BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4451.p
         (401 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313859|ref|YP_003777951.1| nicotinic acid phosphoribosyltr...   750   0.0  
gi|300310958|ref|YP_003775050.1| nicotinate phosphoribosyltransf...   417   e-118

>gi|300313859|ref|YP_003777951.1| nicotinic acid
           phosphoribosyltransferase [Herbaspirillum seropedicae
           SmR1]
          Length = 400

 Score =  750 bits (1936), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/397 (91%), Positives = 377/397 (94%)

Query: 1   MAPVVRSLLETDLYKFTMWQALLHSHPGAQAEYTFVCRNEPQFPLAELQQEVERELDHLC 60
           MAPVVRSLLETDLYKFTMWQALLHSHPGAQAEYTFVCRN+P FPLAEL+++VERELDHLC
Sbjct: 1   MAPVVRSLLETDLYKFTMWQALLHSHPGAQAEYTFVCRNQPAFPLAELKEDVERELDHLC 60

Query: 61  RLRFQPEELAYLAGLRYMKSDFIDFLALFRFQRKFIQVQTRGEQLCIVARGPQVHVMGFE 120
            LR +PEEL YLA LRYMKSDFIDFLALFRFQRKFI+V T G++LCIVARGPQVHVMGFE
Sbjct: 61  CLRLRPEELDYLAQLRYMKSDFIDFLALFRFQRKFIEVSTDGDRLCIVARGPQVHVMGFE 120

Query: 121 IFVLYIVNELYFRRLGTPATLVEARRRLQDKLALLHELASQPAGRHPFEFFDFGVRRRYS 180
           IFVLYIVNELYFRR+G    L EARRRLQDK+ALL   AS+PAGRHPFEFFDFGVRRRYS
Sbjct: 121 IFVLYIVNELYFRRVGHAGALDEARRRLQDKIALLKSFASEPAGRHPFEFFDFGVRRRYS 180

Query: 181 GAWQEEVVATLAREVPHYFKGSSNVWLAMQYDLVPIGTMAHEYLQSYQAFGVRLRDFQKA 240
           GAWQEEVVATLAREVP YFKGSSNVWLAMQY LVPIGTMAHEYLQSYQ+FGVRLRDFQKA
Sbjct: 181 GAWQEEVVATLAREVPQYFKGSSNVWLAMQYQLVPIGTMAHEYLQSYQSFGVRLRDFQKA 240

Query: 241 ALEHWVQEYRGDLGVALTDVVGMDAFLADFDLYFAKLFDGLRHDSGDPFEWGEKALAHYR 300
           ALE WVQEYRGDLGVALTDVVGMDAFLADFDLYFAKLFDGLRHDSGDPFEWGEKALAHYR
Sbjct: 241 ALEAWVQEYRGDLGVALTDVVGMDAFLADFDLYFAKLFDGLRHDSGDPFEWGEKALAHYR 300

Query: 301 KLRLDAHTKRLVFSDGLDLPQAIALYRHFSDRAMTGFGIGTNLSNDTGIPPLNIVMKLSS 360
           KLRLDA+TKRLVFSDGLDLPQA+ LYRHFSDRAMTGFGIGTNLSNDTGI PLNIVMKLSS
Sbjct: 301 KLRLDANTKRLVFSDGLDLPQALRLYRHFSDRAMTGFGIGTNLSNDTGITPLNIVMKLSS 360

Query: 361 CNGQAVAKLSDSPGKTLCKDETFLAYLRQLFGIAAPA 397
           CNGQAVAKLSDSPGKTLCKDETFLAYLRQLFGIAAPA
Sbjct: 361 CNGQAVAKLSDSPGKTLCKDETFLAYLRQLFGIAAPA 397


>gi|300310958|ref|YP_003775050.1| nicotinate
           phosphoribosyltransferase [Herbaspirillum seropedicae
           SmR1]
          Length = 402

 Score =  417 bits (1072), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 208/395 (52%), Positives = 266/395 (67%), Gaps = 8/395 (2%)

Query: 4   VVRSLLETDLYKFTMWQALLHSHPGAQAEYTFVCRNEPQFPLAELQQEVERELDHLCRLR 63
           ++ SLL+TDLYKFTM Q +LH  PGAQ EY F CRNE    L     E+  E+  LCRLR
Sbjct: 13  IITSLLDTDLYKFTMMQVVLHHFPGAQVEYRFKCRNE-NVDLRPYVDEIRAEIAALCRLR 71

Query: 64  FQPEELAYLAGLRYMKSDFIDFLALFRFQRKFIQVQTR---GEQLCIVARGPQVHVMGFE 120
           F+ +EL YL  LR++KSDF+DFL LF    K+I VQ       ++ I  +GP +H + FE
Sbjct: 72  FKEDELNYLRSLRFIKSDFVDFLDLFHLNEKYITVQPDPAGNGEIEISVKGPWLHTIMFE 131

Query: 121 IFVLYIVNELYFRRLGTPATLVEARRRLQDKLALLHELASQPAGRHPFEFFDFGVRRRYS 180
           + VL IVNE+YFR       L E R RL+ K++++ +   + AG    +  D+G RRR+S
Sbjct: 132 VPVLAIVNEVYFRATQRSPDLEEGRARLRKKMSVITD-DPELAG---CKIADYGTRRRFS 187

Query: 181 GAWQEEVVATLAREVPHYFKGSSNVWLAMQYDLVPIGTMAHEYLQSYQAFGVRLRDFQKA 240
            +W  EV+  + + +  +F G+SNV  AMQ+DL P+GTMAHEYLQ+ QA G RLRD Q  
Sbjct: 188 RSWHAEVIDEMKQHMGDHFAGTSNVMYAMQHDLTPLGTMAHEYLQACQALGPRLRDSQTF 247

Query: 241 ALEHWVQEYRGDLGVALTDVVGMDAFLADFDLYFAKLFDGLRHDSGDPFEWGEKALAHYR 300
           A E W +EYRGDLG+ L+DV GMDAFL D+D+YF KLFDG RHDSGDPFEWGE+ + HYR
Sbjct: 248 AFEMWAREYRGDLGITLSDVYGMDAFLRDYDMYFCKLFDGARHDSGDPFEWGERLIQHYR 307

Query: 301 KLRLDAHTKRLVFSDGLDLPQAIALYRHFSDRAMTGFGIGTNLSNDTGIPPLNIVMKLSS 360
             R+D  +K LVFSD LD  +  ALY  F DRA   FG+GTNL+ND G  PL +VMK+  
Sbjct: 308 DNRVDPSSKVLVFSDSLDFDKVRALYLRFKDRAKVAFGVGTNLTNDLGYTPLQVVMKMVR 367

Query: 361 CNGQAVAKLSDSPGKTLCKDETFLAYLRQLFGIAA 395
           CNGQ VAKLSD+P K +C D  ++ YLRQ+F I A
Sbjct: 368 CNGQPVAKLSDTPSKNMCDDPAYVNYLRQVFQIKA 402


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.326    0.141    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,325,362
Number of extensions: 56535
Number of successful extensions: 188
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 184
Number of HSP's successfully gapped: 2
Length of query: 401
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 314
Effective length of database: 1,207,925
Effective search space: 379288450
Effective search space used: 379288450
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 132 (55.5 bits)