BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4441.p
         (237 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313845|ref|YP_003777937.1| hypothetical protein Hsero_4563...   424   e-120
gi|300312640|ref|YP_003776732.1| hypothetical protein Hsero_3343...   181   3e-47
gi|300313760|ref|YP_003777852.1| hypothetical protein Hsero_4478...   157   8e-40

>gi|300313845|ref|YP_003777937.1| hypothetical protein Hsero_4563
           [Herbaspirillum seropedicae SmR1]
          Length = 237

 Score =  424 bits (1091), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 216/237 (91%), Positives = 230/237 (97%)

Query: 1   MTTKFSPSRRAVLAATAAAVPIVSLPLLKQARADGLEGIELQHYKPVFFDDAQWRFILAA 60
           MT+KFSPSRRAVLAATAAAVP+VS+PLLK+A+ADGLEGIELQHYKPVFF+ AQW FILAA
Sbjct: 1   MTSKFSPSRRAVLAATAAAVPLVSIPLLKEAQADGLEGIELQHYKPVFFNPAQWLFILAA 60

Query: 61  CDRLIPAEGRGPGALETNVPVFIDQQLHHGLGSDIYQQGPHPADFPSTLGFQIPYAPQDI 120
           CDRLIPAEGRGPGALETNVPVFIDQQLH GLGSDIYQQGPH  D P+TLGFQIPYAPQD+
Sbjct: 61  CDRLIPAEGRGPGALETNVPVFIDQQLHAGLGSDIYQQGPHQPDAPATLGFQIPYAPQDV 120

Query: 121 YRIGIKLTQEVSQQQHGKPFEQLEAKDKDALLTALQKNGVDFAALGEKAMKPSQFFGQLL 180
           YRIGI LTQ++SQQQHGKPFEQL+AKDKDALLTALQKNGVDFAALGEK+M+PSQFFGQLL
Sbjct: 121 YRIGITLTQQISQQQHGKPFEQLDAKDKDALLTALQKNGVDFAALGEKSMRPSQFFGQLL 180

Query: 181 GDTKNGYLADPMYGGNKDMKAWIAIGFPGARAAYTEWVDQHNVKYPLGPVSLSGKRA 237
           GDTKNGYLADPMYGGNKDMKAW+AIGFPGARAAYTEWVDQHNVKYPLGPVSLSGKRA
Sbjct: 181 GDTKNGYLADPMYGGNKDMKAWVAIGFPGARAAYTEWVDQHNVKYPLGPVSLSGKRA 237


>gi|300312640|ref|YP_003776732.1| hypothetical protein Hsero_3343
           [Herbaspirillum seropedicae SmR1]
          Length = 240

 Score =  181 bits (460), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 100/233 (42%), Positives = 137/233 (58%), Gaps = 12/233 (5%)

Query: 10  RAVLAATAAAVPI---VSLPLLKQARADGLEGIELQHYKPVFFDDAQWRFILAACDRLIP 66
           R VLA   AA  +    ++ + + A AD  E  + + Y P +F  A+W F+ AA D LIP
Sbjct: 13  RQVLAIVPAASTLGGATTVAVSQAAMADSSEPGKPRAYTPTYFTAAEWAFLNAAVDHLIP 72

Query: 67  AEGRGPGALETNVPVFIDQQLH--HGLGSDIYQQGP-HPADFPSTLGFQIPYAPQDIYRI 123
           ++  G GALET VP FID+Q+   +G G   Y QGP HP   P  LG+Q+   P+DIYR 
Sbjct: 73  SDQYGAGALETGVPEFIDRQMETPYGAGKLWYMQGPFHPDSVPE-LGYQLSLVPRDIYRQ 131

Query: 124 GIKLTQEVSQQQHGKPFEQLEAKDKDALLTALQKNGVDFAALGEKAMKPSQFFGQLLGDT 183
           GI    +   + HGK F +L+   +  +L  +    + F  +  K      FF  +LG+T
Sbjct: 132 GIAACNDWCSKNHGKVFAELDKAKQLEVLKMMDGGKISFETVPAKT-----FFNFMLGNT 186

Query: 184 KNGYLADPMYGGNKDMKAWIAIGFPGARAAYTEWVDQHNVKYPLGPVSLSGKR 236
           K GY ADPMYGGN+ M  W  +GFPGARA + +WVDQ+NVKYP GPVS+ G++
Sbjct: 187 KEGYFADPMYGGNQKMGGWKMVGFPGARADFADWVDQYNVKYPYGPVSILGEK 239


>gi|300313760|ref|YP_003777852.1| hypothetical protein Hsero_4478
           [Herbaspirillum seropedicae SmR1]
          Length = 235

 Score =  157 bits (397), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 85/231 (36%), Positives = 125/231 (54%), Gaps = 5/231 (2%)

Query: 4   KFSPSRRAVLAATAAAVPIVSLPLLKQARADGLEGIEL-QHYKPVFFDDAQWRFILAACD 62
             SP RR  L     A P+ +L +   +     EG    Q Y+P FF+  ++  + A  D
Sbjct: 5   SISPDRRRFLRGALTAAPVAALAVTAGSLTAKAEGPSPDQPYQPSFFNRDEFALLSALAD 64

Query: 63  RLIPAEGRGPGALETNVPVFIDQQLH--HGLGSDIYQQGPHPADFPSTLGFQIPYAPQDI 120
            LIPA+  GPGAL+  VP FID Q++  +G G   Y QGP   D P   G+Q+PY P+++
Sbjct: 65  TLIPADDTGPGALQAGVPEFIDAQMNTPYGQGQLWYMQGPFTPDAPPEFGYQLPYPPREL 124

Query: 121 YRIGIKLTQEVSQQQHGKPFEQLEAKDKDALLTALQKNGVDFAALGEKAMKPSQFFGQLL 180
           Y+ G+       +QQ+G  + +L  + ++ ++   +K   +  +L    + PS  F  LL
Sbjct: 125 YKKGLAEFDAAIRQQYGHGYVELNTQQREKMMAEFEKG--EQGSLKMATIPPSALFNLLL 182

Query: 181 GDTKNGYLADPMYGGNKDMKAWIAIGFPGARAAYTEWVDQHNVKYPLGPVS 231
            +   GY  DP  GGN+ M +W  IGFPGARA Y +WVDQ+   YPL P+S
Sbjct: 183 QNVHEGYFCDPTDGGNRGMGSWKMIGFPGARADYYDWVDQYGKSYPLPPIS 233


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.137    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 822,438
Number of extensions: 37278
Number of successful extensions: 95
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 91
Number of HSP's successfully gapped: 3
Length of query: 237
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 155
Effective length of database: 1,231,600
Effective search space: 190898000
Effective search space used: 190898000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)