BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4468.p
         (272 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313878|ref|YP_003777970.1| metal-dependent transmembrane h...   419   e-118
gi|300313733|ref|YP_003777825.1| metal-dependent hydrolase [Herb...   102   4e-23
gi|300313739|ref|YP_003777831.1| amidohydrolase 2 [Herbaspirillu...    98   6e-22

>gi|300313878|ref|YP_003777970.1| metal-dependent transmembrane
           hydrolase [Herbaspirillum seropedicae SmR1]
          Length = 278

 Score =  419 bits (1076), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 207/268 (77%), Positives = 222/268 (82%)

Query: 4   TPLRIDTHAHVFARGLPMADGRRYTPAYDVTVEQYLARLDAHGMSHGVLVQPSFLGSDNS 63
           T LRIDTHAHVF R LP+AD RRY P YDVTVEQY+ARLD HGMSHGVLVQPSFLGSDN 
Sbjct: 10  TVLRIDTHAHVFTRDLPLADVRRYAPTYDVTVEQYIARLDTHGMSHGVLVQPSFLGSDNR 69

Query: 64  YLLQAIARAPQRLRGIAMVDADISDTELQALQQGGVVGVRFNLVGGAALPDFKGAWRDTL 123
           YLL A+AR PQRLRGIAMVDAD+S+ +L ALQ GGVVG+RFNLVGGA +PDF G WR TL
Sbjct: 70  YLLAALARYPQRLRGIAMVDADVSEQQLLALQAGGVVGIRFNLVGGAPVPDFTGVWRSTL 129

Query: 124 TRIAALDWQVEIHREAIDLPLVLDPLLERGMKVVVDHFGRVDAGLGVADPGFRYLLSTGA 183
            RIA L WQVEIHREA+DLP VL PLL  G+KVVVDHFGRVDA LGV DPGFRYLLS+ A
Sbjct: 130 ARIAQLGWQVEIHREAVDLPRVLPPLLAMGLKVVVDHFGRVDAALGVDDPGFRYLLSSAA 189

Query: 184 SRHVWVKLSAQYRNGGAQGGAGFARQAWPLLREHLGTDRLLWGSDWPHTQHESVTDYADS 243
              VWVKLSA YRNGGA+ G  FARQAWPLLREH G  RLLWGSDWPHTQHES+TDY  S
Sbjct: 190 GGQVWVKLSASYRNGGAEQGQRFARQAWPLLREHFGAQRLLWGSDWPHTQHESLTDYGHS 249

Query: 244 WLRFEQLVSDEQDRHRIIGQTAAQLFHI 271
           W +F QLVSDE+ R  I GQTAAQLF I
Sbjct: 250 WQQFTQLVSDEEQRRIITGQTAAQLFGI 277


>gi|300313733|ref|YP_003777825.1| metal-dependent hydrolase
           [Herbaspirillum seropedicae SmR1]
          Length = 309

 Score =  102 bits (253), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 82/277 (29%), Positives = 123/277 (44%), Gaps = 19/277 (6%)

Query: 6   LRIDTHAHVFARGLPMADGRRYTPAYDVTVEQYLARLDAHGMSHGVLVQPSFLGSDNSYL 65
           L  D+H H++    P++   R       TV  Y   +   G++  V+VQPS  GSDN  L
Sbjct: 42  LACDSHHHIYDARFPVSPHWRGGRPDGATVADYRLLMAKLGIARHVVVQPSTYGSDNRCL 101

Query: 66  LQAIARAPQRLRGIAMVDADISDTELQALQQGGVVGVRFNLVGGAALPDFKGAW------ 119
           L A+ +   + RGI ++D D+   +L+ + + GV GVR N +          +W      
Sbjct: 102 LDALTQFGAQARGIVVIDDDVDLPQLKEMDRLGVRGVRVNFLSAQ-------SWGVTTVE 154

Query: 120 --RDTLTRIAALDWQVEIHREAIDLPLVLDPLLERGMKVVVDHFGRVDAGLGVADPGFRY 177
             R T  RIA L W V++      +      L     +VV+DH GR+    G+  PG + 
Sbjct: 155 RLRRTAERIAPLGWHVQVLMSGAQIAQHEAVLAALPTQVVIDHLGRIPQPDGLDHPGAQA 214

Query: 178 LLSTGASRHVWVKLSAQYRNGGAQGGAGFARQAWPLLREHL--GTDRLLWGSDWPHTQHE 235
           +L   A  + W+KLS  Y +   QG   +   +  L + +L     R LWGSDWPH   +
Sbjct: 215 VLRLLAKGNTWIKLSEPYAD-TLQGPPDYPDTSL-LAKAYLQAAPQRTLWGSDWPHPTEK 272

Query: 236 SVTDYADSWLRFEQLVSDEQDRHRIIGQTAAQLFHIA 272
              D A  +        D   R +I+    A LF  A
Sbjct: 273 IKPDDAVLFDLLAAWAPDPALRQQILVSNPAALFGFA 309


>gi|300313739|ref|YP_003777831.1| amidohydrolase 2 [Herbaspirillum
           seropedicae SmR1]
          Length = 315

 Score = 98.2 bits (243), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 83/255 (32%), Positives = 118/255 (46%), Gaps = 19/255 (7%)

Query: 8   IDTHAHVFARGLPMADGRR--YTPAYDVTVEQYLARLDAHGMSHGVLVQPSFLGSDNSYL 65
            D H H++      A G +  + PA      Q   RL   G +  V+V PS  G DNS  
Sbjct: 55  CDCHMHIYDPRFAWAPGAKLVHAPATVAMYRQLQQRL---GTTRNVVVTPSAYGVDNSCT 111

Query: 66  LQAIARAPQRLRGIAMVDADISDTELQALQQGGVVGVRFNLVGGAALPDFKGAWRDTLTR 125
           L A+A+  +  RG+A+V+  +SD ELQ L Q GV G+RFNL  G+              R
Sbjct: 112 LDALAQLGRSARGVAVVNDQVSDAELQRLHQAGVRGLRFNLAVGSV--TTVEMMEPLARR 169

Query: 126 IAALDWQVEIHREAIDLPLVLDPLLER-GMKVVVDHFGRVDAGLGVADPGFRYLLSTGAS 184
           +A L W ++ +    ++ L    +L R  + +V DHF R+        P F ++      
Sbjct: 170 MAPLGWHLQANMPN-EVLLAHRAMLARLPVPLVFDHFARIPLQADATHPVFDFVTGLMRE 228

Query: 185 RHVWVKLSAQYRNGGAQGGAGFARQAWPLLRE--HLGTDRLLWGSDWPHT--QHES---- 236
           R   VKLS  Y    ++ GA       PL R    L   +L+WGSDWPH   QH+     
Sbjct: 229 RRASVKLSGAYLY--SKRGAPDYDDVAPLARALVQLAPTQLVWGSDWPHPTEQHKPDDAR 286

Query: 237 VTDYADSWLRFEQLV 251
           + D   SWL  E++V
Sbjct: 287 LLDVMISWLGSEEMV 301


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.138    0.431 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 918,494
Number of extensions: 39338
Number of successful extensions: 138
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 133
Number of HSP's successfully gapped: 3
Length of query: 272
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 188
Effective length of database: 1,222,130
Effective search space: 229760440
Effective search space used: 229760440
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)