BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4480.p (484 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313895|ref|YP_003777987.1| two-component system sensor his... 849 0.0 gi|300311272|ref|YP_003775364.1| two component sensor histidine ... 142 8e-35 gi|300313246|ref|YP_003777338.1| two component transmembrane sen... 136 5e-33 gi|300311514|ref|YP_003775606.1| two component sensor histidine ... 122 5e-29 gi|300310593|ref|YP_003774685.1| phosphate regulon two-component... 118 1e-27 >gi|300313895|ref|YP_003777987.1| two-component system sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 475 Score = 849 bits (2193), Expect = 0.0, Method: Compositional matrix adjust. Identities = 418/471 (88%), Positives = 436/471 (92%) Query: 10 LSDRFFYRANIRLKLFYAMLALIVAVIAAINGAGHYIFNRDFLGYLNEQAQQRMEDMVPR 69 +SDRFFYRANIRLKLFYAMLALIVA+IAAINGAGHYIFNRDFLGYLNEQAQQRMEDMVPR Sbjct: 1 MSDRFFYRANIRLKLFYAMLALIVALIAAINGAGHYIFNRDFLGYLNEQAQQRMEDMVPR 60 Query: 70 LEQAYREHGSWDFIRGNPRLWFELMKPAIVEHIGVTTRPMPPMTASDLTGAALRFSLLDA 129 LEQAYREHGSWDFIR NPR WFELMKPAIVEH G P TASDLTGA LRFSLLDA Sbjct: 61 LEQAYREHGSWDFIRDNPRAWFELMKPAIVEHNGAARSAGPTFTASDLTGATLRFSLLDA 120 Query: 130 RRQFVIGYPNLGPDARLRPLLQDDVIVGWVAQTPFESVIGAVDLRFQQSQFLAQLIIALV 189 R+ VIGYPN+GPDARLRPLLQDDVI+GWVAQTPFESVIGA+DLRFQQSQF AQ+IIA+V Sbjct: 121 SRRPVIGYPNVGPDARLRPLLQDDVIIGWVAQTPFESVIGALDLRFQQSQFAAQIIIAVV 180 Query: 190 AVMLAAFLVVRISGVLTRPLTRVARATHRLAGGDYAIRVEVESGDEVGMLAQDFNQLAMT 249 AVMLAAFLVVRISGVLTRPLTRVARATHRLA GDYAIRVEVESGDEVGMLAQDFNQLAMT Sbjct: 181 AVMLAAFLVVRISGVLTRPLTRVARATHRLASGDYAIRVEVESGDEVGMLAQDFNQLAMT 240 Query: 250 LERNEKLRREFMADVSHELRTPLGILNGQLEALEDGVLQPDAQTLRSLKSEVEHLNKLVG 309 LERNEKLRREFMADVSHELRTPL ILNGQLEALEDGVLQPDAQTLRSLKSEVEHLNKLVG Sbjct: 241 LERNEKLRREFMADVSHELRTPLAILNGQLEALEDGVLQPDAQTLRSLKSEVEHLNKLVG 300 Query: 310 DLYDLSLADAGALTYRHADIDLTPLLQDSAATYAERFNQRGMSLTTALPAAMLVHADGAR 369 DLYDLSLADAGALTYR ADIDL PLL+DSAA Y++RF+QRGM L+ LPA+M VH D AR Sbjct: 301 DLYDLSLADAGALTYRRADIDLAPLLRDSAALYSDRFSQRGMRLSCELPASMPVHGDAAR 360 Query: 370 LQQLFNNLFENSLRYTDTGGRLQVHAQLQQQQWHLFFDDSEPGVPPEVMARLFERFFRVE 429 LQQL +NLFENSLRYTD GGRLQVHA LQQQ WHL FDDSEPGVPPEVMARLFERFFRVE Sbjct: 361 LQQLLSNLFENSLRYTDAGGRLQVHAHLQQQHWHLVFDDSEPGVPPEVMARLFERFFRVE 420 Query: 430 TSRNRASGGAGLGLAICRRIIDAHQGTIGASDSPLGGLRVSVILPARLDGE 480 SRNRASGGAGLGLAICRRI+DAHQGTIGAS SPLGGLRV V+LPARL+ E Sbjct: 421 ASRNRASGGAGLGLAICRRIVDAHQGTIGASASPLGGLRVVVVLPARLEDE 471 >gi|300311272|ref|YP_003775364.1| two component sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 401 Score = 142 bits (357), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 105/301 (34%), Positives = 158/301 (52%), Gaps = 2/301 (0%) Query: 177 QSQFLAQLIIALVAVMLAAFLVVRISGVLTRPLTRVARATHRLAGGDYAIRV--EVESGD 234 Q+ L ++ L+A+ L + +S L+R L VA A RLA GD++ R + Sbjct: 93 QADLLWFSLLVLIALPLIVGAGLMLSLRLSRHLDAVAVAARRLAAGDFSARALSCKQVPA 152 Query: 235 EVGMLAQDFNQLAMTLERNEKLRREFMADVSHELRTPLGILNGQLEALEDGVLQPDAQTL 294 + L +D N++A LER E+ A ++HELRTPL +L+ + DG+ Q L Sbjct: 153 ALDALMRDVNEMAERLERRERELHASSAAIAHELRTPLTAAKARLQGIMDGIFDRSPQQL 212 Query: 295 RSLKSEVEHLNKLVGDLYDLSLADAGALTYRHADIDLTPLLQDSAATYAERFNQRGMSLT 354 + +++ LN+L+ DLY LSL AG L + L PLL++ A A MS Sbjct: 213 SMIMRQLDQLNRLISDLYLLSLVSAGQLALVRSQFQLRPLLEERLAWAAPSLRLLPMSTA 272 Query: 355 TALPAAMLVHADGARLQQLFNNLFENSLRYTDTGGRLQVHAQLQQQQWHLFFDDSEPGVP 414 + ++AD RL Q + L +N+LRY +G L + A L Q H+ +D PG Sbjct: 273 LYCCEHLPLNADRDRLGQAISILIDNALRYAASGKLLTISAGLHDGQIHIDVEDDGPGFA 332 Query: 415 PEVMARLFERFFRVETSRNRASGGAGLGLAICRRIIDAHQGTIGASDSPLGGLRVSVILP 474 PE + +RF+R E SR+R +GG+GLGLA+ I +AH G + + P GG R+ + LP Sbjct: 333 PEHLELACDRFWRAEHSRSRHAGGSGLGLAVAVAICEAHGGKLSVHNRPAGGARMHLELP 392 Query: 475 A 475 A Sbjct: 393 A 393 >gi|300313246|ref|YP_003777338.1| two component transmembrane sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 361 Score = 136 bits (342), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 95/293 (32%), Positives = 143/293 (48%), Gaps = 4/293 (1%) Query: 184 LIIALVAVMLAAFLVVRISGVLTRPLTRVARATHRLAGGDYAIRVEVESG--DEVGMLAQ 241 L+ L+ + +A ++ VR+S + PL VA + R+A GD + R E DE L Sbjct: 70 LVTTLIGLSIALWVAVRLSRRILTPLNSVATSLRRVAQGDLSARAAAERQPLDEAWQLIN 129 Query: 242 DFNQLAMTLERNEKLRREFMADVSHELRTPLGILNGQLEALEDGVLQPDAQTLRSLKSEV 301 DFN +A LER ++ R + A ++HELRTP+ IL G+L+ L DGV QP+ SL ++V Sbjct: 130 DFNAMAERLERVQQERIFWNAAIAHELRTPVTILRGRLQGLSDGVFQPEPALFSSLLAQV 189 Query: 302 EHLNKLVGDLYDLSLADAGALTYRHADIDLTPLLQDSAATYAERFNQRGMSLTTALPAAM 361 E L +L+ DL + LA++G L + + DL + ++G L Sbjct: 190 EGLGRLIEDLRIVGLAESGHLRVQLQETDLQADIMTVLKACEPALQEKGFRLLLE-TGVQ 248 Query: 362 LVHADGARLQQLFNNLFENSLRYTDTGGRLQVHAQLQQQQWHLFFDDSEPGVPPEVMARL 421 D R++Q L EN L++ G L++ + L +DS PG+ + Sbjct: 249 RSRCDPVRIRQALLALLENVLQHASPGP-LRISTRSLAGMHSLCVEDSGPGIAASDAQMI 307 Query: 422 FERFFRVETSRNRASGGAGLGLAICRRIIDAHQGTIGASDSPLGGLRVSVILP 474 F+ F R + + G+GLGLA+ R I AH GT S LGG V P Sbjct: 308 FDAFHRGARAGDAQQKGSGLGLAVVRTIASAHHGTADCRASELGGACFEVRWP 360 >gi|300311514|ref|YP_003775606.1| two component sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 473 Score = 122 bits (307), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 89/296 (30%), Positives = 148/296 (50%), Gaps = 9/296 (3%) Query: 184 LIIALVAVMLAAFLVVRISGVLTRPLTRVARATHRLAGGDYAIRVE---VESGDEVGMLA 240 +++AL+A ++ A L ++ + P+ + A ++ A G+ + +E DE+ L Sbjct: 168 IVVALLASLVFALL---LAWYFSHPIGHLKNAFNQAANGNLDLELEPVMSARNDELADLG 224 Query: 241 QDFNQLAMTLERNEKLRREFMADVSHELRTPLGILNGQLEALEDGVLQPDAQTLRSLKSE 300 +DF+ + L + +R + DVSHELR+P+ L + TL ++ E Sbjct: 225 RDFDVMTAKLRTLMESQRRLLHDVSHELRSPIARLQVAIGLARVQDKDKLDLTLERIERE 284 Query: 301 VEHLNKLVGDLYDLSLADAGALTYRHADIDLTPLLQDSAATYAERFNQRGMSLTTALPAA 360 ++KLVG+L LS +A I + +L D + G + L Sbjct: 285 SVRMDKLVGELLTLSRLEANVPGSMEEPIAIEAMLGDMINDASFEAEAIGKHVDDQLDCR 344 Query: 361 MLVHADGARLQQLFNNLFENSLRYTDTGGRLQVHAQLQQ--QQWHLFFDDSEPGVPPEVM 418 + V + L + N+ N++++T G +Q+H QL + + HL D PGVP E M Sbjct: 345 VQVKGNPELLYRAIENVLRNAIKHTAPGTTVQIHTQLDEINKLLHLSILDRGPGVPEEEM 404 Query: 419 ARLFERFFRVETSRNRASGGAGLGLAICRRIIDAHQGTIGASDSPLGGLRVSVILP 474 +FE FFR +++ +SG GLGL+I RRI++AHQG I A++ GGLRV + LP Sbjct: 405 NSIFELFFRSSRTKSNSSG-HGLGLSIARRIVEAHQGFIQAANRSNGGLRVDITLP 459 >gi|300310593|ref|YP_003774685.1| phosphate regulon two-component sensor kinase transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 436 Score = 118 bits (295), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 75/237 (31%), Positives = 123/237 (51%), Gaps = 23/237 (9%) Query: 251 ERNEKLRREFMADVSHELRTPLGILNGQLEALEDGVLQPDAQT------LRSLKSEVEHL 304 ER + +RR+F+A+ SHELRTPL ++NG LE + QP+ + L+ + + + + Sbjct: 200 ERIDMMRRDFVANASHELRTPLTVINGFLEI---ALAQPNLEEGTRMAHLKLMTEQGQRM 256 Query: 305 NKLVGDLYDLSLADAGALTYRHADIDLTPLLQDSAATYAERFNQRGMSLTTALPAAML-- 362 L+ D+ L+ ++ R + + PLL ER + G +L+ +L Sbjct: 257 QNLIDDMLTLTRLESIDYPLRTEVLRVRPLL--------ERIAEEGRALSAGKHEIVLTI 308 Query: 363 ----VHADGARLQQLFNNLFENSLRYTDTGGRLQVHAQLQQQQWHLFFDDSEPGVPPEVM 418 + + L+ F NL N++RYT GGR+ + Q +Q H D+ G+ PE + Sbjct: 309 DGPDLKGNAEELRSAFTNLVTNAVRYTPEGGRISLRWQSDEQGAHFAVQDTGIGISPEHI 368 Query: 419 ARLFERFFRVETSRNRASGGAGLGLAICRRIIDAHQGTIGASDSPLGGLRVSVILPA 475 +RL ERF+RV+ SR+R + G GLGLAI R ++ H T+ + P G +V P+ Sbjct: 369 SRLTERFYRVDKSRSRETQGTGLGLAIVRHVLLRHHATLEIASVPDHGSTFTVHFPS 425 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.324 0.138 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,450,436 Number of extensions: 59091 Number of successful extensions: 352 Number of sequences better than 1.0e-08: 40 Number of HSP's gapped: 293 Number of HSP's successfully gapped: 40 Length of query: 484 Length of database: 1,619,870 Length adjustment: 89 Effective length of query: 395 Effective length of database: 1,198,455 Effective search space: 473389725 Effective search space used: 473389725 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 132 (55.5 bits)