BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4478.p (1051 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313893|ref|YP_003777985.1| cation/multidrug efflux pump pr... 1990 0.0 gi|300310690|ref|YP_003774782.1| cation/multidrug efflux pump pr... 1222 0.0 gi|300309819|ref|YP_003773911.1| acriflavin resistance transmemb... 1165 0.0 gi|300313244|ref|YP_003777336.1| multidrug efflux system transme... 987 0.0 gi|300309657|ref|YP_003773749.1| cation/multidrug efflux pump pr... 691 0.0 >gi|300313893|ref|YP_003777985.1| cation/multidrug efflux pump protein [Herbaspirillum seropedicae SmR1] Length = 1051 Score = 1990 bits (5155), Expect = 0.0, Method: Compositional matrix adjust. Identities = 979/1051 (93%), Positives = 1028/1051 (97%) Query: 1 MARFFIDRPIFAWVMAIIIMLGGMMSIRSLSLEQYPNIAPPQVNIKATYTGASAKTLEDS 60 MARFFIDRPIFAWV+AIIIMLGGMMSIRSLSLEQYP+IAPP+VNIKATYTGASAKTLEDS Sbjct: 1 MARFFIDRPIFAWVIAIIIMLGGMMSIRSLSLEQYPDIAPPKVNIKATYTGASAKTLEDS 60 Query: 61 VTQIIEQQMKGLDNLQYMSASSSSAGSSTVTLTFTAGTNPDVAQMQVQNKLQQVTARLPQ 120 VTQ+IEQQMKGLDNLQYMSASSSSAGS+TV+LTFTAGTNPDVAQMQVQNKLQQVTARLPQ Sbjct: 61 VTQVIEQQMKGLDNLQYMSASSSSAGSATVSLTFTAGTNPDVAQMQVQNKLQQVTARLPQ 120 Query: 121 AVQNNGVTVTKASTDILMVLSLSSDDPRITSIDIGDFINSSLTDQISRVPGVGDVTAFGT 180 AVQNNGVTVTKASTDILMVLSL+SDDPRITSIDIGDFI+S+LTDQISRV GVGDVTAFGT Sbjct: 121 AVQNNGVTVTKASTDILMVLSLTSDDPRITSIDIGDFISSTLTDQISRVEGVGDVTAFGT 180 Query: 181 NYAMRIWLDPAKLQKYALMPSDITSALEAQNTEVSAGEIGALPAQPGQQINATITARSKL 240 NYAMRIW+DPAKLQKYALMPSDITSAL+AQNTEVSAGEIGALPAQPGQQINATITARSKL Sbjct: 181 NYAMRIWIDPAKLQKYALMPSDITSALQAQNTEVSAGEIGALPAQPGQQINATITARSKL 240 Query: 241 TTAEEFRNIVVKSSSDGSVVKMSDVARVELGGESYQTASRQDGKPSSALAIQLATGANAL 300 TT +EFRNI+VKSS DGSVVK+SDVARVELGGESYQ AS+Q+GKPSSALAIQLATGANAL Sbjct: 241 TTPDEFRNIIVKSSVDGSVVKLSDVARVELGGESYQVASQQNGKPSSALAIQLATGANAL 300 Query: 301 STADAVKKKMAELEPYFPASMKLKTHIAYDTTPFVRVSLEEVVKTLLEAIVLVVLIMYLF 360 +TADAVKKK+AELEPYFPASMKLKT+IAYDTTPFVRVSLEEVVKTL+EAIVLVVLIMYLF Sbjct: 301 ATADAVKKKLAELEPYFPASMKLKTNIAYDTTPFVRVSLEEVVKTLIEAIVLVVLIMYLF 360 Query: 361 LQNIRATFIPAITVPVVLLGTFGILAMFGYSINTLTMFGMVLAIGLLVDDAIVVVENVER 420 LQNIRATFIPAITVPVVLLGTFGILAMFGYSINTLTMFGMVLAIGLLVDDAIVVVENVER Sbjct: 361 LQNIRATFIPAITVPVVLLGTFGILAMFGYSINTLTMFGMVLAIGLLVDDAIVVVENVER 420 Query: 421 LMSEEKLSPKEATRKSMQEITGALVGIAMVLSAVFIPMAFFGGSTGVIYRQFSITIVSAM 480 LMSEEKLSPKEATRKSMQEITGALVGIAMVLSAVFIPMAFFGGSTGVIYRQFSITIVSAM Sbjct: 421 LMSEEKLSPKEATRKSMQEITGALVGIAMVLSAVFIPMAFFGGSTGVIYRQFSITIVSAM 480 Query: 481 ALSVTVALTLTPALCASLLKPHPGGHVPHGKFFTWFNRSFDRNATRYRGGVGGLLKRGKR 540 ALSV VALTLTPALCA+LLKPH GGHV G+FFTWFNRSFDR+ATRY+GGV GLLKRGKR Sbjct: 481 ALSVMVALTLTPALCATLLKPHAGGHVQQGRFFTWFNRSFDRSATRYQGGVAGLLKRGKR 540 Query: 541 GLLMYALIAVAMAVLFMRLPTSFLPEEDQGVLMAQIQLPTGATAEQTATVVKTVQDYFLN 600 GLLMYALIAVAMAVLFMRLPTSFLPEEDQGVLMAQIQLPTGATAEQTATVVKTVQ+YF+N Sbjct: 541 GLLMYALIAVAMAVLFMRLPTSFLPEEDQGVLMAQIQLPTGATAEQTATVVKTVQEYFMN 600 Query: 601 KPESVESVLAIVGSGVGGNSQNSARAFIRLKQWDERTAADQSALALVRRANADLSKIRGA 660 KPESVESVLAIVG+GVGGNSQN ARAFIRLK W++RT A QSA LVRRANADLSKIRGA Sbjct: 601 KPESVESVLAIVGAGVGGNSQNGARAFIRLKDWEQRTGAGQSASELVRRANADLSKIRGA 660 Query: 661 RVFLMNPPVVRGLGQSSGFDFELKDVGGVGHDALLKARDQFLRAARSSAVLANVRTTGLD 720 RVFLMNPP VRGLGQSSGFD ELKDVGGVGHDALL+ARDQFL+ ARS+A+LANVRTTGLD Sbjct: 661 RVFLMNPPAVRGLGQSSGFDLELKDVGGVGHDALLQARDQFLQLARSNALLANVRTTGLD 720 Query: 721 DTPQLRVAIDDRKADALSVATSDINSSLATVMGGTYVNDFLSNGRVKKVYVQGDAPFRMQ 780 DTPQLRVAIDDRKADALS+ATSDIN++LAT MGGTYVNDFLSNGRVKKVYVQGD+ FRMQ Sbjct: 721 DTPQLRVAIDDRKADALSIATSDINATLATAMGGTYVNDFLSNGRVKKVYVQGDSAFRMQ 780 Query: 781 AEDLNRWYVRNSASQMVPFSAFMTSKWSYGPSLLERYNGVSSFEIVGEPAAGVSSGTAMA 840 A+DLNRWYVRN+ASQMVPF+AFM+S+W+YGPSLLERYNGVSSFEIVGEPAAGVSSGTAMA Sbjct: 781 ADDLNRWYVRNAASQMVPFAAFMSSQWTYGPSLLERYNGVSSFEIVGEPAAGVSSGTAMA 840 Query: 841 EVEKLAAQLPAGIGFEWTGSSYQERLSGNQAPMLYAISILFVFLCLAALYESWSVPFAVI 900 EVEKL AQLPAGIGFEWTGSSYQERLSGNQAPMLYAISILFVFLCLAALYESWSVPFAVI Sbjct: 841 EVEKLVAQLPAGIGFEWTGSSYQERLSGNQAPMLYAISILFVFLCLAALYESWSVPFAVI 900 Query: 901 LAVPLGIIGTVLLTGIFGMSNDVYFQVGLLTTVGLSAKNAILIVEFAKQLHESGKSLWDA 960 LAVPLGIIGTVLLTGIFGMSNDVYFQVGLLTTVGLSAKNAILIVEFAKQLHESGKSLW+A Sbjct: 901 LAVPLGIIGTVLLTGIFGMSNDVYFQVGLLTTVGLSAKNAILIVEFAKQLHESGKSLWEA 960 Query: 961 TLEAVQLRLRPILMTSLAFVFGVLPLAVATGAGSASRRAIGTGVMGGMLSATMLGIFFVP 1020 TLEAVQLRLRPILMTSLAF+FGVLPLAVA+GAGSASRRAIGTGV+GGMLSAT+LGIFFVP Sbjct: 961 TLEAVQLRLRPILMTSLAFMFGVLPLAVASGAGSASRRAIGTGVLGGMLSATLLGIFFVP 1020 Query: 1021 LFYYLIGTWLDRRAANKPRQDDDHAIQKEGV 1051 LFYYLIG WLDRRAA KPRQDDDHA+QKEGV Sbjct: 1021 LFYYLIGAWLDRRAARKPRQDDDHAMQKEGV 1051 >gi|300310690|ref|YP_003774782.1| cation/multidrug efflux pump protein [Herbaspirillum seropedicae SmR1] Length = 1049 Score = 1222 bits (3161), Expect = 0.0, Method: Compositional matrix adjust. Identities = 617/1042 (59%), Positives = 783/1042 (75%), Gaps = 5/1042 (0%) Query: 1 MARFFIDRPIFAWVMAIIIMLGGMMSIRSLSLEQYPNIAPPQVNIKATYTGASAKTLEDS 60 MARFFIDRPIFAWV+AII+ML G++S+ +L + QYP IAPP + I A Y GASAKTLED+ Sbjct: 1 MARFFIDRPIFAWVLAIIVMLAGIVSVLTLPIAQYPAIAPPAIAITANYPGASAKTLEDT 60 Query: 61 VTQIIEQQMKGLDNLQYMSASSSSAGSSTVTLTFTAGTNPDVAQMQVQNKLQQVTARLPQ 120 VTQIIEQ+MKGLD L YM+++S S+GS T+TLTF GTNPD AQ+QVQNKL T LP Sbjct: 61 VTQIIEQKMKGLDRLSYMASTSESSGSVTITLTFENGTNPDTAQVQVQNKLSLATPLLPS 120 Query: 121 AVQNNGVTVTKASTDILMVLSLSSDDPRITSIDIGDFINSSLTDQISRVPGVGDVTAFGT 180 VQ G+TVTK++T+ L VL+ +S+D ++ D+ D++ +++ D ISRV GVGD T FG+ Sbjct: 121 EVQQQGITVTKSATNFLNVLAFTSEDGSMSGSDLSDYVAANVQDAISRVEGVGDTTLFGS 180 Query: 181 NYAMRIWLDPAKLQKYALMPSDITSALEAQNTEVSAGEIGALPAQPGQQINATITARSKL 240 YAMRIWLDP KL Y L P D+ +A++AQN +VS+G++G LPA QQINATITA+++L Sbjct: 181 QYAMRIWLDPNKLNSYGLTPLDVKNAIQAQNAQVSSGQLGGLPAAENQQINATITAQTRL 240 Query: 241 TTAEEFRNIVVKSSSDGSVVKMSDVARVELGGESYQTASRQDGKPSSALAIQLATGANAL 300 TA++F+NIV+++ + G+ VK+ DVAR+ELG ESY + R +GKP++ LAI+LATGANAL Sbjct: 241 RTADQFQNIVLRTLTGGAQVKLRDVARIELGSESYTSVGRYNGKPAAGLAIKLATGANAL 300 Query: 301 STADAVKKKMAELEPYFPASMKLKTHIAYDTTPFVRVSLEEVVKTLLEAIVLVVLIMYLF 360 T A+ K++AELE +FP MK++ YDTTPFVR+S+EEVV+TL+EA+VLV L+MYLF Sbjct: 301 DTVKAIDKRVAELEKFFPTGMKVQK--PYDTTPFVRISIEEVVRTLIEAVVLVFLVMYLF 358 Query: 361 LQNIRATFIPAITVPVVLLGTFGILAMFGYSINTLTMFGMVLAIGLLVDDAIVVVENVER 420 LQN RAT IP I VPVVLLGTFG+LA+FG++INTLTMF MVLAIGLLVDDAIVVVENVER Sbjct: 359 LQNFRATLIPTIAVPVVLLGTFGVLAVFGFTINTLTMFAMVLAIGLLVDDAIVVVENVER 418 Query: 421 LMSEEKLSPKEATRKSMQEITGALVGIAMVLSAVFIPMAFFGGSTGVIYRQFSITIVSAM 480 +MSEE L PK+ATRKSM +I+GALVG+A+VL+AVF+PMAFF GSTGVIYRQFSITIVSAM Sbjct: 419 VMSEEGLPPKQATRKSMGQISGALVGVALVLAAVFVPMAFFSGSTGVIYRQFSITIVSAM 478 Query: 481 ALSVTVALTLTPALCASLLKPHPGGH-VPHGKFFTWFNRSFDRNATRYRGGVGGLLKRGK 539 LSV VAL LTPALCA+LLKP GH + FF WFNR FDR+ RY+G V +L RG Sbjct: 479 TLSVLVALVLTPALCATLLKPAAKGHALATTGFFGWFNRQFDRSNIRYQGIVRHMLGRGW 538 Query: 540 RGLLMYALIAVAMAVLFMRLPTSFLPEEDQGVLMAQIQLPTGATAEQTATVVKTVQDYFL 599 R + YA++ + FM+LP FLP+EDQG L A +QLP+GAT +T V++ V+ +FL Sbjct: 539 RYMAAYAVLLALVVAGFMKLPVGFLPDEDQGTLFAIMQLPSGATKARTDEVIRQVEQHFL 598 Query: 600 -NKPESVESVLAIVGSGVGGNSQNSARAFIRLKQWDERTAADQSALALVRRANADLSKIR 658 ++ E+V V A+ G G+ QN AFI+LK WDER S + +A A + IR Sbjct: 599 VDQKEAVSGVFAVSGFSFAGSGQNMGFAFIKLKPWDERKGPGLSVTDVAAKAGAAFANIR 658 Query: 659 GARVFLMNPPVVRGLGQSSGFDFELKDVGGVGHDALLKARDQFLRAARSSAVLANVRTTG 718 ARVF PP V LG ++GFD LKD +GH AL++AR+Q L L VR G Sbjct: 659 DARVFAFAPPAVSELGNATGFDLMLKDEANLGHAALMQARNQLLGELMQDKRLVAVRPNG 718 Query: 719 LDDTPQLRVAIDDRKADALSVATSDINSSLATVMGGTYVNDFLSNGRVKKVYVQGDAPFR 778 L+DTP+ R+++D KA AL VA SDIN ++AT G +YVNDF+ GRVKKV +QGDA +R Sbjct: 719 LEDTPEFRLSVDTDKAGALGVAMSDINDTIATAWGSSYVNDFIDKGRVKKVMLQGDAQYR 778 Query: 779 MQAEDLNRWYVRNSASQMVPFSAFMTSKWSYGPSLLERYNGVSSFEIVGEPAAG-VSSGT 837 M D++RWYVRNSA MVPFSAF T+ W+ G LERYNGV S EI+G G SSG Sbjct: 779 MLPSDVDRWYVRNSAGTMVPFSAFSTASWTSGSPRLERYNGVPSMEILGMALPGAASSGE 838 Query: 838 AMAEVEKLAAQLPAGIGFEWTGSSYQERLSGNQAPMLYAISILFVFLCLAALYESWSVPF 897 AMA VE A++P GIG+EWTG S QE+ S + +LY +SIL VFL LAALYESW+VPF Sbjct: 839 AMAIVEAALAKMPPGIGYEWTGLSLQEKASSGKTGILYGVSILIVFLALAALYESWAVPF 898 Query: 898 AVILAVPLGIIGTVLLTGIFGMSNDVYFQVGLLTTVGLSAKNAILIVEFAKQLHESGKSL 957 +VIL VPLG+ G +L + NDVYFQVGLLTT+GL+ KNAILIVEFAK L+E GKSL Sbjct: 899 SVILVVPLGVFGALLGAMLTWKMNDVYFQVGLLTTIGLACKNAILIVEFAKDLYEHGKSL 958 Query: 958 WDATLEAVQLRLRPILMTSLAFVFGVLPLAVATGAGSASRRAIGTGVMGGMLSATMLGIF 1017 +AT+EAV++RLRPILMTSLAF+ GVLP+ + +GAG+ ++ A+GT V+GGMLS T+L +F Sbjct: 959 VEATMEAVRMRLRPILMTSLAFILGVLPMVLGSGAGAGAQHALGTAVIGGMLSGTVLAVF 1018 Query: 1018 FVPLFYYLIGTWLDRRAANKPR 1039 FVPLF+ +I T R+ A+ P+ Sbjct: 1019 FVPLFFVIIMTLFGRKPADAPQ 1040 >gi|300309819|ref|YP_003773911.1| acriflavin resistance transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 1048 Score = 1165 bits (3014), Expect = 0.0, Method: Compositional matrix adjust. Identities = 575/1047 (54%), Positives = 766/1047 (73%), Gaps = 8/1047 (0%) Query: 1 MARFFIDRPIFAWVMAIIIMLGGMMSIRSLSLEQYPNIAPPQVNIKATYTGASAKTLEDS 60 M +FFIDRP+FAWV+AI IML G ++I L + QYPNIAPP + + ATY GA+A+TL+DS Sbjct: 1 MGKFFIDRPVFAWVLAIFIMLAGALAITGLPVSQYPNIAPPTIVVTATYPGATAQTLDDS 60 Query: 61 VTQIIEQQMKGLDNLQYMSASSSSAGSSTVTLTFTAGTNPDVAQMQVQNKLQQVTARLPQ 120 VT +IEQ+M G D LQY+ + S + G +T+TF+ TNPD+A + VQN+L++V ARLP Sbjct: 61 VTSLIEQEMNGADGLQYIESQSQANGQVQITITFSPETNPDLAAVDVQNRLKRVEARLPA 120 Query: 121 AVQNNGVTVTKASTDILMVLSLSSDDPRITSIDIGDFINSSLTDQISRVPGVGDVTAFGT 180 AV GV VTK+ ++ L+ + LSS D ++ + +GD+++ ++ ++I RVPGVG FGT Sbjct: 121 AVTQQGVQVTKSRSNFLLFIGLSSTDGKLDPVALGDYLSRNVLNEIKRVPGVGQAQLFGT 180 Query: 181 NYAMRIWLDPAKLQKYALMPSDITSALEAQNTEVSAGEIGALPAQPGQQINATITARSKL 240 AMRIW+DP KL L P+D+T+A++AQN V+ G +GALP+ QQI AT+ +L Sbjct: 181 ERAMRIWIDPNKLIGLNLTPADVTAAIQAQNALVAGGTLGALPSPGTQQIAATVVVNGQL 240 Query: 241 TTAEEFRNIVVKSSSDGSVVKMSDVARVELGGESYQTASRQDGKPSSALAIQLATGANAL 300 T+ E+F NI+++++++G+ V++ DVARVE+GG+SY T+ R DGKPSS + +QL+ ANAL Sbjct: 241 TSPEQFGNIILRANANGATVRLRDVARVEVGGQSYDTSGRLDGKPSSFIGVQLSPTANAL 300 Query: 301 STADAVKKKMAELEPYFPASMKLKTHIAYDTTPFVRVSLEEVVKTLLEAIVLVVLIMYLF 360 TA AV KKM EL YFP +K I YDT+ FV++S+EEVVKTL+EAIVLV L+M+LF Sbjct: 301 GTATAVHKKMEELAKYFPTGVKYT--IPYDTSKFVKISIEEVVKTLIEAIVLVFLVMFLF 358 Query: 361 LQNIRATFIPAITVPVVLLGTFGILAMFGYSINTLTMFGMVLAIGLLVDDAIVVVENVER 420 LQNIR T IP I VPV LLGTF L +FG+SIN LTMFGMVLAIG+LVDDAIVVVENVER Sbjct: 359 LQNIRYTIIPTIVVPVALLGTFATLLLFGFSINVLTMFGMVLAIGILVDDAIVVVENVER 418 Query: 421 LMSEEKLSPKEATRKSMQEITGALVGIAMVLSAVFIPMAFFGGSTGVIYRQFSITIVSAM 480 +MSEE LSP +ATRK+M +I+GAL+GI +VL AVFIPMAFFGG+ G IYRQFS+++V++M Sbjct: 419 IMSEEGLSPADATRKAMGQISGALIGITLVLIAVFIPMAFFGGAVGAIYRQFSLSMVASM 478 Query: 481 ALSVTVALTLTPALCASLLKPHPGGHVPHGK-FFTWFNRSFDRNATRYRGGVGGLLKRGK 539 SV +A TLTPALCA++LKP GH K FF WFNR F+ A+ Y+G +GG+L + Sbjct: 479 VFSVLMAFTLTPALCATILKPVEKGHHHEKKGFFGWFNRKFNSTASGYQGIIGGMLNKAG 538 Query: 540 RGLLMYALIAVAMAVLFMRLPTSFLPEEDQGVLMAQIQLPTGATAEQTATVVKTVQDYFL 599 R +++Y LI + +L++RLP SFLP EDQG ++ +QLP GA+ +T VVK +++Y+L Sbjct: 539 RYMIVYVLIVACVGLLYVRLPASFLPNEDQGYIITNVQLPPGASTSRTTAVVKQIEEYYL 598 Query: 600 NKPESVESVLAIVGSGVGGNSQNSARAFIRLKQWDERTAADQSALALVRRANADLSKIRG 659 P +VE +A++G GN QN+A F LK W +R + QSA A+ +A S+I+ Sbjct: 599 KDP-AVEHAIAVLGYSFSGNGQNAALVFTPLKDWSQRDKS-QSADAIAGKAFGAFSQIKD 656 Query: 660 ARVFLMNPPVVRGLGQSSGFDFELKDVGGVGHDALLKARDQFLRAARSSAVLANVRTTGL 719 A VF +NPP + LG ++GF F L+D G+GH AL++AR+Q L A S VLA VR GL Sbjct: 657 AIVFPLNPPPIPELGNATGFTFRLQDRAGLGHTALVQARNQILGMASQSKVLAGVRPEGL 716 Query: 720 DDTPQLRVAIDDRKADALSVATSDINSSLATVMGGTYVNDFLSNGRVKKVYVQGDAPFRM 779 +D PQL++ ID KA+AL V S INS L+T +G +YVNDF + GR ++V VQ DA R+ Sbjct: 717 EDAPQLQLDIDRDKANALGVPFSTINSVLSTALGSSYVNDFPNLGRQQRVIVQADAKRRL 776 Query: 780 QAEDLNRWYVRNSASQMVPFSAFMTSKWSYGPSLLERYNGVSSFEIVGEPAAGVSSGTAM 839 Q EDL Y RNS+ MVPFSAF+T+KW GP L RYNG + +I G A G S+G AM Sbjct: 777 QPEDLTNLYARNSSGTMVPFSAFVTAKWINGPVQLIRYNGYPAMKIAGGAAPGRSTGEAM 836 Query: 840 AEVEKLAAQLPAGIGFEWTGSSYQERLSGNQAPMLYAISILFVFLCLAALYESWSVPFAV 899 AE+E A+LP G GFEWTG S +E+ SGNQAP LYA+S++ VFL LAALYES S+P AV Sbjct: 837 AEMESFVAKLPPGFGFEWTGQSLEEKTSGNQAPALYALSLIAVFLVLAALYESTSIPLAV 896 Query: 900 ILAVPLGIIGTVLLTGIFGMSNDVYFQVGLLTTVGLSAKNAILIVEFAKQLHESGKSLWD 959 +L VPLGI+G +L + M NDVYF+VG++ VGLSAKNAILI+EFAK L GK L + Sbjct: 897 MLVVPLGILGALLGVTLRAMPNDVYFKVGMIAVVGLSAKNAILIIEFAKDLQAQGKGLIE 956 Query: 960 ATLEAVQLRLRPILMTSLAFVFGVLPLAVATGAGSASRRAIGTGVMGGMLSATMLGIFFV 1019 ATLEAV LR RPI+MTSLAF+ GVLPLA+A+GAGSAS+RAIGTGVMGGM++AT+L +F V Sbjct: 957 ATLEAVHLRFRPIIMTSLAFILGVLPLAIASGAGSASQRAIGTGVMGGMITATVLAVFLV 1016 Query: 1020 PLFYYLIGTWLDRRAANKPRQ-DDDHA 1045 P+F+ ++ + + + R+ D +H+ Sbjct: 1017 PIFFVVVRKIF--KGSERQRKFDAEHS 1041 >gi|300313244|ref|YP_003777336.1| multidrug efflux system transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 1033 Score = 987 bits (2551), Expect = 0.0, Method: Compositional matrix adjust. Identities = 507/1039 (48%), Positives = 707/1039 (68%), Gaps = 6/1039 (0%) Query: 1 MARFFIDRPIFAWVMAIIIMLGGMMSIRSLSLEQYPNIAPPQVNIKATYTGASAKTLEDS 60 M RFFIDRPIFAWV+A+ I+L G++++ L + +YP++APP V+I ATY GA+ +T+ D Sbjct: 1 MPRFFIDRPIFAWVVALFIVLFGVIAMSQLPIARYPSVAPPTVSINATYPGATPQTMNDG 60 Query: 61 VTQIIEQQMKGLDNLQYMSASSSSAGSSTVTLTFTAGTNPDVAQMQVQNKLQQVTARLPQ 120 V +IE+++ G+ NL Y +S+ ++G++ +++TF GT+P++AQ+ VQNKL+ + ARLPQ Sbjct: 61 VISLIERELSGVKNLLYFESSADTSGTAQISVTFKPGTDPELAQVDVQNKLKAIEARLPQ 120 Query: 121 AVQNNGVTVTKASTDILMVLSLSSDDPRITSIDIGDFINSSLTDQISRVPGVGDVTAFGT 180 V+ NGVTV A++ L+++SL+S D R + + D++ ++ +++ R+ GVG V FG Sbjct: 121 TVRQNGVTVESAASSFLLMVSLTSVDGRYDEVRLNDYLARNIVEELRRMEGVGRVQLFGA 180 Query: 181 NYAMRIWLDPAKLQKYALMPSDITSALEAQNTEVSAGEIGALPAQPGQQINATITARSKL 240 AMRIWLDP KL Y L +DI++A+ QN +++ G +G PA GQQI +T + +L Sbjct: 181 EQAMRIWLDPFKLNAYGLTVTDISTAISQQNAQIAPGRLGDAPAVRGQQIAMPLTVQGQL 240 Query: 241 TTAEEFRNIVVKSSSDGSVVKMSDVARVELGGESYQTASRQDGKPSSALAIQLATGANAL 300 + +F IV+K+ +DGS V + DVARVELG +SY A+R++GKP+ A+QL+ GANA+ Sbjct: 241 QSPAQFAAIVLKAKADGSRVLLGDVARVELGAQSYAFANRENGKPAGVAAVQLSPGANAV 300 Query: 301 STADAVKKKMAELEPYFPASMKLKTHIAYDTTPFVRVSLEEVVKTLLEAIVLVVLIMYLF 360 TA A++ +M EL P P M + Y+T PFV++S+++VV+TL+EA+VLV L+MYLF Sbjct: 301 RTAAAIQARMEELRPSLPQGMAFS--LPYNTAPFVKISIQKVVQTLIEAMVLVFLVMYLF 358 Query: 361 LQNIRATFIPAITVPVVLLGTFGILAMFGYSINTLTMFGMVLAIGLLVDDAIVVVENVER 420 LQN+R T IPAI P+ LLGT ++ + GYS+N LTMFGMVLAIG++VDDAIVVVENVER Sbjct: 359 LQNVRYTVIPAIVAPIALLGTLAVMQLAGYSVNVLTMFGMVLAIGIIVDDAIVVVENVER 418 Query: 421 LMSEEKLSPKEATRKSMQEITGALVGIAMVLSAVFIPMAFFGGSTGVIYRQFSITIVSAM 480 +M+ E L P+EAT K+M EITGA++GI +VL+AVFIPMA GGS GVIYRQFS+ + ++ Sbjct: 419 IMAHEGLGPREATIKAMGEITGAIIGITLVLTAVFIPMALAGGSVGVIYRQFSVAMAVSI 478 Query: 481 ALSVTVALTLTPALCASLLKPHPGGHVPHGKFFTWFNRSFDRNATRYRGGVGGLLKRGKR 540 S +AL+LTPALCA+LL+P P GH FF FNR+F+R RY +G L+ RG R Sbjct: 479 LFSAFLALSLTPALCATLLRPVPAGHHDKRGFFGAFNRAFNRLTARYESALGRLIARGLR 538 Query: 541 GLLMYALIAVAMAVLFMRLPTSFLPEEDQGVLMAQIQLPTGATAEQTATVVKTVQDYFLN 600 +L+YA ++ + V LP++FLPEEDQG M QLP AT E+TA V + Y Sbjct: 539 MMLVYAALSGLLVVGMQALPSAFLPEEDQGYFMTSFQLPADATTERTARAVDQFERYLKG 598 Query: 601 KPESVESVLAIVGSGVGGNSQNSARAFIRLKQWDERTAADQSALALVRRANADLSKIRGA 660 + E + + L+++G G G+ N+A AF LK W ER + SA + A S + G Sbjct: 599 R-EDIGANLSVLGFGFSGSGPNAAMAFTELKDWKERKGST-SAAEAMAAQAAMESGVDGM 656 Query: 661 RVFLMNPPVVRGLGQSSGFDFELKDVGGVGHDALLKARDQFLRAARSSAVLANVRTTGLD 720 + L+ PP + LG SSGF L+D G+ AL A Q L A S L+ V + GL Sbjct: 657 VMSLL-PPAIEELGNSSGFAMRLQDRANQGYAALKAAEAQLLALAAKSRKLSGVYSDGLP 715 Query: 721 DTPQLRVAIDDRKADALSVATSDINSSLATVMGGTYVNDFLSNGRVKKVYVQGDAPFRMQ 780 +++ ID KA AL V+ S I+ +L+ MG YVNDF + GR+++V +Q A RMQ Sbjct: 716 AGASVQLEIDRHKAAALGVSFSSISDTLSAAMGSFYVNDFPNAGRMQQVILQAQASARMQ 775 Query: 781 AEDLNRWYVRNSASQMVPFSAFMTSKWSYGPSLLERYNGVSSFEIVGEPAAGVSSGTAMA 840 ED+ + YVRN + MVP + + + W P+ L+RY G + I G A GV+SG AMA Sbjct: 776 LEDVMKLYVRNQSGGMVPLAELVKASWREAPTQLQRYQGFPAVRISGSAAPGVASGEAMA 835 Query: 841 EVEKLAAQLPAGIGFEWTGSSYQERLSGNQAPMLYAISILFVFLCLAALYESWSVPFAVI 900 E+E+LA QLP G WTG S QERLS QAPML A+S+L VFL LAALYESWS+P +V+ Sbjct: 836 EMERLAQQLPPGFAVAWTGQSLQERLSAAQAPMLMALSMLVVFLVLAALYESWSIPLSVM 895 Query: 901 LAVPLGIIGTVLLTGIFGMSNDVYFQVGLLTTVGLSAKNAILIVEFAKQLHESGKSLWDA 960 L VPLG++G V + M NDV+F+VG++T +GLSAKNAILIVEFA+QL G L +A Sbjct: 896 LVVPLGLVGAVAAVILRDMPNDVFFKVGMITVIGLSAKNAILIVEFARQLRSEGMGLVEA 955 Query: 961 TLEAVQLRLRPILMTSLAFVFGVLPLAVATGAGSASRRAIGTGVMGGMLSATMLGIFFVP 1020 ++A LRLRPILMTSLAF GV+PL +A+GA + ++RAIGTGV GGM+SAT+L + FVP Sbjct: 956 AIKASVLRLRPILMTSLAFALGVVPLMLASGASAETQRAIGTGVFGGMVSATVLAVLFVP 1015 Query: 1021 LFYYLIGTWLDRRAANKPR 1039 +F+ L+ +R A K R Sbjct: 1016 VFFVLV-LGCAQRLARKGR 1033 >gi|300309657|ref|YP_003773749.1| cation/multidrug efflux pump protein [Herbaspirillum seropedicae SmR1] Length = 1071 Score = 691 bits (1783), Expect = 0.0, Method: Compositional matrix adjust. Identities = 445/1055 (42%), Positives = 659/1055 (62%), Gaps = 35/1055 (3%) Query: 1 MARFFIDRPIFAWVMAIIIMLGGMMSIRSLSLEQYPNIAPPQVNIKATYTGASAKTLEDS 60 +++FFIDRPIFA V++++++LGG++++ L + +YP + PP V ++A Y GA+ K + ++ Sbjct: 3 ISKFFIDRPIFAGVLSVLLLLGGVLAMLQLPISEYPEVVPPSVVVRAQYPGANPKVIAET 62 Query: 61 VTQIIEQQMKGLDNLQYMSASSSSAGSSTVTLTFTAGTNPDVAQMQVQNKLQQVTARLPQ 120 V +E+Q+ G++N+ YM + ++S G+ T+T+ F G +PD AQ VQN++ Q RLP+ Sbjct: 63 VASPLEEQINGVENMLYMQSQANSDGNLTITVNFRLGVDPDKAQQLVQNRVSQALPRLPE 122 Query: 121 AVQNNGVTVTKASTDILMVLSLSSDDPRITSIDIGDFINSSLTDQISRVPGVGDVTAFGT 180 VQ GVT K+S + MV+ L+S D R + + ++ ++ D+++R+ GVG+V FG+ Sbjct: 123 DVQRLGVTTLKSSPTLTMVVHLTSPDNRYDTTYLRNYAVLNVKDRLARIQGVGEVGLFGS 182 Query: 181 -NYAMRIWLDPAKLQKYALMPSDITSALEAQNTEVSAGEIGALPAQPGQQINATITARSK 239 NYAMR+WLDP K+ + L +D+ A+ QN +V+AG IGA P+ P + ++ A+ + Sbjct: 183 GNYAMRVWLDPNKVAQRGLTATDVVRAIREQNVQVAAGVIGASPSSPETPLQLSVNAQGR 242 Query: 240 LTTAEEFRNIVVKSSSDGSVVKMSDVARVELGGESYQTASRQDGKPSSALAIQLATGANA 299 L T EFR+I++K+S DG+ ++ DVARVEL Y S D KP+ A+ I A GANA Sbjct: 243 LKTEGEFRDIILKASPDGATTRLGDVARVELAASEYGLRSLLDNKPAVAIPIFQAPGANA 302 Query: 300 LSTADAVKKKMAELEPYFPASMKLKTHIAYDTTPFVRVSLEEVVKTLLEAIVLVVLIMYL 359 L + V+ M EL FP+S+ I YD T FVR S+E VV TLLEAI LVV+++ + Sbjct: 303 LDVSTQVRAAMKELSADFPSSVSYS--IVYDPTQFVRASIEAVVHTLLEAIALVVIVVII 360 Query: 360 FLQNIRATFIPAITVPVVLLGTFGILAMFGYSINTLTMFGMVLAIGLLVDDAIVVVENVE 419 FLQ RA+ IP + VPV ++GTF ++ FGY+IN L++FGMVLAIG++VDDAIVVVENVE Sbjct: 361 FLQTWRASIIPLLAVPVSIIGTFSLMLGFGYTINALSLFGMVLAIGIVVDDAIVVVENVE 420 Query: 420 RLMSEEKLSPKEATRKSMQEITGALVGIAMVLSAVFIPMAFFGGSTGVIYRQFSITIVSA 479 R + LSP++AT ++MQE++G ++ IA+ L AVF+P+AF G TG Y+QF++TI + Sbjct: 421 RNIGA-GLSPRDATYRAMQEVSGPIIAIALTLVAVFVPLAFMTGLTGQFYKQFAMTIAIS 479 Query: 480 MALSVTVALTLTPALCASLLKPHPGGHVPHGKFFTWFNRSFDR---------------NA 524 +S +LTL+PAL A LLK H G P W R DR + Sbjct: 480 TVISAFNSLTLSPALAALLLKGH--GDKPD-----WLTRQMDRFLGGFFIRFNRFFNRAS 532 Query: 525 TRYRGGVGGLLKRGKRGLLMYALIAVAMAVLFMRLPTSFLPEEDQGVLMAQIQLPTGATA 584 Y GV G++KR + +Y L+ A + +P F+P +D+ L+A QLP GA+ Sbjct: 533 DNYGHGVTGVIKRKGATMGVYVLLLAATLGISYIVPGGFVPGQDKQYLVAFAQLPNGASI 592 Query: 585 EQTATVVKTVQDYFLNKPESVESVLAIVGSGVGG--NSQNSARAFIRLKQWDERTAADQS 642 +++ V++ + D L +P V S +A G + G NS ++ F+ LK ++ER + D S Sbjct: 593 DRSEEVMRKMSDIMLKEP-GVASAIAFPGLSINGFTNSSSAGIVFVGLKPFEERKSKDLS 651 Query: 643 ALALVRRANADLSKIRGARVFLMNPPVVRGLGQSSGFDFELKDVGGVGHDALLKARDQFL 702 A+ N I+ A + PP V GLG GF +++D +G+ L KA F+ Sbjct: 652 GNAIAASLNKKFGSIKEAFTAVFPPPPVMGLGTLGGFKMQIEDRDALGYAELDKAAQAFM 711 Query: 703 RAARSSAVLANVRTTGLDDTPQLRVAIDDRKADALSVATSDINSSLATVMGGTYVNDFLS 762 +AA L + ++ + PQL V +D KA L + +D+ +++ +G YVNDF Sbjct: 712 KAAAKEPALGPMFSSYQINVPQLDVELDRVKAKQLGIPVTDVFNTMQIYLGSLYVNDFNR 771 Query: 763 NGRVKKVYVQGDAPFRMQAEDLNRWYVRNSASQMVPFSAFMTSKWSYGPSLLERYNGVSS 822 GRV +V Q DAPFR +AED+ + RN A +MVP S+ + K ++GP ++ RYNG ++ Sbjct: 772 FGRVYQVRAQADAPFRAKAEDIAQLKTRNDAGEMVPLSSVVKVKQTFGPEMVVRYNGYTA 831 Query: 823 FEIVGEPAAGVSSG-TAMAEVEKLAAQLPAGIGFEWTGSSYQERLSGNQAPMLYAISILF 881 +I G PA G SS A AA LP GI FEWT +YQ+ L+GN ++ IS+L Sbjct: 832 ADINGGPAPGYSSDQAQAAAERVAAATLPRGIKFEWTDLTYQKILAGNAGVWVFPISVLL 891 Query: 882 VFLCLAALYESWSVPFAVILAVPLGIIGTVLLTGIFGM--SNDVYFQVGLLTTVGLSAKN 939 VFL LAALYES ++P AVIL VP+ I+ LTG++ N+++ Q+GL+ VGLSAKN Sbjct: 892 VFLVLAALYESLTLPLAVILIVPMSILAA--LTGVWLTRGDNNIFTQIGLMVLVGLSAKN 949 Query: 940 AILIVEFAKQLHESGKSLWDATLEAVQLRLRPILMTSLAFVFGVLPLAVATGAGSASRRA 999 AILIVEFA++L G++ A +EA +LRLRPILMTS+AF+ GV+PL ++GAGS R A Sbjct: 950 AILIVEFARELEMQGRTAVQAAIEASRLRLRPILMTSIAFIMGVVPLVTSSGAGSEMRHA 1009 Query: 1000 IGTGVMGGMLSATMLGIFFVPLFYYLIGTWLDRRA 1034 +G V GML T+ G+F P+FY L+ T +DRRA Sbjct: 1010 MGIAVFFGMLGVTLFGLFLTPVFYVLLRT-IDRRA 1043 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.133 0.375 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 2,875,920 Number of extensions: 112244 Number of successful extensions: 591 Number of sequences better than 1.0e-08: 11 Number of HSP's gapped: 502 Number of HSP's successfully gapped: 14 Length of query: 1051 Length of database: 1,619,870 Length adjustment: 95 Effective length of query: 956 Effective length of database: 1,170,045 Effective search space: 1118563020 Effective search space used: 1118563020 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 136 (57.0 bits)