BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4459.p
         (819 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313869|ref|YP_003777961.1| superfamily II helicase [Herbas...  1281   0.0  

>gi|300313869|ref|YP_003777961.1| superfamily II helicase
           [Herbaspirillum seropedicae SmR1]
          Length = 829

 Score = 1281 bits (3314), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 680/818 (83%), Positives = 734/818 (89%)

Query: 1   MSSSPASCTLHPRLTLQTLTRGEGLLGMRAHGLFGPRGGMVTVAQIDWVYGEGAQRWSTP 60
           M+SSP     HPRLTLQTLTRG+GLLGMRAHGLFGPRGGMVTVAQIDWVYG+GAQ WSTP
Sbjct: 11  MASSPTVSAFHPRLTLQTLTRGDGLLGMRAHGLFGPRGGMVTVAQIDWVYGQGAQGWSTP 70

Query: 61  APTSQAEQETSYTPAHIRRDPDAEALALDTIREMGLLPLREDALQWRADNPLHDAGPLWS 120
           APTS    +  YTPAHI+RD  AEA AL+ IRE+GLLPLREDALQWRA NPLHDAGPLW+
Sbjct: 71  APTSPNGDQPDYTPAHIQRDHQAEAAALEDIRELGLLPLREDALQWRAHNPLHDAGPLWT 130

Query: 121 LMLEASFGDFWADQAPRLQQLGWTLRVRPGFAHESVPVSAWRFIVSSERGEVSAREVAAP 180
           L+ E  FGDFWADQAPRLQ  GW LR RPGFAHESVPV+AWRFIVSS+ GEV  REVAAP
Sbjct: 131 LVQEEFFGDFWADQAPRLQAQGWILRARPGFAHESVPVTAWRFIVSSQTGEVINREVAAP 190

Query: 181 LSPRAFSSEVFDGLDPGGRWLLSMGIEVDGQHLDLAPMVADLLRRDPRWGDAQQVERMDP 240
           L+PRAFSSEVFDGLDP GRWLL++GIEV+GQ +D+APMVADLLRRDPRWGDAQQVERMDP
Sbjct: 191 LTPRAFSSEVFDGLDPSGRWLLAIGIEVEGQSMDVAPMVADLLRRDPRWGDAQQVERMDP 250

Query: 241 HAVISLRAPGGRRIDAMVGPLRAVVLALLDLLVDLKRKEGPLALSPWDAHRLESLQHALQ 300
           HAVISLRAPGGRRIDAM GPL+AVVLALLDLLVDL RK+GPL L+PWDAHR++ LQ ALQ
Sbjct: 251 HAVISLRAPGGRRIDAMAGPLKAVVLALLDLLVDLGRKDGPLRLTPWDAHRIDGLQAALQ 310

Query: 301 GIEGGAPWHLSGAAGLLQLAQRLRAAGSVQPVAPPAGLGLDLRGYQRQGVAWLQYLRQHG 360
           G+EG  PWH+SGA GLL LA+RLRAAGSV PV  P GLGL LR YQR GVAW+QYLR HG
Sbjct: 311 GLEGATPWHISGADGLLALARRLRAAGSVAPVPQPDGLGLTLRDYQRYGVAWMQYLRTHG 370

Query: 361 LAGILADDMGLGKTAQVLAHLLIEQQAGRLDLPALVVVQTSLLLNWQQEARRIAPALRVQ 420
           LAGILADDMGLGKTAQVLAH+LIE+QAGRLDLP LVV  TSLL NWQQEARRI P LRV 
Sbjct: 371 LAGILADDMGLGKTAQVLAHVLIEKQAGRLDLPVLVVAPTSLLFNWQQEARRITPDLRVL 430

Query: 421 VLHGEHRAEQLPAIAAGQADLVLTTYTLLWRDLDALLALRFHLLVLDEAQTIKNAGARSA 480
           +LHG+ RA+   A+A+GQ DLVLT+Y LLWRDLD LL  R+H+LVLDEAQT+KNA +RSA
Sbjct: 431 LLHGQERAQHFSALASGQVDLVLTSYPLLWRDLDQLLPQRWHMLVLDEAQTVKNAASRSA 490

Query: 481 AAARRLHARHRLCMTGTPVENHLGELWSQFHFLMPGLLGDARSFARLWRKPIEQQGQTVR 540
           AAARRL ARHRLCMTGTP+ENHLGELWSQFHFLMPG LGDARSFARLWRKPIE+QGQTVR
Sbjct: 491 AAARRLQARHRLCMTGTPLENHLGELWSQFHFLMPGFLGDARSFARLWRKPIEEQGQTVR 550

Query: 541 ARLLAQRVRPFILRRRKEDVLQELPARIEMVERLPLQGRQRELYESVRMAADKQVRRALE 600
           ARLLAQRVRPFILRRRK+DVLQELP R E++ERLPLQGRQRELYESVRMAADKQVRRALE
Sbjct: 551 ARLLAQRVRPFILRRRKQDVLQELPPRSEIIERLPLQGRQRELYESVRMAADKQVRRALE 610

Query: 601 RRGLASSQVTVMDALLKLRQVCCDPYLLKQGHMPKGLERAKIEWLRDTLPTLMEEGRRVL 660
           RRGL  SQVTVMDALLKLRQVCCDPYLLKQG MPKGLERAKI+WL DTLP L+ EGRR+L
Sbjct: 611 RRGLGGSQVTVMDALLKLRQVCCDPYLLKQGRMPKGLERAKIDWLCDTLPALVAEGRRIL 670

Query: 661 VFSQFTSMLQLIASELAALQLPCLMLTGEIDPAARGAVIAQFQEEAVPLMLVSLKVGGVG 720
           VFSQFT ML+LIA++L  LQLP LMLTGE +PAAR  VIA FQ+E  PLMLVSLK GGVG
Sbjct: 671 VFSQFTGMLKLIAAQLEPLQLPYLMLTGETEPAARADVIAGFQQEQTPLMLVSLKAGGVG 730

Query: 721 LNLTAADTVVLVDPWWNPAVEQQAIARAHRLGQRRQVFVYKLVIEGSIEERLLELQARKS 780
           LNLTAADTVVLVDPWWNPAVE+QAIARAHRLGQ+RQVFVYKLVIEGSIEERLLELQARKS
Sbjct: 731 LNLTAADTVVLVDPWWNPAVEEQAIARAHRLGQQRQVFVYKLVIEGSIEERLLELQARKS 790

Query: 781 ALAEGMLGRDDASTVKFGEEELQALLAPLGAGIAEKIL 818
           ALAEGMLGRDDA+TVKFGEEELQALLAPLGAGIAEKIL
Sbjct: 791 ALAEGMLGRDDATTVKFGEEELQALLAPLGAGIAEKIL 828


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.137    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,557,306
Number of extensions: 110509
Number of successful extensions: 409
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 408
Number of HSP's successfully gapped: 1
Length of query: 819
Length of database: 1,619,870
Length adjustment: 93
Effective length of query: 726
Effective length of database: 1,179,515
Effective search space: 856327890
Effective search space used: 856327890
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 135 (56.6 bits)