BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4447.p
         (299 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313852|ref|YP_003777944.1| drug/metabolite transporter (DM...   452   e-128

>gi|300313852|ref|YP_003777944.1| drug/metabolite transporter (DMT)
           superfamily permease [Herbaspirillum seropedicae SmR1]
          Length = 298

 Score =  452 bits (1163), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 269/295 (91%), Positives = 285/295 (96%)

Query: 1   MSSSNIAKLLLLAAIWGTSFMLMRIAAPIFGPMLTTFGRAALATLALLAYARVRGVPLHW 60
           MSSSN+ KLLLLAAIWGTSFMLMRIAAP+FGPMLTTFGRA+LATLALLA+ARVRGVP+ W
Sbjct: 1   MSSSNLCKLLLLAAIWGTSFMLMRIAAPVFGPMLTTFGRASLATLALLAFARVRGVPMQW 60

Query: 61  RRNWLPYLIIGVFNTALPFALFAWSALHIPSAYMATMNSLAPIFTAMFGFLLMGERLSLL 120
           R NWLPYL+IG+FNTALPFALFAWSALHIPSAYMATMNSLAP+FTAMFGFLLMGERLSL+
Sbjct: 61  RSNWLPYLVIGIFNTALPFALFAWSALHIPSAYMATMNSLAPVFTAMFGFLLMGERLSLV 120

Query: 121 RTAAFVLGLVGVAVLVGIGPAPADALVIAGVLAAMGAAVSYGFAATFTRMRAGGIPPIAM 180
           R AAFVLGLVGVAVLVGIGPAPADA+VIAGVLAAMGAAVSYGFAATFTR+RAGGI PIA+
Sbjct: 121 RCAAFVLGLVGVAVLVGIGPAPADAMVIAGVLAAMGAAVSYGFAATFTRLRAGGISPIAL 180

Query: 181 ATGSQFAAALCLLPLAAPSVPHALQAGTLPALLSVLVLGVVCTGLAYALFFQLIAAEGAT 240
           ATGSQFAAALCLLPLAAPS+PHALQAGTLPALL+VLVLGVVCTG+AYALFFQLIAAEGAT
Sbjct: 181 ATGSQFAAALCLLPLAAPSMPHALQAGTLPALLAVLVLGVVCTGIAYALFFQLIAAEGAT 240

Query: 241 KAITVTFLVPMTASLWAWLLLDEAVTLGTVAGIAIVLVATAIALRAKPAVALKDK 295
           KAITVTFLVPMTASLWAWLLLDE VTLGTV GIAIVLVATA ALRAKPAVA + K
Sbjct: 241 KAITVTFLVPMTASLWAWLLLDEPVTLGTVTGIAIVLVATATALRAKPAVAARTK 295


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.329    0.138    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 759,049
Number of extensions: 26457
Number of successful extensions: 207
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 204
Number of HSP's successfully gapped: 4
Length of query: 299
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 214
Effective length of database: 1,217,395
Effective search space: 260522530
Effective search space used: 260522530
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 130 (54.7 bits)