BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4461.p
         (803 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313394|ref|YP_003777486.1| glucosidase [Herbaspirillum ser...  1395   0.0  

>gi|300313394|ref|YP_003777486.1| glucosidase [Herbaspirillum
           seropedicae SmR1]
          Length = 803

 Score = 1395 bits (3611), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 655/803 (81%), Positives = 718/803 (89%)

Query: 1   MSMLHPPRFALQSRHGNHLRLAAESGAAIELFVLEEDIIRVLVLPQGELRGPASWAIAPG 60
           MSMLHPPRFALQS  GNHL L A++GA IELFVLEEDIIRVLVLP+G+L+GPASWA+APG
Sbjct: 1   MSMLHPPRFALQSSEGNHLCLKADTGAVIELFVLEEDIIRVLVLPEGKLQGPASWAVAPG 60

Query: 61  AEDTPPQGRDRRDMSGFTLPDFALHNEAGRVQIETTQIRLTVTLEGGLCQWEMQRQGQWQ 120
           AED P QGRDRRD+SGF LP FAL    G++QIET  IRL++ LEGG CQWE++++GQWQ
Sbjct: 61  AEDVPLQGRDRRDLSGFALPSFALRTTPGQLQIETALIRLSIALEGGFCQWELRQEGQWQ 120

Query: 121 TVLTDRPTQAYNFGYWDQQVYHYLKRHPDELYFGLGERAGDMNRAGQSYEMRNIDAMGYS 180
           +VL DRPTQAYNFGYWD+QVYHYL+R P+E+YFGLGERAGDMNRAGQSYEMRNIDAMGYS
Sbjct: 121 SVLADRPTQAYNFGYWDEQVYHYLRRQPEEMYFGLGERAGDMNRAGQSYEMRNIDAMGYS 180

Query: 181 ARNTDPLYKHIPFYITWNAQAASGFGLFYDTLSDCRFDMGRELDNYHGLYRYFVAPHGDL 240
           ARNTDPLYKHIPFYITW  +  +GFGLFYDTLSDCRFDMGRELDNYHG YRYF APHGDL
Sbjct: 181 ARNTDPLYKHIPFYITWLPKTGAGFGLFYDTLSDCRFDMGRELDNYHGHYRYFTAPHGDL 240

Query: 241 DYYFIASPDTPLAATRRFTWLTGRPAWMPKWGLGYSGSTMSYTDAPDAQVQMGQFIDKCR 300
           DYYFIASP TPLAATRRFTWLTGRPAWMPKWGLGYSGSTMSYTDAPDAQVQMGQFI KCR
Sbjct: 241 DYYFIASPGTPLAATRRFTWLTGRPAWMPKWGLGYSGSTMSYTDAPDAQVQMGQFIAKCR 300

Query: 301 QHDILCDSFHLSSGYTSIGPKRYVFHWNTDKFPDAKGFVQSYHDAGVHLCANIKPCLLRD 360
           +HDILCDSFHLSSGYTSIGPKRYVFHWNT+KFPD  GFV+SY DA +HLCANIKPCLLRD
Sbjct: 301 EHDILCDSFHLSSGYTSIGPKRYVFHWNTEKFPDPHGFVRSYLDASIHLCANIKPCLLRD 360

Query: 361 HPQFEQAREAGLLINDSQGQPAWVQFWDEVGAYLDFTNPATQQWWKANVKSALLDYGISA 420
           HPQFEQAR+AGLLI DSQG+PAWVQFWDEVGAYLDFTNPAT  WW+ANVK ALLDYG+SA
Sbjct: 361 HPQFEQARQAGLLICDSQGEPAWVQFWDEVGAYLDFTNPATLDWWRANVKQALLDYGVSA 420

Query: 421 TWNDNNEFEVWTPDALAHGFGAPYPVQQAKVLQTMLMMRTSHHAQCEAAPQQRPFLVSRS 480
           TWNDNNEFEVWT DA AHGFG  YPV+QAKVLQTMLMM+ S  AQ EAAPQ+RPFLVSRS
Sbjct: 421 TWNDNNEFEVWTGDAYAHGFGQQYPVRQAKVLQTMLMMQASRQAQLEAAPQRRPFLVSRS 480

Query: 481 GGAGMQRYVQTWSGDNYTSWETLRYNLKMGLGLALSGVSNIGHDIGGFAGPAPEPELLVR 540
           GGAGMQRYVQTWSGDNYTSWETLRYNLKMGLGLALSGVSNIGHDIGGF+GPAP PELLVR
Sbjct: 481 GGAGMQRYVQTWSGDNYTSWETLRYNLKMGLGLALSGVSNIGHDIGGFSGPAPAPELLVR 540

Query: 541 WVAFGVFMPRFSIHSWNDDKTVNEPWMYPEATAQIAALIKLRYRFIPYLYELLWQSTRDY 600
           WVAFGVFMPRFSIHSWNDDKTVNEPWMYPE TAQIAALIKLRYRFIPYLYELLWQST+DY
Sbjct: 541 WVAFGVFMPRFSIHSWNDDKTVNEPWMYPEVTAQIAALIKLRYRFIPYLYELLWQSTQDY 600

Query: 601 QPVLRPTFAQFPQDRRCYEECDEMMLGSDLLVAPVVEAGQTERELYLPAGADWVSYWSGE 660
           QPVLRPTFA+FP DRRC +ECD+MMLGS +LVAPVVE GQTER +YLP+GA WVSYWSGE
Sbjct: 601 QPVLRPTFAEFPHDRRCLDECDDMMLGSAMLVAPVVEQGQTERRVYLPSGARWVSYWSGE 660

Query: 661 SFAGGQRVRLPAPWEQPVMLIRKGGVIPMNVAEQHFGQPADARAFLVAPVAGEGEASGGC 720
            + GGQ + LPAPW+QPVML+R+G VIPMNVA+Q F   AD RAFLV P   +GEASG C
Sbjct: 661 RYEGGQEISLPAPWDQPVMLLREGAVIPMNVAQQQFDVRADERAFLVVPYKEQGEASGAC 720

Query: 721 IEDDGHSQAWREGEQGRWQVRARSDAHSITLQVTQEGQMPVATDTVDIWLPAGDTRTLHT 780
           +EDDGHSQAWR+GEQGRWQVRARSDA ++TL+V +E ++PVA +T+DI+LPA + R +  
Sbjct: 721 VEDDGHSQAWRDGEQGRWQVRARSDAAAVTLEVGREDRLPVAAETIDIFLPASEQRPVRA 780

Query: 781 PEARIASEHNSHGWRCLRLDMKN 803
            +ARI SE  S GWR L L +  
Sbjct: 781 TQARIVSEQRSQGWRRLTLALST 803


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.136    0.446 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,991,129
Number of extensions: 141356
Number of successful extensions: 289
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 289
Number of HSP's successfully gapped: 1
Length of query: 803
Length of database: 1,619,870
Length adjustment: 93
Effective length of query: 710
Effective length of database: 1,179,515
Effective search space: 837455650
Effective search space used: 837455650
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 134 (56.2 bits)