BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4467.p (512 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313877|ref|YP_003777969.1| methyl-accepting chemotaxis sen... 837 0.0 gi|300312038|ref|YP_003776130.1| methyl-accepting chemotaxis tra... 465 e-132 gi|300310474|ref|YP_003774566.1| methyl-accepting chemotaxis tra... 434 e-123 gi|300313897|ref|YP_003777989.1| methyl-accepting chemotaxis pro... 433 e-122 gi|300309735|ref|YP_003773827.1| methyl-accepting chemotaxis sen... 425 e-120 >gi|300313877|ref|YP_003777969.1| methyl-accepting chemotaxis sensory transducer protein [Herbaspirillum seropedicae SmR1] Length = 539 Score = 837 bits (2163), Expect = 0.0, Method: Compositional matrix adjust. Identities = 445/512 (86%), Positives = 484/512 (94%) Query: 1 MDRKIATKLLLSFITVLGLMSALGLFSLYQMDKVNDAATEIAHKWEPSIRISLMLERTLV 60 MDRKIATKLLLSF+ VL LMS LG+FS+YQMDKVNDAATEIAHKWEPS+RISL LE+ L Sbjct: 24 MDRKIATKLLLSFVAVLMLMSCLGVFSVYQMDKVNDAATEIAHKWEPSVRISLTLEKVLA 83 Query: 61 RVRSTEFQHILGNEQTMATLEKALAERYAEFTTLQQDYRKLDLTKEESAAFDQLSNTLAA 120 RVRSTEFQHILGN+++MATLEKAL ERYAEFT LQQDYRKL LT EE+A+FDQ+S TLAA Sbjct: 84 RVRSTEFQHILGNQESMATLEKALTERYAEFTQLQQDYRKLPLTPEETASFDQVSKTLAA 143 Query: 121 YLVEHRKIIALSHENHKDEALALTKGDSLKAYRAIEKQFSALRQANIDHKEEANTAADRV 180 YLVEHRKIIALSH+N KDEALALTKGDSLKAYRAI+KQF+ LRQ++IDHKEEANT AD++ Sbjct: 144 YLVEHRKIIALSHDNRKDEALALTKGDSLKAYRAIDKQFATLRQSSIDHKEEANTLADQI 203 Query: 181 FDHSQHWIMGLLVAGILLGLALAIAIARVVSRPLAEALQLARRVADNDLSGQVNVHSRDE 240 +D SQHWI+GLL+AGI LGLALAIAIAR+VS+PLA+ALQLAR+VADNDL+GQV VHS DE Sbjct: 204 YDSSQHWIIGLLLAGIALGLALAIAIARIVSQPLAQALQLARQVADNDLTGQVRVHSADE 263 Query: 241 TGQLMLALNHMTYSLGEMVGEVHRSIAIINTASGEIAHGNADLSARTESQASSLEETASA 300 TGQLM ALNHMT SLG MV EVHRSI++I+TASGEIA GNADLSARTESQASSLEETASA Sbjct: 264 TGQLMQALNHMTQSLGNMVAEVHRSISVIDTASGEIASGNADLSARTESQASSLEETASA 323 Query: 301 MEELTSTVRQNAEHAHQANELVSTSTRLAQQGGAVVDRVVQTMGEIRSGSARIADIIGVI 360 MEELTSTVRQNA+HAHQANELV+TS+RLA QGGAVVD+VVQTMGEIR+GSARIADI GVI Sbjct: 324 MEELTSTVRQNADHAHQANELVATSSRLAVQGGAVVDQVVQTMGEIRTGSARIADITGVI 383 Query: 361 DGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSAAAAREIKELIEGSVQQV 420 DGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSAAAAREIK LIEGSVQQV Sbjct: 384 DGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSAAAAREIKALIEGSVQQV 443 Query: 421 ASGADLVDQAGKTMHEIVDSVARVATLMSEIAVASREQSRGIDEINHAVTQMDEGTQQNA 480 A+GA+LVDQAG+TMHEIVDSVARVATLMSEIAVASREQSRGIDEINHAVTQMDEGTQQNA Sbjct: 444 ATGAELVDQAGQTMHEIVDSVARVATLMSEIAVASREQSRGIDEINHAVTQMDEGTQQNA 503 Query: 481 ALVEQAAAAAHSLRDQTDQLASLVARFRLRSV 512 ALVEQAAAAAHSLRDQT QLA+LVARFRLR + Sbjct: 504 ALVEQAAAAAHSLRDQTRQLAALVARFRLRGM 535 >gi|300312038|ref|YP_003776130.1| methyl-accepting chemotaxis transmembrane I protein [Herbaspirillum seropedicae SmR1] Length = 579 Score = 465 bits (1197), Expect = e-132, Method: Compositional matrix adjust. Identities = 266/509 (52%), Positives = 360/509 (70%), Gaps = 1/509 (0%) Query: 2 DRKIATKLLLSFITVLGLMSALGLFSLYQMDKVNDAATEIAHKWEPSIRISLMLERTLVR 61 D +I+ KL+ +F+ V+ +++ALG+FS+ Q+D+VN A+TEI+ W PSIR L+ + R Sbjct: 6 DLRISRKLITTFLVVVAMVAALGVFSIRQLDQVNSASTEISTNWLPSIRTLARLQLAMSR 65 Query: 62 VRSTEFQHILGNE-QTMATLEKALAERYAEFTTLQQDYRKLDLTKEESAAFDQLSNTLAA 120 +RS E QHIL + + +E+ + + T Q +Y EE A + ++ +A Sbjct: 66 LRSFELQHILAKDAKEYEEVERGMQVQMNNLKTAQAEYVTQISEPEEKAIYPEVEKLIAT 125 Query: 121 YLVEHRKIIALSHENHKDEALALTKGDSLKAYRAIEKQFSALRQANIDHKEEANTAADRV 180 ++ EH KIIALS + +EA L +G+S KAYR +Q L N + +N AD + Sbjct: 126 FVSEHDKIIALSRQGKDEEARNLQRGESTKAYRTSLQQIDKLAAVNDKGADISNKQADAI 185 Query: 181 FDHSQHWIMGLLVAGILLGLALAIAIARVVSRPLAEALQLARRVADNDLSGQVNVHSRDE 240 + ++ WI+ + A I L + LA+ ++R+++RPL EA+ +A+RVA DL+ ++ +DE Sbjct: 186 YAQARLWIIVTVAACIGLAMLLAVWVSRLIARPLEEAVSVAQRVAGGDLTTRIEPAGKDE 245 Query: 241 TGQLMLALNHMTYSLGEMVGEVHRSIAIINTASGEIAHGNADLSARTESQASSLEETASA 300 TGQL++AL M SL +VG+V I TAS EIA GN DLS+RTE QASSLEETASA Sbjct: 246 TGQLLVALKSMNDSLVGIVGQVRMGTQTITTASTEIASGNLDLSSRTEEQASSLEETASA 305 Query: 301 MEELTSTVRQNAEHAHQANELVSTSTRLAQQGGAVVDRVVQTMGEIRSGSARIADIIGVI 360 MEELTSTV+QNA++A QAN+L +++ +A QGGAVV++VV TMG I + S +IADIIGVI Sbjct: 306 MEELTSTVKQNADNARQANQLAVSASEVASQGGAVVNQVVDTMGSINASSRKIADIIGVI 365 Query: 361 DGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSAAAAREIKELIEGSVQQV 420 DGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVRSLAQRSA AA+EIKELIEGSV QV Sbjct: 366 DGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAGAAKEIKELIEGSVAQV 425 Query: 421 ASGADLVDQAGKTMHEIVDSVARVATLMSEIAVASREQSRGIDEINHAVTQMDEGTQQNA 480 G+ LV++AG TM E+V SV RV ++ EI+ AS+EQS GI+++N A+ QMDE TQQNA Sbjct: 426 DMGSKLVERAGITMSEVVQSVRRVTDIVGEISSASQEQSEGIEQVNLAIAQMDEVTQQNA 485 Query: 481 ALVEQAAAAAHSLRDQTDQLASLVARFRL 509 ALVE+AAAAA SL++Q + L V F+L Sbjct: 486 ALVEEAAAAAQSLQEQAETLTQTVGFFKL 514 >gi|300310474|ref|YP_003774566.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 515 Score = 434 bits (1116), Expect = e-123, Method: Compositional matrix adjust. Identities = 260/506 (51%), Positives = 339/506 (66%), Gaps = 1/506 (0%) Query: 5 IATKLLLSFITVLGLMSALGLFSLYQMDKVNDAATEIAHKWEPSIRISLMLERTLVRVRS 64 IA KL LSF V+ L GLF++ ++ +VN A+ EI KW P++ + L+ +L +R Sbjct: 9 IAKKLALSFAVVIALTLLQGLFAIKELKQVNKASGEIVSKWMPTMDAARELQGSLPPLRL 68 Query: 65 TEFQHILG-NEQTMATLEKALAERYAEFTTLQQDYRKLDLTKEESAAFDQLSNTLAAYLV 123 E + + Q A KA+ +R T + + + +E + Q L AY+ Sbjct: 69 NELELVTAVTPQERAAANKAIKDRLDALTRQRAIFEQRMSEPQEKEQYAQFLKNLTAYVK 128 Query: 124 EHRKIIALSHENHKDEALALTKGDSLKAYRAIEKQFSALRQANIDHKEEANTAADRVFDH 183 ++ ++ DE AL GDS K YR++ A+ + N +A+ A VF Sbjct: 129 VDEQLAEMAANQQYDETRALFNGDSAKLYRSMVGNLDAIVKINTSGSAQADEEASTVFRG 188 Query: 184 SQHWIMGLLVAGILLGLALAIAIARVVSRPLAEALQLARRVADNDLSGQVNVHSRDETGQ 243 +Q WI+GLL A +L+ LA +A VSRPL EA+Q+A+RVA DL+ ++ RDETG Sbjct: 189 AQRWIVGLLAATVLIASLLAFLVATNVSRPLKEAVQIAQRVARGDLTLRIRPAGRDETGA 248 Query: 244 LMLALNHMTYSLGEMVGEVHRSIAIINTASGEIAHGNADLSARTESQASSLEETASAMEE 303 LM AL M SL ++V EV + I TAS EIA GN DLS RTE QA SLEETASAMEE Sbjct: 249 LMEALRAMNESLRDIVSEVRQGTDTITTASHEIARGNLDLSNRTEQQAGSLEETASAMEE 308 Query: 304 LTSTVRQNAEHAHQANELVSTSTRLAQQGGAVVDRVVQTMGEIRSGSARIADIIGVIDGI 363 LTSTV QNA++A QAN+L +T++ +A QGG VV +VVQTM I S RIADII VIDGI Sbjct: 309 LTSTVTQNADNARQANQLAATASDIASQGGEVVGQVVQTMEGITESSRRIADIISVIDGI 368 Query: 364 AFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSAAAAREIKELIEGSVQQVASG 423 AFQTNILALNAAVEAARAGEQGRGFAVVA+EVRSLAQRSA AA+EIKELI+ SVQ+V++G Sbjct: 369 AFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAGAAKEIKELIDDSVQKVSAG 428 Query: 424 ADLVDQAGKTMHEIVDSVARVATLMSEIAVASREQSRGIDEINHAVTQMDEGTQQNAALV 483 + LV++AG TM E+V SV RV +++EI+ A++EQS GI+E+N A+TQMDE TQQNAALV Sbjct: 429 SALVERAGSTMTEVVASVRRVTDVVAEISAATQEQSGGINEVNLAITQMDETTQQNAALV 488 Query: 484 EQAAAAAHSLRDQTDQLASLVARFRL 509 EQAAAAA SL+ Q LA++V +F+L Sbjct: 489 EQAAAAADSLKGQASNLAAVVGKFKL 514 >gi|300313897|ref|YP_003777989.1| methyl-accepting chemotaxis protein I [Herbaspirillum seropedicae SmR1] Length = 516 Score = 433 bits (1114), Expect = e-122, Method: Compositional matrix adjust. Identities = 260/510 (50%), Positives = 355/510 (69%), Gaps = 5/510 (0%) Query: 4 KIATKLLLSFITVLGLMSALGLFSLYQMDKVNDAATEIAHKWEPSIRISLMLERTLVRVR 63 KIA KL++SF V+ L LGLF++ ++ VN A+T++A W P+I+ + ++ +L R+R Sbjct: 8 KIAKKLIVSFAAVIVLTVILGLFAIRELKAVNQASTDMATNWLPTIKAAQSIQASLPRMR 67 Query: 64 STEFQHILGNEQTMATLEKALAERYAEFTTLQQD---YRKLDLTKEESAAFDQLSNTLAA 120 +E Q + T A E AL + L + Y EE +++ S + A Sbjct: 68 ISELQMVTA--ATPAEREDALKAIKSRLDILAKQRAAYEAQISEAEEKVLYEKFSKSFAT 125 Query: 121 YLVEHRKIIALSHENHKDEALALTKGDSLKAYRAIEKQFSALRQANIDHKEEANTAADRV 180 YL +++ +S E ++EA AL KGDS K +R++ + + + N + ++ A++V Sbjct: 126 YLEIDKELARISAEGKEEEARALFKGDSNKTFRSMIENMDEIIKVNDAGSKRSDDMAEQV 185 Query: 181 FDHSQHWIMGLLVAGILLGLALAIAIARVVSRPLAEALQLARRVADNDLSGQVNVHSRDE 240 + + WI+GLL A +++ L LA+ +AR VSRPL EA+ +A RVA DL+ + S DE Sbjct: 186 YRSATLWIIGLLAAIVVIALGLAVMVARAVSRPLNEAVAVAERVAQGDLTMDIRATSTDE 245 Query: 241 TGQLMLALNHMTYSLGEMVGEVHRSIAIINTASGEIAHGNADLSARTESQASSLEETASA 300 TG LM +L M SL ++VGEV I TAS EIA GN DLS+RTE QA SLEETASA Sbjct: 246 TGMLMHSLRAMNDSLQQIVGEVRTGTDTITTASQEIATGNLDLSSRTEEQAGSLEETASA 305 Query: 301 MEELTSTVRQNAEHAHQANELVSTSTRLAQQGGAVVDRVVQTMGEIRSGSARIADIIGVI 360 MEELT+TV+QNA++A QAN+L ++++ +A QGGAVV +VVQTM I S RIADII VI Sbjct: 306 MEELTATVKQNADNARQANQLAASASDIATQGGAVVGQVVQTMEGITESSNRIADIISVI 365 Query: 361 DGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSAAAAREIKELIEGSVQQV 420 DGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVRSLAQRSA+AA+EIK+LI+ SV++V Sbjct: 366 DGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKQLIDDSVEKV 425 Query: 421 ASGADLVDQAGKTMHEIVDSVARVATLMSEIAVASREQSRGIDEINHAVTQMDEGTQQNA 480 +G+ LV++AG TM E+V SV RV +++EI+ AS EQS GI+EIN A+TQMDE TQQNA Sbjct: 426 GAGSQLVERAGATMSEVVASVRRVTDVVAEISAASNEQSTGIEEINRAITQMDEVTQQNA 485 Query: 481 ALVEQAAAAAHSLRDQTDQLASLVARFRLR 510 ALVE+AAAAA SL+DQ +L+ +V+ F+L+ Sbjct: 486 ALVEEAAAAAQSLQDQAARLSQVVSVFKLQ 515 >gi|300309735|ref|YP_003773827.1| methyl-accepting chemotaxis sensory transducer protein [Herbaspirillum seropedicae SmR1] Length = 567 Score = 425 bits (1093), Expect = e-120, Method: Compositional matrix adjust. Identities = 254/510 (49%), Positives = 339/510 (66%), Gaps = 2/510 (0%) Query: 2 DRKIATKLLLSFITVLGLMSALGLFSLYQMDKVNDAATEIAHKWEPSIRISLMLERTLVR 61 +R+IATKLLL+F VL L LG+FS+ Q+ KVN AATE+A W PSIR ++ L R Sbjct: 6 NRRIATKLLLAFACVLLLTGGLGIFSIVQLHKVNQAATELATNWLPSIRSLNDMKVALSR 65 Query: 62 VRSTEFQHIL--GNEQTMATLEKALAERYAEFTTLQQDYRKLDLTKEESAAFDQLSNTLA 119 VR+ + Q L G+E+ + + + + ++ Y E A F ++ + Sbjct: 66 VRANQAQLALYDGDEKQSSAVIGLMNKNLEALAEARKQYTGQISEPGEKALFPGVNARID 125 Query: 120 AYLVEHRKIIALSHENHKDEALALTKGDSLKAYRAIEKQFSALRQANIDHKEEANTAADR 179 ++ H +A DEA L G + + Y ++ L Q N+D ++ +A+ Sbjct: 126 KFIALHGDTLAAVRAGKLDEAKRLLLGPAFENYLSLLNDLDKLAQVNLDGSVQSTRSAET 185 Query: 180 VFDHSQHWIMGLLVAGILLGLALAIAIARVVSRPLAEALQLARRVADNDLSGQVNVHSRD 239 +D +Q W++ +L+ +L GLALA+ IARV++ PL A + A +A DL+ + S D Sbjct: 186 TYDQAQVWVVAILIGALLAGLALALFIARVIATPLRSAGEFAHLIAAGDLTADITARSDD 245 Query: 240 ETGQLMLALNHMTYSLGEMVGEVHRSIAIINTASGEIAHGNADLSARTESQASSLEETAS 299 ETGQL AL M SL +V +V I TASG+I+ GN DLS+RTE QASSLEETAS Sbjct: 246 ETGQLTAALAAMNTSLRRIVSQVRSGTDAIATASGQISSGNLDLSSRTEEQASSLEETAS 305 Query: 300 AMEELTSTVRQNAEHAHQANELVSTSTRLAQQGGAVVDRVVQTMGEIRSGSARIADIIGV 359 AMEELTSTVRQNAE+A QAN+L +++ +A++GG VV +V++TMG I + S +I DII V Sbjct: 306 AMEELTSTVRQNAENARQANQLALSASTIAEEGGKVVSQVIETMGSIDASSKKIVDIISV 365 Query: 360 IDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSAAAAREIKELIEGSVQQ 419 ID IAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSA AA+EIK LI+ SVQQ Sbjct: 366 IDSIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSATAAKEIKTLIDNSVQQ 425 Query: 420 VASGADLVDQAGKTMHEIVDSVARVATLMSEIAVASREQSRGIDEINHAVTQMDEGTQQN 479 V G+ LV +AG T+ E+V SV RV +MSEI+ AS EQ++GI+++N A+TQMDE TQQN Sbjct: 426 VGLGSGLVQKAGVTISEVVSSVQRVTDVMSEISAASGEQTQGIEQVNQAITQMDEVTQQN 485 Query: 480 AALVEQAAAAAHSLRDQTDQLASLVARFRL 509 AALVE+AA+A+ SL Q +L+ LV FRL Sbjct: 486 AALVEEAASASQSLSHQAQRLSELVGVFRL 515 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.316 0.127 0.331 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,087,491 Number of extensions: 35547 Number of successful extensions: 504 Number of sequences better than 1.0e-08: 68 Number of HSP's gapped: 281 Number of HSP's successfully gapped: 69 Length of query: 512 Length of database: 1,619,870 Length adjustment: 89 Effective length of query: 423 Effective length of database: 1,198,455 Effective search space: 506946465 Effective search space used: 506946465 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 133 (55.8 bits)