIKSRLDIL KQRAAYEA ISEAEEK+ Y+KFS Sbjct: 61 ASLPRMRISELQMVTAATPAEREDALKAIKSRLDILAKQRAAYEAQISEAEEKVLYEKFS 120 Query: 121 KSFASYLELDKKLAEISGAGKEEEARALFKGDSNKTFRSMLESMDEIIKINDAGSARSDQ 180 KSFA+YLE+DK+LA IS GKEEEARALFKGDSNKTFRSM+E+MDEIIK+NDAGS RSD Sbjct: 121 KSFATYLEIDKELARISAEGKEEEARALFKGDSNKTFRSMIENMDEIIKVNDAGSKRSDD 180 Query: 181 TANDVFNAARTWIIGLLATIVVIAFGLAAAVARAVSRPLNEAVSVAERVAQGDLTVQINT 240 A V+ +A WIIGLLA IVVIA GLA VARAVSRPLNEAV+VAERVAQGDLT+ I Sbjct: 181 MAEQVYRSATLWIIGLLAAIVVIALGLAVMVARAVSRPLNEAVAVAERVAQGDLTMDIRA 240 Query: 241 ASKDETGMLMHSLRTMNDSLHKIVSEVRYGTDAISTASQEIASGNLDLSSRTEQQAGSLE 300 S DETGMLMHSLR MNDSL +IV EVR GTD I+TASQEIA+GNLDLSSRTE+QAGSLE Sbjct: 241 TSTDETGMLMHSLRAMNDSLQQIVGEVRTGTDTITTASQEIATGNLDLSSRTEEQAGSLE 300 Query: 301 ETASAMEELTATVKQNADNARQANQLAASASDIASQGGEVVSQVVQTMEGITESSSRIAD 360 ETASAMEELTATVKQNADNARQANQLAASASDIA+QGG VV QVVQTMEGITESS+RIAD Sbjct: 301 ETASAMEELTATVKQNADNARQANQLAASASDIATQGGAVVGQVVQTMEGITESSNRIAD 360 Query: 361 IITVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKQLIDD 420 II+VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA+AAKEIKQLIDD Sbjct: 361 IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKQLIDD 420 Query: 421 SVEKVGAGSQLVERAGATMSDVVSSVRRVTGVVAEISAASSEQSTGIEEINRAVTQMDEV 480 SVEKVGAGSQLVERAGATMS+VV+SVRRVT VVAEISAAS+EQSTGIEEINRA+TQMDEV Sbjct: 421 SVEKVGAGSQLVERAGATMSEVVASVRRVTDVVAEISAASNEQSTGIEEINRAITQMDEV 480 Query: 481 TQQNAALVEEAAAAAQSLQDQAARLSQVVSVFKIER 516 TQQNAALVEEAAAAAQSLQDQAARLSQVVSVFK++R Sbjct: 481 TQQNAALVEEAAAAAQSLQDQAARLSQVVSVFKLQR 516 >gi|300310474|ref|YP_003774566.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 515 Score = 667 bits (1721), Expect = 0.0, Method: Compositional matrix adjust. Identities = 354/515 (68%), Positives = 426/515 (82%) Query: 1 MNWFNNLKIAKKLILSFAAVIVLTVALGVFAIIELKVVNQASTDMASNWLPTIKAAQSIQ 60 M WF NL IAKKL LSFA VI LT+ G+FAI ELK VN+AS ++ S W+PT+ AA+ +Q Sbjct: 1 MIWFYNLNIAKKLALSFAVVIALTLLQGLFAIKELKQVNKASGEIVSKWMPTMDAARELQ 60 Query: 61 ASLPRMRISELQMITAVTPAEREDAIKAIKSRLDILTKQRAAYEALISEAEEKLAYDKFS 120 SLP +R++EL+++TAVTP ER A KAIK RLD LT+QRA +E +SE +EK Y +F Sbjct: 61 GSLPPLRLNELELVTAVTPQERAAANKAIKDRLDALTRQRAIFEQRMSEPQEKEQYAQFL 120 Query: 121 KSFASYLELDKKLAEISGAGKEEEARALFKGDSNKTFRSMLESMDEIIKINDAGSARSDQ 180 K+ +Y+++D++LAE++ + +E RALF GDS K +RSM+ ++D I+KIN +GSA++D+ Sbjct: 121 KNLTAYVKVDEQLAEMAANQQYDETRALFNGDSAKLYRSMVGNLDAIVKINTSGSAQADE 180 Query: 181 TANDVFNAARTWIIGLLATIVVIAFGLAAAVARAVSRPLNEAVSVAERVAQGDLTVQINT 240 A+ VF A+ WI+GLLA V+IA LA VA VSRPL EAV +A+RVA+GDLT++I Sbjct: 181 EASTVFRGAQRWIVGLLAATVLIASLLAFLVATNVSRPLKEAVQIAQRVARGDLTLRIRP 240 Query: 241 ASKDETGMLMHSLRTMNDSLHKIVSEVRYGTDAISTASQEIASGNLDLSSRTEQQAGSLE 300 A +DETG LM +LR MN+SL IVSEVR GTD I+TAS EIA GNLDLS+RTEQQAGSLE Sbjct: 241 AGRDETGALMEALRAMNESLRDIVSEVRQGTDTITTASHEIARGNLDLSNRTEQQAGSLE 300 Query: 301 ETASAMEELTATVKQNADNARQANQLAASASDIASQGGEVVSQVVQTMEGITESSSRIAD 360 ETASAMEELT+TV QNADNARQANQLAA+ASDIASQGGEVV QVVQTMEGITESS RIAD Sbjct: 301 ETASAMEELTSTVTQNADNARQANQLAATASDIASQGGEVVGQVVQTMEGITESSRRIAD 360 Query: 361 IITVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKQLIDD 420 II+VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA AAKEIK+LIDD Sbjct: 361 IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAGAAKEIKELIDD 420 Query: 421 SVEKVGAGSQLVERAGATMSDVVSSVRRVTGVVAEISAASSEQSTGIEEINRAVTQMDEV 480 SV+KV AGS LVERAG+TM++VV+SVRRVT VVAEISAA+ EQS GI E+N A+TQMDE Sbjct: 421 SVQKVSAGSALVERAGSTMTEVVASVRRVTDVVAEISAATQEQSGGINEVNLAITQMDET 480 Query: 481 TQQNAALVEEAAAAAQSLQDQAARLSQVVSVFKIE 515 TQQNAALVE+AAAAA SL+ QA+ L+ VV FK++ Sbjct: 481 TQQNAALVEQAAAAADSLKGQASNLAAVVGKFKLD 515 >gi|300312038|ref|YP_003776130.1| methyl-accepting chemotaxis transmembrane I protein [Herbaspirillum seropedicae SmR1] Length = 579 Score = 548 bits (1411), Expect = e-157, Method: Compositional matrix adjust. Identities = 309/516 (59%), Positives = 392/516 (75%) Query: 1 MNWFNNLKIAKKLILSFAAVIVLTVALGVFAIIELKVVNQASTDMASNWLPTIKAAQSIQ 60 M WF +L+I++KLI +F V+ + ALGVF+I +L VN AST++++NWLP+I+ +Q Sbjct: 1 MKWFYDLRISRKLITTFLVVVAMVAALGVFSIRQLDQVNSASTEISTNWLPSIRTLARLQ 60 Query: 61 ASLPRMRISELQMITAVTPAEREDAIKAIKSRLDILTKQRAAYEALISEAEEKLAYDKFS 120 ++ R+R ELQ I A E E+ + ++ +++ L +A Y ISE EEK Y + Sbjct: 61 LAMSRLRSFELQHILAKDAKEYEEVERGMQVQMNNLKTAQAEYVTQISEPEEKAIYPEVE 120 Query: 121 KSFASYLELDKKLAEISGAGKEEEARALFKGDSNKTFRSMLESMDEIIKINDAGSARSDQ 180 K A+++ K+ +S GK+EEAR L +G+S K +R+ L+ +D++ +ND G+ S++ Sbjct: 121 KLIATFVSEHDKIIALSRQGKDEEARNLQRGESTKAYRTSLQQIDKLAAVNDKGADISNK 180 Query: 181 TANDVFNAARTWIIGLLATIVVIAFGLAAAVARAVSRPLNEAVSVAERVAQGDLTVQINT 240 A+ ++ AR WII +A + +A LA V+R ++RPL EAVSVA+RVA GDLT +I Sbjct: 181 QADAIYAQARLWIIVTVAACIGLAMLLAVWVSRLIARPLEEAVSVAQRVAGGDLTTRIEP 240 Query: 241 ASKDETGMLMHSLRTMNDSLHKIVSEVRYGTDAISTASQEIASGNLDLSSRTEQQAGSLE 300 A KDETG L+ +L++MNDSL IV +VR GT I+TAS EIASGNLDLSSRTE+QA SLE Sbjct: 241 AGKDETGQLLVALKSMNDSLVGIVGQVRMGTQTITTASTEIASGNLDLSSRTEEQASSLE 300 Query: 301 ETASAMEELTATVKQNADNARQANQLAASASDIASQGGEVVSQVVQTMEGITESSSRIAD 360 ETASAMEELT+TVKQNADNARQANQLA SAS++ASQGG VV+QVV TM I SS +IAD Sbjct: 301 ETASAMEELTSTVKQNADNARQANQLAVSASEVASQGGAVVNQVVDTMGSINASSRKIAD 360 Query: 361 IITVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKQLIDD 420 II VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA AAKEIK+LI+ Sbjct: 361 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAGAAKEIKELIEG 420 Query: 421 SVEKVGAGSQLVERAGATMSDVVSSVRRVTGVVAEISAASSEQSTGIEEINRAVTQMDEV 480 SV +V GS+LVERAG TMS+VV SVRRVT +V EIS+AS EQS GIE++N A+ QMDEV Sbjct: 421 SVAQVDMGSKLVERAGITMSEVVQSVRRVTDIVGEISSASQEQSEGIEQVNLAIAQMDEV 480 Query: 481 TQQNAALVEEAAAAAQSLQDQAARLSQVVSVFKIER 516 TQQNAALVEEAAAAAQSLQ+QA L+Q V FK+E+ Sbjct: 481 TQQNAALVEEAAAAAQSLQEQAETLTQTVGFFKLEQ 516 >gi|300309735|ref|YP_003773827.1| methyl-accepting chemotaxis sensory transducer protein [Herbaspirillum seropedicae SmR1] Length = 567 Score = 517 bits (1331), Expect = e-148, Method: Compositional matrix adjust. Identities = 280/515 (54%), Positives = 379/515 (73%), Gaps = 1/515 (0%) Query: 1 MNWFNNLKIAKKLILSFAAVIVLTVALGVFAIIELKVVNQASTDMASNWLPTIKAAQSIQ 60 MNWF N +IA KL+L+FA V++LT LG+F+I++L VNQA+T++A+NWLP+I++ ++ Sbjct: 1 MNWFYNRRIATKLLLAFACVLLLTGGLGIFSIVQLHKVNQAATELATNWLPSIRSLNDMK 60 Query: 61 ASLPRMRISELQMITAVTPAEREDAIKAIKSR-LDILTKQRAAYEALISEAEEKLAYDKF 119 +L R+R ++ Q+ ++ A+ + ++ L+ L + R Y ISE EK + Sbjct: 61 VALSRVRANQAQLALYDGDEKQSSAVIGLMNKNLEALAEARKQYTGQISEPGEKALFPGV 120 Query: 120 SKSFASYLELDKKLAEISGAGKEEEARALFKGDSNKTFRSMLESMDEIIKINDAGSARSD 179 + ++ L AGK +EA+ L G + + + S+L +D++ ++N GS +S Sbjct: 121 NARIDKFIALHGDTLAAVRAGKLDEAKRLLLGPAFENYLSLLNDLDKLAQVNLDGSVQST 180 Query: 180 QTANDVFNAARTWIIGLLATIVVIAFGLAAAVARAVSRPLNEAVSVAERVAQGDLTVQIN 239 ++A ++ A+ W++ +L ++ LA +AR ++ PL A A +A GDLT I Sbjct: 181 RSAETTYDQAQVWVVAILIGALLAGLALALFIARVIATPLRSAGEFAHLIAAGDLTADIT 240 Query: 240 TASKDETGMLMHSLRTMNDSLHKIVSEVRYGTDAISTASQEIASGNLDLSSRTEQQAGSL 299 S DETG L +L MN SL +IVS+VR GTDAI+TAS +I+SGNLDLSSRTE+QA SL Sbjct: 241 ARSDDETGQLTAALAAMNTSLRRIVSQVRSGTDAIATASGQISSGNLDLSSRTEEQASSL 300 Query: 300 EETASAMEELTATVKQNADNARQANQLAASASDIASQGGEVVSQVVQTMEGITESSSRIA 359 EETASAMEELT+TV+QNA+NARQANQLA SAS IA +GG+VVSQV++TM I SS +I Sbjct: 301 EETASAMEELTSTVRQNAENARQANQLALSASTIAEEGGKVVSQVIETMGSIDASSKKIV 360 Query: 360 DIITVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKQLID 419 DII+VID IAFQTNILALNAAVEAARAGEQGRGFAVVA+EVRSLAQRSA AAKEIK LID Sbjct: 361 DIISVIDSIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSATAAKEIKTLID 420 Query: 420 DSVEKVGAGSQLVERAGATMSDVVSSVRRVTGVVAEISAASSEQSTGIEEINRAVTQMDE 479 +SV++VG GS LV++AG T+S+VVSSV+RVT V++EISAAS EQ+ GIE++N+A+TQMDE Sbjct: 421 NSVQQVGLGSGLVQKAGVTISEVVSSVQRVTDVMSEISAASGEQTQGIEQVNQAITQMDE 480 Query: 480 VTQQNAALVEEAAAAAQSLQDQAARLSQVVSVFKI 514 VTQQNAALVEEAA+A+QSL QA RLS++V VF++ Sbjct: 481 VTQQNAALVEEAASASQSLSHQAQRLSELVGVFRL 515 >gi|300313024|ref|YP_003777116.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 571 Score = 509 bits (1310), Expect = e-145, Method: Compositional matrix adjust. Identities = 286/515 (55%), Positives = 374/515 (72%) Query: 1 MNWFNNLKIAKKLILSFAAVIVLTVALGVFAIIELKVVNQASTDMASNWLPTIKAAQSIQ 60 MNWF NLKIA KL +F V+V + LG F+ +EL VN++STD+A NWLP+I A + Sbjct: 1 MNWFYNLKIAHKLNAAFLVVLVFIIGLGGFSSLELAAVNKSSTDIARNWLPSIDALSKMS 60 Query: 61 ASLPRMRISELQMITAVTPAEREDAIKAIKSRLDILTKQRAAYEALISEAEEKLAYDKFS 120 +L R R ++Q + E + + + ++ L K+ A Y L+SE EK Y + Sbjct: 61 LALARSRSFDMQQLLTADKQEEKASRERADKQMATLLKEVARYGKLVSEPREKELYPEIE 120 Query: 121 KSFASYLELDKKLAEISGAGKEEEARALFKGDSNKTFRSMLESMDEIIKINDAGSARSDQ 180 ++ A Y E ++++ + +++ A AL S +R + E + E+ ++N G+A SD Sbjct: 121 RNIALYKEAHERMSALFEQDQKQAAHALMNSTSTPVYRKLQEQIGELSEVNSKGAALSDA 180 Query: 181 TANDVFNAARTWIIGLLATIVVIAFGLAAAVARAVSRPLNEAVSVAERVAQGDLTVQINT 240 A+ ++ A I+ L+ T VV+A L+ +AR V+RPL AV +A +VA GDLT I T Sbjct: 181 DADHIYGQANMAILALVTTCVVLAMALSWWIARLVARPLANAVDIARQVAAGDLTADIPT 240 Query: 241 ASKDETGMLMHSLRTMNDSLHKIVSEVRYGTDAISTASQEIASGNLDLSSRTEQQAGSLE 300 A +DETG L+ +LR MN +L IV EVR GTD I+TAS EIA+GN+DLSSRTEQQAG+LE Sbjct: 241 AHRDETGQLLEALRQMNGNLLNIVREVRQGTDTITTASAEIATGNMDLSSRTEQQAGALE 300 Query: 301 ETASAMEELTATVKQNADNARQANQLAASASDIASQGGEVVSQVVQTMEGITESSSRIAD 360 ETASAMEELT+TV+QN+DNARQANQLA +AS++A GG VV +VV TM I +SS +I D Sbjct: 301 ETASAMEELTSTVRQNSDNARQANQLAVNASEVAQAGGTVVGKVVATMSAINDSSRKIVD 360 Query: 361 IITVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKQLIDD 420 II VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSAAAA EIK LIDD Sbjct: 361 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAAAAHEIKALIDD 420 Query: 421 SVEKVGAGSQLVERAGATMSDVVSSVRRVTGVVAEISAASSEQSTGIEEINRAVTQMDEV 480 SV KV GS+LV+ AG TM++VV+SV+RV+ +VAEI+AA +EQ+ GIE+IN AV QMDE Sbjct: 421 SVAKVDTGSKLVDEAGQTMNEVVASVKRVSDIVAEITAAGAEQTQGIEQINNAVVQMDEN 480 Query: 481 TQQNAALVEEAAAAAQSLQDQAARLSQVVSVFKIE 515 TQQNAALVE+AAAAA++LQ+QA RLS+ VSVF+++ Sbjct: 481 TQQNAALVEQAAAAAKALQEQAGRLSETVSVFRLD 515 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.311 0.123 0.310 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,001,308 Number of extensions: 31067 Number of successful extensions: 499 Number of sequences better than 1.0e-08: 70 Number of HSP's gapped: 253 Number of HSP's successfully gapped: 72 Length of query: 516 Length of database: 1,619,870 Length adjustment: 89 Effective length of query: 427 Effective length of database: 1,198,455 Effective search space: 511740285 Effective search space used: 511740285 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 133 (55.8 bits)