BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4465.p
         (556 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313876|ref|YP_003777968.1| membrane-associated, metal-depe...   873   0.0  

>gi|300313876|ref|YP_003777968.1| membrane-associated,
           metal-dependent hydrolase [Herbaspirillum seropedicae
           SmR1]
          Length = 556

 Score =  873 bits (2255), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 434/554 (78%), Positives = 486/554 (87%)

Query: 1   MNKLVNRLVLGLIGLAIFWALGRISVNELAKSSVLMATALPGIAGLCLVLPWLRERPRCL 60
           M KL+NRL+LGL GLA+FW LG IS NELAKSSVLMATALPGIAGL L++PW R RP   
Sbjct: 1   MKKLINRLLLGLGGLAVFWGLGMISGNELAKSSVLMATALPGIAGLFLIIPWCRRRPGLF 60

Query: 61  SAASVGVVGLFFLDAAIKGFLRDYFGLRPNPILVLQAIFNTNPAESSEFFRHNGRDLAEA 120
           S AS+ ++GLFFLDAA+KGFLRDYFGLRPNP+LVLQAIFNTNPAESSEFFRHN RD+A+A
Sbjct: 61  STASLLIIGLFFLDAALKGFLRDYFGLRPNPVLVLQAIFNTNPAESSEFFRHNWRDVAQA 120

Query: 121 VGLLWLMWGGLWLGERWLRRRESGRAPAPWRWRGRAVVGGLLGVFVALHFNPTMAKENPL 180
           V    +M    WLGERWL RRE+ +A APWR RG A VG LL VFVALHFNPTMAKENPL
Sbjct: 121 VLAFVVMMSLAWLGERWLARREARQAAAPWRARGVAGVGLLLAVFVALHFNPTMAKENPL 180

Query: 181 LFWPIRYLDYRAQMAQAASMEANVARNMAHRSDWQVSYHGPERNTLVWVIGESLNRANMS 240
           LFWPIRYL+Y+AQ  QA SME N+A NMA  + WQV Y GP+RNTLVWVIGESLNRANMS
Sbjct: 181 LFWPIRYLEYQAQTEQARSMEQNIASNMAQSAQWQVHYAGPQRNTLVWVIGESLNRANMS 240

Query: 241 LYGYERHTSPTLEAMRQDLIVFRDVVSSEPATMASLMKMLTPADLNDPQAWNSKPDVLML 300
           LYGYER T+P L+AMR+DL+VFRDVVSSEPATM SLMKMLTPADL+DP AW+ KPDV+ML
Sbjct: 241 LYGYERQTTPLLDAMRRDLLVFRDVVSSEPATMGSLMKMLTPADLDDPHAWSRKPDVVML 300

Query: 301 AREAGFRIHWLSNQPPNDGWLGLVSRRADEQVFINKGAGRGENNFDGNLLPALQSALQDP 360
           AREAGFR+ WLSNQ PNDGWLG+VSRRAD+QVFINKGAGRGENNFDGNLLP L++ALQDP
Sbjct: 301 AREAGFRVIWLSNQVPNDGWLGVVSRRADQQVFINKGAGRGENNFDGNLLPGLEAALQDP 360

Query: 361 APKKLIVVHLLGAHPTYDMRYPSQYAQFDSVRDGVMEKLENADRSPWIRQLRNEYDNAMA 420
           APKKLIVVHLLGAHPTYDMRYPS YA+FD VRDGV +KLENADRSPWIRQLRNEYDNA+A
Sbjct: 361 APKKLIVVHLLGAHPTYDMRYPSDYARFDGVRDGVTQKLENADRSPWIRQLRNEYDNAIA 420

Query: 421 YNDYVVGNMLRLTMNTARQDNASLLLSSDHAQEVGHTRNHAGQSVADASGYEIPMLVWTR 480
           YNDYVVGNMLRLTM TA +DNASL+ SSDHAQEVGHTR+HAGQS +D SGYEIPML+WTR
Sbjct: 421 YNDYVVGNMLRLTMRTAPEDNASLVFSSDHAQEVGHTRDHAGQSASDPSGYEIPMLLWTR 480

Query: 481 AFTGKSAQDKAQLEYRPYQTDQLEHTVMGLLGVQSRYYDARHDILSEQFAAAHFHRSRRI 540
           +F GKS++++AQLE+RPYQTDQ+EHT++GLLGV+S YYDA  DILS+ F A  FH  RRI
Sbjct: 481 SFIGKSSEERAQLEHRPYQTDQMEHTILGLLGVRSVYYDAHRDILSDSFHAPPFHGLRRI 540

Query: 541 NGQPYQPRTLLYNQ 554
           NGQPY PRT+ YNQ
Sbjct: 541 NGQPYLPRTVPYNQ 554


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.135    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,663,063
Number of extensions: 67625
Number of successful extensions: 204
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 204
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 1,619,870
Length adjustment: 90
Effective length of query: 466
Effective length of database: 1,193,720
Effective search space: 556273520
Effective search space used: 556273520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 133 (55.8 bits)